Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP11-544A12.1 Gene 0 4.01 5.53 1.65 2.51 5.29 1.06 7.20 3.61 4.09 5.07 0.80 3.02 7.86 0.30 3.73 3.92 5.71 2.81 3.15 5.43 0.91 0.34 5.81 2 417798 Transcript 0 2.77 1.72 0.54 1.04 3.94 4.10 8.77 2.58 2.40 2.60 1.24 1.57 8.06 0.02 1.76 2.02 3.08 1.92 3.07 1.95 0.37 0.00 2.87 3 415391 Transcript 0 4.30 5.38 2.00 2.22 5.44 0.29 3.11 3.22 2.86 3.98 0.30 3.51 2.42 0.39 3.76 5.58 4.13 2.31 2.49 4.65 1.03 0.65 5.51 4 ER1a ExonRegion 0 1.86 2.38 1.07 2.08 3.92 0.54 5.29 3.74 3.95 5.19 1.31 3.14 9.19 0.05 3.52 0.43 6.17 2.08 1.03 3.90 0.65 0.00 3.31 5 E1_Ab KnownBoundary 0 0.00 0.00 0.00 2.06 0.00 0.00 15.68 4.03 4.28 4.19 2.42 0.00 6.66 0.00 8.90 4.36 4.58 0.00 9.60 9.27 0.00 0.00 3.33 6 ER1b ExonRegion 0 2.06 6.61 1.19 2.98 3.48 0.00 10.47 2.55 4.59 5.35 0.43 1.16 10.52 0.32 2.25 1.46 7.11 2.48 3.00 7.41 0.00 0.00 6.81 7 E1_Da NovelBoundary 0 0.00 2.50 0.00 0.00 7.05 0.00 5.21 4.03 4.22 6.02 2.42 0.00 26.95 0.00 0.00 0.00 0.00 0.00 0.00 6.33 0.00 0.00 4.35 8 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 E2_Aa NovelBoundary 0 78.75 206.21 88.05 60.60 116.72 94.55 191.18 129.71 120.34 223.81 303.71 263.79 379.20 224.21 84.68 189.27 315.38 163.95 120.00 184.59 146.66 132.57 129.50 10 ER2a ExonRegion 0 3.40 1.87 0.01 0.00 1.78 2.86 5.87 0.98 1.70 0.96 0.70 0.00 6.58 0.00 1.11 2.16 0.00 1.90 3.62 0.06 1.08 0.00 0.95 11 E2_Da NovelBoundary 0 10.89 0.00 0.00 0.00 8.15 14.25 24.33 7.15 8.85 11.44 0.00 6.30 6.82 0.00 0.00 4.02 0.00 2.07 9.04 0.00 0.00 0.00 4.27 12 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E2_Db NovelBoundary 0 14.15 6.58 3.05 0.00 0.00 0.00 6.05 2.55 3.59 6.61 2.42 0.00 20.45 0.00 0.00 0.00 4.77 4.23 0.00 9.33 0.00 0.00 0.00 14 ER2b ExonRegion 0 3.68 1.06 0.00 0.00 3.96 7.65 12.26 1.43 0.86 0.00 1.18 0.00 6.93 0.00 0.00 3.62 0.00 1.77 5.12 0.00 0.10 0.00 2.43 15 Ix Intron 1 14.78 9.43 8.14 6.36 7.10 2.10 17.38 13.65 11.86 11.53 3.38 28.44 50.86 9.10 12.41 17.00 24.45 6.31 11.32 20.37 4.51 7.78 8.32 16 Ix_SR3 SilentIntronRegion 0 20.78 10.66 7.48 10.37 4.71 2.55 15.75 23.46 22.30 20.57 4.02 41.06 74.61 12.62 16.34 32.01 45.91 14.44 24.20 30.37 12.64 12.12 