Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 NDOR1 Gene 0 40.99 23.52 104.55 24.87 28.01 26.87 33.78 79.65 50.29 107.68 113.05 27.91 31.96 158.96 163.16 144.27 112.94 135.50 57.29 60.36 55.34 34.88 44.13 2 427047 Transcript 0 5.04 0.00 7.84 0.00 0.00 0.00 2.14 4.11 3.17 8.07 5.00 6.00 0.00 4.91 8.84 9.78 10.33 9.16 0.00 2.84 7.14 1.32 1.58 3 458322 Transcript 0 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 1.67 5.21 0.00 0.00 7.48 5.32 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 4 371521 Transcript 0 13.46 8.85 13.11 1.24 2.48 7.51 5.68 18.99 7.46 17.19 14.51 2.32 5.18 24.48 25.85 11.59 17.03 19.27 6.46 15.59 10.49 4.84 2.36 5 344894 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 ER1a ExonRegion 0 3.72 0.28 0.59 0.61 3.97 4.68 4.34 0.95 0.85 2.57 0.53 0.00 0.00 8.34 10.10 9.33 4.89 1.59 0.44 0.95 0.61 2.01 1.22 7 ER1b ExonRegion 0 41.19 10.76 18.93 9.80 20.22 21.57 22.92 19.03 17.64 41.36 59.32 5.75 6.87 108.12 85.37 128.28 96.24 73.65 78.18 25.37 43.19 21.21 51.75 8 E1_Da NovelBoundary 0 7.56 0.00 8.37 7.16 3.74 0.00 2.25 25.18 7.78 26.84 30.59 0.00 0.00 45.91 73.92 46.14 34.88 33.33 32.10 21.73 14.39 15.55 36.71 9 E1a_E2a KnownJunction 0 3.11 3.35 33.20 14.35 0.00 5.00 2.25 26.66 22.48 62.43 127.66 11.25 12.66 276.59 201.62 155.69 179.90 51.11 116.14 33.17 56.84 35.82 28.43 10 I1 Intron 0 13.87 4.23 13.14 7.79 11.98 12.61 11.64 19.77 14.12 27.05 11.12 4.11 8.91 39.93 38.47 43.72 26.39 43.78 23.94 20.41 17.25 15.66 21.61 11 I1_AR1 ActiveIntronRegion 0 13.96 4.25 13.22 7.84 12.05 12.69 11.72 19.89 14.21 27.22 11.18 4.14 8.97 40.17 38.70 43.99 26.54 44.05 24.09 20.54 17.34 15.75 21.73 12 E2_Aa NovelBoundary 1 63.12 6.25 26.76 21.68 11.38 11.47 28.00 42.84 27.14 59.47 24.90 60.47 33.76 61.63 106.68 54.26 26.46 104.42 40.85 41.93 25.64 16.72 32.52 13 ER2a ExonRegion 0 74.02 11.21 43.66 15.99 20.51 18.83 27.23 51.92 34.98 77.40 106.88 60.61 37.16 208.64 192.34 340.00 150.95 142.94 185.81 68.96 59.56 66.11 121.49 14 E2_Da NovelBoundary 1 20.89 0.00 22.12 12.02 17.06 5.79 7.95 26.94 14.99 19.56 10.11 17.56 46.43 29.55 33.50 28.28 29.73 60.15 20.99 28.83 22.86 14.45 11.52 15 E2a_E3a KnownJunction 0 43.86 22.04 59.67 37.42 59.59 45.54 28.26 88.35 61.95 112.20 98.34 64.37 63.79 129.20 128.56 300.35 152.59 174.85 86.40 52.48 41.64 54.19 86.30 16 I2 Intron 0 13.57 6.50 17.93 6.75 12.85 6.66 12.05 15.95 11.30 17.56 11.76 9.21 9.93 23.53 29.57 25.06 19.31 38.75 15.41 22.97 15.19 7.11 