Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TMEM141 Gene 0 17.12 10.93 34.97 13.43 14.45 22.66 12.56 25.17 20.41 28.50 21.49 7.45 6.72 45.44 75.01 42.99 45.13 21.20 34.40 29.82 43.18 27.11 29.47 2 371683 Transcript 0 7.41 7.72 1.19 0.32 2.05 4.85 1.01 2.64 0.73 1.01 6.65 0.00 0.00 2.72 8.87 4.90 3.11 2.72 10.96 3.63 5.12 0.61 2.16 3 290079 Transcript 0 0.00 0.00 0.00 0.00 0.00 3.67 0.00 1.73 0.00 0.00 0.00 0.00 9.38 0.00 8.70 2.97 0.00 1.85 0.00 2.13 0.00 2.08 2.94 4 465017 Transcript 0 6.74 3.35 16.50 13.98 0.00 4.88 3.93 7.60 5.58 7.90 13.58 7.05 0.00 0.00 6.30 0.00 13.00 15.30 0.00 3.26 3.09 8.63 0.00 5 483187 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 479737 Transcript 0 1.00 0.33 1.91 1.17 0.74 4.13 0.51 2.91 1.36 4.81 0.76 0.04 0.00 1.52 4.99 2.92 0.88 3.40 3.84 3.67 2.42 0.63 1.12 7 456614 Transcript 0 1.33 1.58 6.00 1.13 0.96 5.29 0.29 5.73 8.63 2.02 0.10 0.00 0.39 0.53 2.07 0.15 1.02 1.35 0.37 0.36 5.16 0.35 0.49 8 484854 Transcript 0 4.02 0.52 0.97 1.36 0.66 1.24 0.24 0.66 0.74 2.70 1.91 0.75 0.98 4.66 9.25 14.73 3.69 4.40 6.69 3.00 4.43 0.58 3.72 9 489739 Transcript 0 1.78 0.98 3.03 1.71 1.31 2.94 1.52 3.06 2.19 4.26 1.44 0.20 0.08 2.41 6.01 5.23 1.30 3.60 3.50 3.59 2.36 1.76 3.60 10 ER1a ExonRegion 0 7.41 7.72 1.19 0.32 2.05 4.85 1.01 2.64 0.73 1.01 6.65 0.00 0.00 2.72 8.87 4.90 3.11 2.72 10.96 3.63 5.12 0.61 2.16 11 E1_Ab KnownBoundary 0 3.78 13.35 3.22 0.00 0.00 0.00 5.92 0.00 0.00 1.50 8.05 0.00 0.00 0.00 0.00 8.54 0.00 2.11 4.80 0.00 5.87 0.00 0.00 12 E1_Ac KnownBoundary 0 3.78 3.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 3.00 0.00 0.00 0.00 0.00 9.60 3.26 3.15 0.00 0.00 13 E1_Ad KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 E1_Ae KnownBoundary 0 105.20 26.71 5.38 0.00 99.49 124.13 56.04 0.00 0.00 3.33 24.11 0.00 0.00 6.00 25.22 51.70 56.85 20.60 33.32 45.64 46.89 31.11 99.79 15 ER1b ExonRegion 0 91.17 33.32 24.13 9.85 65.66 97.47 48.68 21.81 11.78 12.62 36.13 4.33 0.00 72.96 159.12 71.56 72.87 13.22 55.38 54.66 57.64 26.77 78.61 16 E1_Af KnownBoundary 0 195.81 114.39 117.50 53.87 196.69 273.71 156.29 66.33 44.99 70.41 72.49 5.85 0.00 134.21 286.67 272.24 245.54 67.36 250.55 175.26 143.63 129.57 214.94 17 ER1c ExonRegion 0 125.40 50.84 40.74 18.40 97.66 155.87 79.44 26.36 16.37 22.94 48.81 4.33 0.00 108.82 241.53 127.80 141.94 20.33 92.38 98.40 96.41 57.82 126.28 18 ER1d ExonRegion 0 152.69 71.47 64.59 23.56 141.43 188.62 108.00 38.03 25.06 39.32 62.68 4.33 0.00 138.05 322.45 180.88 178.72 34.05 147.89 124.32 126.24 87.21 168.23 19 ER1e ExonRegion 0 168.97 76.94 87.41 34.30 173.03 251.99 128.53 53.58 36.64 49.99 72.00 5.05 0.00 182.17 403.27 208.54 203.28 42.50 192.98 154.79 143.61 107.82 201.40 20 ER1f ExonRegion 0 174.86 76.02 93.03 38.68 176.81 261.67 130.77 60.23 42.37 56.20 73.75 6.33 0.00 156.91 321.15 208.05 212.53 45.77 184.51 154.01 147.14 114.43 210.31 21 E1_Da KnownBoundary 0 0.00 0.00 1.48 1.83 0.00 0.00 0.00 0.00 1.48 1.67 0.00 0.00 0.00 0.00 