17.18 17 Ix_AR2 ActiveIntronRegion 0 30.87 12.03 19.30 19.08 21.41 2.60 25.27 48.11 40.14 29.82 5.32 63.50 150.08 15.29 26.59 64.89 38.51 25.25 29.20 49.11 13.96 12.15 21.29 18 Ix_SR2 SilentIntronRegion 0 20.98 20.86 14.85 13.01 16.82 1.20 51.41 35.05 18.92 19.05 4.13 46.47 123.71 11.59 13.67 25.51 25.98 10.59 20.56 37.14 2.84 14.05 13.81 19 Ix_AR1 ActiveIntronRegion 0 19.72 9.73 11.43 7.07 4.60 0.67 12.94 11.55 13.73 13.44 4.96 24.69 51.17 10.53 11.32 18.00 29.79 4.24 12.13 24.83 4.96 8.78 8.12 20 Ix Intron 0 14.70 5.36 5.34 6.87 7.59 1.09 16.94 8.21 6.68 4.06 6.46 24.18 37.37 7.07 12.61 15.22 25.91 4.89 8.68 15.90 6.34 5.22 7.62 21 Ix_SR2 SilentIntronRegion 0 22.95 8.17 6.01 5.87 10.10 1.33 19.03 12.83 9.90 5.49 8.22 38.11 72.83 7.07 18.48 14.33 29.69 4.13 9.98 19.31 5.30 8.03 4.25 22 Ix_AR5 ActiveIntronRegion 0 10.80 2.65 2.83 6.33 7.31 1.27 12.48 4.28 5.59 2.32 6.78 10.45 10.34 8.34 9.03 19.08 35.27 10.33 13.32 13.12 16.38 3.26 16.84 23 Ix_AR4 ActiveIntronRegion 0 10.70 3.40 5.63 6.81 6.23 1.20 15.53 5.12 2.09 1.15 5.20 28.97 29.40 7.68 8.15 20.80 39.93 13.68 4.17 14.77 6.70 6.13 11.07 24 Ix_AR3 ActiveIntronRegion 0 8.62 5.41 4.66 10.21 12.40 1.79 25.54 3.37 3.55 4.00 10.94 43.82 49.42 6.77 9.69 11.60 26.41 7.75 7.61 10.69 7.47 2.29 8.17 25 Ix_AR2 ActiveIntronRegion 0 8.09 3.59 5.69 13.39 7.40 1.83 26.32 4.07 4.87 4.59 17.17 28.27 45.80 6.02 8.02 11.71 22.14 5.11 11.99 9.26 4.15 1.35 7.08 26 Ix_SR1 SilentIntronRegion 0 17.21 5.48 5.84 9.44 6.35 0.11 20.19 8.09 4.47 2.86 5.57 19.62 30.26 8.34 11.04 15.32 21.75 3.18 7.53 15.24 2.06 4.47 6.79 27 Ix_AR1 ActiveIntronRegion 0 8.71 3.53 5.85 2.35 2.71 2.39 20.99 12.36 4.77 4.57 8.11 18.69 32.00 8.33 13.82 14.74 28.23 5.74 9.87 19.71 8.62 3.02 7.49 28 Ix_AR1 ActiveIntronRegion 0 22.12 14.17 4.58 6.23 14.54 1.79 13.45 9.69 6.41 11.19 1.89 4.26 8.07 1.54 8.47 7.04 9.20 5.51 6.66 11.85 5.83 1.74 9.41 29 E3_Aa NovelBoundary 0 8.89 19.47 6.27 3.40 20.29 0.00 8.74 13.97 10.01 22.89 0.00 0.00 6.82 2.24 13.35 4.19 0.00 11.57 0.00 8.88 3.09 2.27 3.93 30 ER3a ExonRegion 0 8.61 10.77 3.99 4.45 10.88 0.57 6.21 6.44 5.73 7.96 0.60 7.01 4.83 0.78 7.53 11.16 8.26 4.61 4.98 9.29 2.07 1.30 11.03