17.34 17 I2_AR1 ActiveIntronRegion 0 15.37 5.70 12.41 7.19 9.17 6.33 9.54 18.39 11.28 18.32 16.36 16.78 10.92 30.88 34.97 22.32 30.52 30.47 18.78 20.40 16.68 5.36 17.28 18 I2_SR1 SilentIntronRegion 0 20.62 8.90 22.75 10.39 21.69 5.04 15.74 20.45 13.56 18.52 16.43 21.82 19.65 25.88 38.86 28.52 22.23 44.14 15.73 39.59 17.09 9.25 24.00 19 I2_AR2 ActiveIntronRegion 0 22.82 10.86 19.65 12.96 21.16 9.99 16.11 16.38 13.25 24.34 13.96 13.48 20.58 28.11 41.66 30.61 22.82 42.34 15.47 25.30 18.66 9.01 16.96 20 I2_SR2 SilentIntronRegion 0 13.39 6.96 17.74 5.80 13.94 7.08 15.09 13.43 11.15 16.51 10.75 9.46 10.24 20.28 29.92 26.38 18.11 35.69 19.02 18.61 12.38 6.26 17.93 21 I2_AR3 ActiveIntronRegion 0 7.93 3.49 18.06 4.54 7.39 5.83 7.44 16.73 9.50 14.93 9.48 1.58 2.75 23.04 21.11 21.78 17.06 40.69 11.13 21.47 16.57 6.82 13.95 22 I2_SR3 SilentIntronRegion 0 9.01 7.15 11.08 3.58 3.59 4.93 3.63 14.84 14.04 22.60 10.91 4.95 2.98 24.07 21.80 18.49 11.13 40.26 10.14 24.11 12.60 8.26 19.91 23 E3_Aa NovelBoundary 0 31.12 3.29 38.59 10.49 10.87 10.05 13.43 15.07 26.30 14.61 14.90 6.30 0.00 16.01 4.45 19.23 9.54 48.33 8.75 31.51 27.00 8.08 4.10 24 ER3a ExonRegion 0 31.19 20.63 54.33 19.78 37.92 45.08 42.91 62.67 47.50 99.49 116.33 45.15 55.51 170.73 156.11 172.75 130.32 146.18 72.35 57.51 59.66 35.48 52.53 25 E3_Da NovelBoundary 0 6.00 6.18 18.95 6.49 14.86 2.56 20.14 26.04 16.12 26.16 16.95 5.55 6.82 31.49 33.75 40.67 18.61 75.69 0.00 28.57 13.71 2.69 24.07 26 E3a_E4a KnownJunction 0 11.19 30.32 57.45 18.05 22.41 56.33 39.30 43.95 37.67 87.06 104.50 25.96 92.53 167.05 125.35 133.64 132.12 47.13 60.14 49.79 48.19 29.45 31.50 27 I3 Intron 0 15.76 7.37 30.78 6.07 8.78 9.25 14.40 33.19 19.75 39.36 24.72 13.55 5.47 45.78 47.12 47.03 26.84 52.41 19.04 27.62 20.18 11.94 19.28 28 I3_AR1 ActiveIntronRegion 0 12.41 7.18 21.49 5.91 5.41 10.27 12.39 22.77 18.63 29.53 21.94 7.66 4.52 32.81 45.74 42.09 23.69 48.25 18.62 24.77 15.77 7.20 15.21 29 I3_SR1 SilentIntronRegion 1 16.41 5.22 34.16 7.17 11.51 11.58 24.93 41.95 19.23 49.83 32.68 13.15 9.63 62.28 66.53 70.42 37.05 74.49 21.46 38.79 23.72 14.73 29.30 30 I3_AR2 ActiveIntronRegion 1 7.70 11.31 34.90 6.87 19.37 8.80 16.79 29.04 21.29 40.55 23.35 0.00 4.50 60.42 51.41 24.97 26.28 43.39 20.51 27.83 21.95 0.08 16.56 31 I3_AR3 ActiveIntronRegion 0 19.13 8.40 35.28 7.10 13.19 10.46 16.85 39.36 22.61 44.84 25.86 23.44 6.98 52.07 49.90 55.01 31.51 50.75 23.18 34.38 24.12 14.48 23.49 32 I3_SR2 