0.00 7.95 4.11 7.17 0.00 0.00 2.53 0.00 0.00 22 E1a_E1h KnownJunction 0 6.74 3.35 16.50 13.98 0.00 4.88 3.93 7.60 5.58 7.90 13.58 7.05 0.00 0.00 6.30 0.00 13.00 15.30 0.00 3.26 3.09 8.63 0.00 23 E1a_E1i KnownJunction 0 49.64 15.19 93.17 43.65 24.19 31.06 4.15 62.64 36.78 56.38 5.16 0.00 0.00 14.72 50.19 19.40 29.27 28.73 11.77 17.39 17.42 18.61 35.94 24 E1a_E1j KnownJunction 0 0.00 0.00 0.00 0.00 0.00 5.28 0.00 1.68 0.00 1.18 0.00 0.00 0.00 0.00 4.45 0.00 0.00 5.35 0.00 3.26 0.00 0.00 0.00 25 E1a_E1k KnownJunction 0 9.85 2.57 20.37 5.13 4.24 14.93 0.00 12.53 22.95 23.10 2.37 0.00 0.00 4.77 4.45 3.42 9.54 25.37 8.09 5.31 5.75 2.33 0.00 26 ER1g ExonRegion 0 101.38 56.84 96.38 40.34 114.79 168.07 78.71 65.51 45.14 58.95 48.81 4.33 0.00 72.76 153.77 136.42 145.24 43.98 142.39 104.68 97.51 91.99 131.86 27 ER1h ExonRegion 0 4.02 0.52 0.97 1.36 0.66 1.24 0.24 0.66 0.74 2.70 1.91 0.75 0.98 4.66 9.25 14.73 3.69 4.40 6.69 3.00 4.43 0.58 3.72 28 E1_Ah KnownBoundary 0 16.97 0.00 0.00 3.50 3.74 5.00 2.25 0.00 5.99 7.09 2.26 13.35 0.00 9.54 26.08 7.86 17.11 9.20 17.41 9.20 0.00 0.00 0.00 29 ER1i ExonRegion 0 7.94 0.84 6.80 4.70 2.86 5.67 1.92 5.25 3.01 7.02 7.82 5.91 1.43 10.24 17.31 7.20 6.02 5.76 6.07 8.74 10.55 3.60 3.56 30 E1_Ai KnownBoundary 0 10.82 0.00 11.21 7.26 4.16 14.03 7.64 11.42 3.24 11.39 16.37 0.00 5.84 31.02 44.50 4.27 17.02 2.07 4.24 18.09 18.53 5.69 4.35 31 ER1j ExonRegion 0 19.69 6.87 68.71 27.11 11.68 16.45 11.17 36.72 26.63 37.83 36.67 4.26 6.68 59.80 92.18 51.02 68.62 23.24 33.35 36.49 63.27 19.32 36.35 32 E1b_E1j NovelJunction 0 2.96 0.00 2.87 0.00 0.00 0.00 0.00 11.91 0.00 4.08 0.00 0.00 0.00 4.59 4.45 12.73 0.00 2.20 4.33 3.26 0.00 0.00 0.00 33 E1b_E1k KnownJunction 1 16.30 9.34 83.88 28.97 7.89 5.45 5.70 23.04 23.96 45.05 51.07 6.30 0.00 60.39 103.71 40.42 126.51 33.04 29.37 54.27 93.35 31.41 23.65 34 ER1k ExonRegion 0 2.00 0.67 3.82 2.34 1.48 2.98 1.02 4.13 2.72 8.43 1.51 0.08 0.00 3.05 5.53 5.84 1.77 1.46 7.68 4.08 4.84 1.26 2.25 35 E1_Ak KnownBoundary 0 0.00 0.00 6.42 2.06 3.99 8.40 12.59 9.69 4.98 6.45 0.00 0.00 0.00 2.47 8.90 8.54 0.00 9.04 11.77 9.08 8.53 2.76 4.01 36 ER1l ExonRegion 0 17.06 10.61 113.77 39.15 8.00 12.77 11.64 73.32 44.67 75.70 82.46 18.31 14.07 126.09 233.85 131.81 186.72 71.37 75.83 91.67 141.28 84.37 103.53 37 E1_Dc KnownBoundary 0 3.78 0.00 4.55 0.00 0.00 0.00 1.99 1.81 1.62 9.11 2.47 0.00 0.00 2.47 0.00 4.36 3.93 0.00 0.00 0.00 0.00 2.88 0.00 38 E1c_E1l KnownJunction 1 9.63 3.22 144.79 49.54 14.09 14.42 13.34 89.75 63.34 86.20 42.80 17.11 13.64 118.90 392.61 217.98 100.61 79.22 110.03 80.41 82.41 137.41 188.65 39 ER1m ExonRegion 0 1.78 0.98 3.03 1.71 1.31 2.94 1.52 3.06 2.19 4.26 1.44 0.20 0.08 2.41 6.01 5.23 1.30 3.60 3.50 3.59 2.36 1.76 3.60 40 E1_Al KnownBoundary 0 7.56 0.00 1.83 1.60 0.00 10.05 12.85 8.01 4.63 7.25 2.47 0.00 0.00 2.47 11.37 8.20 0.00 3.69 0.00 11.51 0.00 0.00 0.00 41 ER1n ExonRegion 0 18.65 17.42 124.68 40.00 58.95 80.17 39.45 80.27 70.45 102.94 