SilentIntronRegion 0 14.26 6.78 30.36 4.11 2.63 5.61 7.14 29.34 16.82 34.75 22.05 5.22 2.10 38.43 34.96 30.52 17.89 49.46 12.09 14.67 16.37 12.14 11.92 33 E4_Aa NovelBoundary 0 39.56 11.58 51.09 4.13 19.44 19.87 12.63 20.50 26.85 48.19 35.38 6.30 19.15 61.28 97.04 40.25 21.32 56.38 7.91 23.91 17.17 2.39 15.88 34 ER4a ExonRegion 0 19.16 25.35 64.51 14.94 13.05 33.69 24.79 47.52 49.27 89.09 104.47 41.28 66.94 171.04 121.53 107.78 120.97 96.46 39.64 44.23 62.46 33.95 33.58 35 E4_Da NovelBoundary 0 3.63 5.59 14.07 3.56 3.57 2.44 17.97 18.73 12.85 18.56 20.22 0.00 6.82 28.14 36.96 8.03 43.38 33.74 16.85 16.75 13.16 3.12 4.35 36 E4a_E5a KnownJunction 0 42.16 18.81 72.08 18.81 16.13 15.96 10.60 52.41 68.00 90.28 100.71 56.12 72.07 180.00 147.23 106.98 101.08 122.87 66.54 47.87 53.75 34.11 43.88 37 E4a_E6a KnownJunction 0 0.00 0.00 9.14 0.00 0.00 0.00 0.00 3.33 3.27 7.47 2.68 0.00 0.00 0.00 4.45 7.69 13.09 16.08 0.00 0.00 2.78 2.63 3.16 38 E5_Aa NovelBoundary 0 13.93 2.96 31.76 5.19 11.54 2.90 5.52 17.29 21.33 21.89 19.32 0.00 0.00 23.25 26.95 42.89 8.04 43.11 4.52 14.19 22.98 12.12 8.28 39 ER5a ExonRegion 0 28.53 20.65 70.09 18.55 10.18 15.50 23.23 69.09 52.52 99.58 109.42 35.23 48.14 244.18 198.54 159.04 111.75 119.45 74.57 58.76 48.09 35.20 41.54 40 E5_Da NovelBoundary 0 14.00 0.00 30.75 3.50 8.23 5.74 7.95 15.77 13.89 29.76 12.48 0.00 12.99 50.33 46.11 24.95 25.71 76.36 26.17 5.82 8.65 0.00 0.00 41 E5a_E6a KnownJunction 0 68.38 22.76 50.00 18.38 23.77 23.51 21.07 43.99 49.68 82.12 113.56 18.01 38.63 237.39 122.13 156.63 110.89 92.48 82.17 65.13 59.00 31.60 37.90 42 E6_Aa NovelBoundary 0 12.82 12.10 34.86 5.03 3.40 5.00 20.14 27.44 21.30 39.89 23.32 17.56 13.64 41.91 45.99 39.99 70.97 82.82 18.82 6.52 14.15 10.90 11.78 43 ER6a ExonRegion 0 50.63 24.88 85.39 23.38 28.29 33.38 35.17 72.57 52.36 140.12 146.02 52.78 91.12 248.86 219.79 188.81 169.85 183.47 91.94 74.69 78.97 48.04 53.64 44 E6_Da NovelBoundary 1 18.74 6.64 40.39 5.26 8.66 12.55 15.94 25.55 21.90 39.57 27.90 25.36 26.46 24.55 19.66 78.78 12.06 45.27 19.48 8.76 11.74 16.17 15.28 45 E6a_E7a KnownJunction 0 48.53 35.65 129.12 32.56 11.80 33.50 26.14 94.22 50.72 150.37 204.74 40.66 51.62 214.20 172.69 171.24 203.09 216.47 93.74 74.02 60.91 52.23 44.39 46 I6 Intron 0 3.49 0.69 8.37 0.66 5.25 3.02 4.36 8.53 4.86 14.69 8.97 2.58 4.33 12.59 22.88 20.63 6.52 27.86 2.08 3.59 7.32 2.10 2.92 47 I6_SR1 SilentIntronRegion 0 3.94 0.44 10.04 0.84 6.39 3.43 5.15 9.83 5.00 17.32 10.01 3.25 5.45 14.56 25.71 25.50 8.20 33.51 2.62 4.07 8.57 2.42 3.67 48 E7_Aa NovelBoundary 0 10.52 0.00 30.75 4.99 0.00 20.27 15.37 30.60 23.21 39.30 26.48 7.65 12.82 24.07 39.80 31.36 29.64 57.54 22.59 20.13 16.56 8.45 28.08 49 ER7a ExonRegion 0 28.21 21.22 111.71 26.33 18.77 36.57 35.19 90.36 64.48 154.56 173.44 61.50 95.91 208.85 219.71 178.99 201.08 183.40 74.70 66.39 88.11 49.90 44.46 50 E7_Da NovelBoundary 0 0.00 8.95 30.04 0.00 0.00 5.51 9.45 8.75 18.55 40.24 24.80 0.00 11.85 26.96 23.86 28.20 16.08 41.20 0.00 11.89 17.42 5.88 6.57 51 E7a_E8a KnownJunction 0 52.97 24.60 111.62 46.55 24.45 45.54 31.00 99.48 64.21 186.50 138.40 87.48 156.16 209.84 255.89 287.10 189.53 285.16 92.52 61.17 71.04 62.70 89.89 52 E8_Aa NovelBoundary 0 3.41 0.00 19.19 2.93 15.96 0.00 10.29 33.80 19.73 45.67 19.95 0.00 0.00 19.84 39.31 15.72 17.95 57.66 8.28 11.89 22.24 5.45 4.01 53 ER8a ExonRegion 0 31.11 23.08 119.98 22.48 33.48 44.87 42.53 108.83 78.54 139.52 162.42 64.08 91.38 258.35 261.07 214.25 173.04 215.19 71.09 76.89 81.81 50.71 63.13 54 E8_Da NovelBoundary 0 21.63 5.85 51.71 3.16 8.23 7.15 26.37 45.92 18.81 59.82 19.85 0.00 0.00 26.84 8.90 27.34 31.70 46.93 25.32 16.94 16.19 5.94 11.61 55 E8a_E9a KnownJunction 0 51.27 34.40 78.47 25.47 32.94 25.50 53.53 102.60 71.58 92.46 189.36 55.67 93.99 209.84 159.22 214.90 175.32 180.82 56.57 58.29 94.52 48.25 60.27 56 E9_Aa NovelBoundary 0 3.70 17.69 79.03 14.02 22.92 16.30 12.23 51.84 40.34 87.36 9.63 17.71 6.17 28.31 31.89 39.73 13.65 107.74 30.12 11.38 11.61 26.70 16.22 57 ER9a ExonRegion 0 50.99 18.43 91.66 17.76 10.26 28.95 31.38 83.73 54.21 90.58 170.01 60.61 71.05 237.08 236.24 202.60 164.92 152.18 59.17 60.97 75.82 53.86 63.76 58 E9_Da NovelBoundary 0 17.26 12.23 100.56 19.74 12.56 16.87 23.10 67.28 48.12 96.94 48.49 7.50 0.00 63.57 73.92 55.20 30.57 85.35 51.58 28.70 11.74 15.00 25.35 59 E9a_E10a KnownJunction 0 48.45 25.78 66.64 15.62 7.98 8.01 13.96 46.91 23.90 35.73 161.99 35.86 32.79 187.77 157.36 144.75 95.28 90.95 56.66 37.71 71.66 39.01 90.91 60 E9a_E10b KnownJunction 0 0.00 0.00 2.22 0.00 0.00 0.00 0.00 0.00 0.00 1.67 5.21 0.00 0.00 7.48 5.32 0.00 0.00 2.53 0.00 0.00 0.00 0.00 0.00 61 I9 Intron 0 14.82 7.63 43.37 5.59 7.36 16.96 17.21 38.64 21.17 54.69 22.72 13.56 6.76 43.09 41.51 56.48 24.76 49.14 14.33 15.96 15.98 15.11 12.48 62 I9_AR1 ActiveIntronRegion 0 14.94 7.70 43.77 5.64 7.43 17.13 17.38 39.01 21.38 55.23 22.95 13.70 6.83 43.50 41.92 57.04 25.00 