66.25 18.73 14.07 129.09 215.64 128.74 134.43 65.06 96.47 86.67 127.24 69.52 96.82 42 E1_Dd NovelBoundary 1 17.86 8.22 69.78 18.41 42.95 65.36 21.64 45.88 38.69 52.73 17.32 11.25 6.82 63.81 82.08 41.95 93.22 26.03 46.21 32.28 62.70 14.21 44.99 43 E1e_E2a KnownJunction 0 35.56 19.08 111.68 21.68 96.52 130.55 64.96 73.69 52.63 77.95 94.23 36.16 26.30 119.25 193.83 61.10 116.04 51.61 69.37 57.40 125.96 43.97 81.01 44 E1e_E3a KnownJunction 0 3.33 2.50 14.84 3.60 4.33 21.46 0.00 14.91 25.95 5.80 0.00 0.00 0.00 0.00 8.90 0.00 4.49 2.57 0.00 0.00 16.68 0.00 0.00 45 ER1o ExonRegion 1 31.92 17.45 114.98 24.87 75.81 128.37 48.55 81.09 71.43 87.55 77.48 24.89 20.71 125.33 190.76 58.95 127.91 56.66 67.95 56.38 134.98 39.93 73.42 46 ER2a ExonRegion 0 37.64 32.94 103.32 28.86 55.14 98.67 46.36 69.31 61.05 78.93 67.35 33.96 29.80 151.84 196.43 76.93 103.75 71.92 63.27 71.96 125.35 64.26 67.66 47 E2_Da KnownBoundary 0 47.56 73.67 97.75 33.20 38.71 75.47 50.21 69.58 66.87 75.00 45.85 30.46 18.51 153.57 195.93 98.26 92.66 79.13 81.98 63.28 146.78 88.73 79.22 48 ER2b ExonRegion 0 83.76 62.98 98.44 34.53 30.73 60.68 47.50 72.28 61.76 88.90 56.64 31.36 40.50 162.90 227.79 196.07 149.04 92.39 108.50 82.79 170.82 119.46 93.53 49 E2_Db KnownBoundary 0 139.73 40.52 71.88 26.60 25.30 42.65 56.40 65.88 39.70 76.50 61.12 37.21 46.75 155.22 225.60 254.04 152.31 76.69 130.83 94.02 134.49 131.59 87.67 50 ER2c ExonRegion 0 31.93 23.14 60.98 28.92 17.23 25.81 19.19 49.12 39.62 59.84 39.42 19.03 17.54 99.38 157.04 81.58 84.07 40.32 76.24 59.85 82.13 64.21 45.78 51 E2_Dc NovelBoundary 0 3.48 11.77 6.71 8.76 0.00 10.11 0.00 13.84 14.35 9.62 7.79 0.00 0.00 4.59 4.94 3.85 8.60 21.64 20.99 11.19 0.00 2.82 0.00 52 ER2d ExonRegion 0 0.00 0.00 0.00 0.00 0.00 3.67 0.00 1.73 0.00 0.00 0.00 0.00 9.38 0.00 8.70 2.97 0.00 1.85 0.00 2.13 0.00 2.08 2.94 53 Ix Intron 0 9.60 14.24 18.48 15.40 9.80 23.15 10.42 24.39 20.70 17.23 1.96 3.96 0.98 4.25 6.80 3.02 3.71 15.32 19.52 23.77 13.91 2.12 5.65 54 Ix_SR1 SilentIntronRegion 0 8.14 15.62 17.98 16.63 11.11 21.93 12.04 23.39 22.23 18.73 2.39 5.13 1.17 4.20 8.75 3.78 3.72 15.53 20.27 25.18 13.94 2.47 6.14 55 Ix_AR2 ActiveIntronRegion 0 11.90 12.09 19.29 13.48 7.76 25.10 7.89 26.00 18.32 14.91 1.29 2.12 0.69 4.34 3.72 1.82 3.70 15.03 18.38 21.60 13.89 1.56 4.87 56 Ix_SR1 SilentIntronRegion 0 3.81 3.47 14.19 5.39 2.54 4.35 5.02 8.06 6.80 5.83 0.55 0.34 0.00 2.08 3.53 0.56 2.19 6.19 7.54 3.63 4.39 2.37 1.39 57 ER3a ExonRegion 0 1.30 2.80 9.06 1.40 0.61 8.64 0.55 8.64 14.87 4.98 0.00 0.00 0.00 0.97 1.66 0.00 0.65 4.12 1.17 0.87 9.50 0.87 0.99 58 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59 ER4a ExonRegion 0 2.72 1.77 5.32 1.15 0.81 0.73 0.00 6.40 7.91 0.33 0.00 0.00 0.00 0.54 0.62 0.00 0.00 0.00 0.59 0.00 1.48 0.63 0.77 60 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61 ER5a ExonRegion 0 0.63 2.44 6.78 0.61 0.00 0.93 1.19 4.40 3.05 1.03 0.58 0.00 2.32 1.69 1.23 0.89 0.99 1.38 0.49 1.28 3.31 0.63 1.17