49.62 14.48 16.12 16.12 15.24 12.60 63 E10_Aa NovelBoundary 0 14.52 9.14 38.82 12.89 10.61 7.84 21.73 33.56 19.68 58.02 27.01 5.85 12.99 62.04 55.63 26.49 16.74 47.92 21.27 11.95 11.74 19.66 14.94 64 E10_Ab NovelBoundary 0 54.68 25.72 85.39 25.40 31.15 21.64 29.85 81.82 46.67 75.05 81.76 36.76 19.32 115.49 64.28 140.65 68.54 85.56 87.44 37.46 49.55 31.78 17.93 65 ER10a ExonRegion 0 43.48 17.47 61.71 14.12 15.69 14.59 17.03 52.48 23.69 35.24 124.76 32.27 25.37 144.10 106.56 129.96 77.12 70.21 59.94 31.33 57.00 30.97 47.65 66 ER10b ExonRegion 0 32.00 17.47 63.48 16.74 27.13 26.56 27.21 57.39 39.09 66.20 116.43 37.85 38.18 164.04 146.03 134.93 116.49 80.94 39.39 48.66 54.31 45.66 26.11 67 E10_Da NovelBoundary 0 10.22 11.45 26.08 8.02 0.00 2.90 21.60 39.72 23.87 32.96 22.16 0.00 0.00 22.54 24.97 26.15 26.37 22.68 0.00 18.66 21.75 2.45 0.00 68 E10a_E11a KnownJunction 0 41.64 15.26 58.75 22.71 9.85 9.60 13.73 43.83 30.03 45.99 96.29 6.15 33.11 147.04 95.19 98.69 131.56 79.67 43.01 43.46 55.54 38.64 44.22 69 I10 Intron 0 7.88 12.87 16.31 2.27 13.95 18.43 14.79 31.65 18.50 29.27 7.92 1.33 1.44 22.87 21.03 34.30 14.75 20.53 8.30 11.88 9.02 6.20 5.47 70 I10_AR1 ActiveIntronRegion 0 8.00 13.06 16.55 2.30 14.13 18.69 15.00 32.12 18.76 29.68 8.03 1.35 1.46 23.21 21.32 34.81 14.96 20.80 8.42 12.04 9.16 6.30 5.55 71 E11_Aa NovelBoundary 0 11.19 15.85 37.88 3.96 15.28 15.10 24.95 31.59 24.62 64.20 20.11 0.00 6.82 28.67 48.83 47.08 14.31 34.74 0.00 17.71 19.52 6.12 12.04 72 ER11a ExonRegion 0 48.33 24.08 107.37 26.30 28.05 42.35 45.12 74.44 53.55 110.09 118.63 24.98 35.00 189.23 150.39 172.44 144.36 119.55 56.23 64.13 69.33 45.21 55.16 73 E11a_E12a KnownJunction 0 89.72 41.44 140.30 38.29 50.51 82.85 58.43 81.29 66.00 147.02 137.03 37.81 26.46 230.80 183.20 214.82 201.87 146.45 52.43 84.37 94.64 59.83 63.17 74 ER12a ExonRegion 0 67.23 32.25 127.63 35.17 48.23 43.86 41.80 99.77 66.55 134.53 142.35 29.80 29.16 183.21 177.66 154.75 163.19 129.93 72.33 68.94 67.41 56.68 52.76 75 E12_Da NovelBoundary 0 22.52 9.01 32.64 9.19 3.99 15.33 12.76 19.47 4.43 19.18 12.58 6.30 6.82 9.89 22.75 26.57 12.81 42.16 0.00 20.90 10.50 2.88 3.84 76 E12a_E13a KnownJunction 0 10.22 9.21 5.82 0.00 0.00 7.95 1.81 12.61 4.34 11.04 2.58 0.00 6.17 12.36 9.52 4.19 9.54 10.82 4.61 11.19 5.31 3.12 0.00 77 E12a_E13b KnownJunction 0 62.68 57.75 134.03 44.52 77.67 61.73 60.64 132.38 69.24 130.71 117.45 36.01 55.52 237.68 180.36 157.48 160.73 149.07 91.30 96.71 53.25 48.80 61.21 78 E13_Aa NovelBoundary 0 27.93 6.71 31.31 3.26 3.48 5.11 14.57 14.05 4.92 14.37 27.01 0.00 0.00 33.79 60.33 52.89 14.31 18.78 0.00 8.88 11.74 17.57 4.35 79 E13_Ab NovelBoundary 0 38.30 8.09 37.52 3.66 11.71 12.32 14.71 40.46 24.48 31.89 36.90 12.45 5.84 50.97 62.43 24.18 25.99 35.11 16.57 26.27 20.26 5.82 8.11 80 ER13a ExonRegion 0 16.71 8.50 20.39 2.48 4.97 7.07 9.55 25.37 10.59 23.35 26.44 4.64 4.19 36.60 42.17 19.00 24.52 27.72 8.30 19.98 15.66 6.55 4.72 81 ER13b ExonRegion 0 77.25 47.48 141.72 35.23 33.26 34.33 54.93 130.52 71.31 150.63 136.05 34.46 57.71 233.33 212.96 183.40 156.84 129.29 69.95 89.86 85.30 53.82 67.01 82 E13_Da NovelBoundary 0 65.86 23.94 127.38 28.23 23.94 65.36 45.49 119.94 68.69 150.78 90.60 29.71 18.83 145.33 170.10 154.57 122.86 94.02 56.75 86.74 46.46 55.42 59.16 83 E13a_E14a KnownJunction 0 10.08 0.00 6.53 0.00 0.00 0.00 4.28 4.89 3.07 8.68 7.32 12.00 0.00 9.83 13.23 11.88 7.57 2.24 0.00 5.69 11.49 0.00 0.00 84 E13_Db NovelBoundary 1 32.67 6.45 41.48 8.22 20.46 2.50 39.22 43.91 37.24 38.60 58.86 12.00 13.64 58.57 56.99 54.00 4.77 76.61 21.84 33.43 20.14 11.27 26.12 85 E13b_E14a KnownJunction 0 24.52 25.19 82.67 17.05 31.92 16.47 20.23 63.95 56.89 99.50 134.77 18.61 32.30 144.45 104.46 96.30 146.80 90.16 34.82 46.92 29.34 24.06 49.77 86 ER13c ExonRegion 0 29.34 20.98 94.46 17.47 21.16 33.01 24.97 77.70 58.50 109.32 120.19 16.14 22.60 157.69 147.83 116.99 146.14 73.74 40.69 55.61 33.36 38.92 46.05 87 I13 Intron 0 15.63 7.50 8.98 1.25 13.15 15.78 17.90 11.08 3.39 11.55 21.38 15.81 7.12 33.52 56.31 38.35 22.31 19.77 13.70 15.69 24.37 11.52 7.22 88 I13_AR1 ActiveIntronRegion 0 16.02 7.68 9.18 1.28 13.48 16.16 18.31 11.31 3.48 11.79 21.86 16.14 7.30 34.27 57.60 39.30 22.82 20.23 14.04 16.08 24.92 11.81 7.40 89 E14_Aa NovelBoundary 0 22.37 11.38 79.68 20.91 23.26 31.80 33.92 69.09 42.48 90.26 75.76 18.76 34.58 71.52 95.56 76.73 63.30 92.98 13.65 32.41 42.13 19.17 7.77 90 ER14a ExonRegion 0 34.00 20.54 118.93 30.49 30.52 22.83 31.77 92.26 55.94 135.54 132.07 38.45 40.67 167.36 194.81 163.04 130.46 146.89 59.51 65.61 65.43 42.68 44.34 91 E14_Da KnownBoundary 0 47.56 15.39 119.42 31.70 72.24 66.78 63.82 84.53 60.82 128.21 127.35 25.21 18.99 169.64 109.77 163.72 122.95 178.25 60.14 48.90 64.50 25.60 64.79 92 ER14b ExonRegion 0 42.50 26.06 117.62 26.44 29.53 23.99 34.57 82.39 48.38 101.79 98.87 15.29 12.02 129.01 142.62 118.48 85.44 132.00 45.44 59.77 44.73 26.34 37.28