Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C9orf96 Gene 0 2.50 4.22 4.50 5.46 3.41 4.40 3.63 5.20 5.05 5.05 1.19 1.44 2.65 2.00 2.69 1.72 2.17 4.81 7.39 5.08 5.04 1.93 3.93 2 371957 Transcript 0 0.99 1.22 0.68 1.06 0.48 0.57 0.79 0.91 0.92 0.85 0.12 0.49 0.00 0.61 0.73 0.60 0.21 1.20 1.37 1.05 2.42 1.29 0.81 3 426926 Transcript 0 0.60 0.00 0.00 0.57 2.15 0.00 1.88 2.28 1.87 2.48 0.00 0.00 0.00 2.17 0.00 0.00 1.87 1.83 0.90 0.60 0.00 3.01 3.33 4 371955 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 468046 Transcript 0 6.75 13.17 5.33 7.71 9.00 10.73 11.99 7.82 5.09 7.66 3.96 6.19 13.82 9.31 8.80 8.44 8.42 8.52 15.29 14.28 10.52 4.79 13.28 6 475232 Transcript 0 0.70 1.34 0.30 2.67 1.76 1.51 1.09 1.27 0.30 1.66 0.00 0.00 0.00 0.71 0.00 0.00 0.54 0.30 1.57 2.45 2.16 0.34 0.48 7 462310 Transcript 0 1.28 0.74 2.43 2.97 0.32 0.00 0.70 2.25 1.08 2.07 0.00 0.00 0.00 0.20 0.00 0.00 0.00 1.33 2.27 1.55 0.94 0.00 0.71 8 477284 Transcript 0 0.79 1.63 2.26 3.22 1.07 1.56 0.55 1.79 2.00 3.57 0.00 0.00 0.00 0.00 0.00 0.18 0.00 1.40 4.76 1.87 1.82 2.25 0.36 9 418504 Transcript 0 0.00 0.00 0.00 1.58 0.00 0.92 0.77 4.41 0.72 0.25 0.00 0.00 0.00 1.67 1.06 0.84 4.55 1.30 1.89 0.00 1.55 0.03 1.15 10 ER1a ExonRegion 0 2.75 3.50 0.00 0.38 0.00 2.73 0.85 0.00 0.79 0.00 0.00 0.00 0.00 2.73 0.00 2.47 0.00 3.38 3.59 4.71 1.88 0.00 2.75 11 E1_Ab KnownBoundary 0 7.11 8.88 1.69 1.43 0.00 7.38 3.97 0.00 1.74 1.26 0.00 0.00 0.00 2.18 0.00 3.76 0.00 14.80 8.09 11.89 2.41 0.00 8.37 12 ER1b ExonRegion 0 1.32 3.14 1.90 2.28 0.93 4.85 2.07 3.69 2.73 4.24 0.67 0.00 0.00 2.53 1.72 0.61 0.00 13.39 2.28 5.01 6.24 1.45 6.27 13 E1a_E2a KnownJunction 0 0.00 0.00 0.00 3.76 0.00 0.00 0.00 3.86 5.79 6.34 0.00 0.00 0.00 2.47 0.00 4.19 0.00 10.69 13.37 6.46 9.02 0.00 7.17 14 E2_Ac NovelBoundary 0 0.00 14.87 3.64 18.65 11.21 5.45 4.02 6.16 10.71 5.69 2.16 0.00 0.00 2.47 0.00 2.99 0.00 10.65 17.22 5.88 2.90 2.57 3.50 15 ER2a ExonRegion 0 0.00 4.07 0.00 5.45 0.00 1.83 1.32 1.73 6.18 6.88 0.00 0.00 0.00 3.25 0.00 2.97 0.00 14.78 6.37 10.64 6.61 0.00 6.85 16 ER2b ExonRegion 0 0.00 7.71 2.58 6.38 6.20 3.76 3.21 3.91 5.72 4.35 1.12 0.00 0.00 2.74 0.00 2.97 0.00 13.32 13.41 8.40 6.61 1.32 4.02 17 ER2c ExonRegion 0 0.68 5.48 7.62 7.42 8.64 12.55 6.62 9.44 4.33 5.06 2.41 0.00 3.03 3.70 2.10 3.29 0.05 16.83 9.65 8.64 9.36 1.73 8.49 18 E2a_E3a KnownJunction 0 3.78 0.00 10.67 7.16 0.00 20.16 3.89 12.65 5.03 5.51 2.16 0.00 0.00 7.77 12.61 3.50 0.00 17.24 4.61 12.59 13.96 2.76 12.63 19 ER3a ExonRegion 0 1.41 3.21 11.85 10.93 8.80 14.59 1.88 12.98 13.09 11.42 1.98 0.00 0.00 5.85 7.09 4.36 4.62 14.99 8.99 11.58 12.98 6.53 8.55 20 E3_Da KnownBoundary 0 0.00 2.57 14.78 14.68 12.39 4.54 2.25 13.84 6.42 11.04 2.42 0.00 0.00 4.83 9.64 4.36 4.58 14.76 13.27 12.40 8.59 3.12 0.00 21 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 E3a_E5a KnownJunction 0 0.00 3.35 0.00 0.00 7.13 2.90 0.00 0.00 14.38 5.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 3.95 2.94 0.00 5.76 0.00 23 ER3b ExonRegion 0 6.75 13.17 5.33 7.71 9.00 10.73 11.99 7.82 5.09 7.66 3.96 6.19 13.82 9.31 8.80 8.44 8.42 8.52 15.29 14.28 10.52 4.79 13.28 24 ER4a ExonRegion 0 1.39 2.68 0.60 5.35 3.52 3.02 2.18 2.54 0.61 3.31 0.00 0.00 0.00 1.43 0.00 0.00 1.09 0.61 3.14 4.90 4.32 0.69 0.97 25 E4_Da NovelBoundary 0 6.45 0.00 1.66 11.52 0.00 0.00 3.89 0.00 2.78 12.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.95 3.86 5.88 16.80 0.00 3.84 26 ER5a ExonRegion 0 0.00 0.62 0.85 7.20 3.03 6.72 2.14 0.67 13.64 7.69 0.00 0.00 0.00 0.02 0.00 0.00 0.13 2.02 7.01 3.26 3.06 5.17 1.17 27 E5_Da NovelBoundary 0 0.00 0.00 1.48 7.39 0.00 2.67 2.16 9.24 6.80 1.40 2.68 0.00 0.00 0.00 0.00 0.00 0.00 11.23 13.74 5.18 2.90 0.00 0.00 28 E5a_E6a KnownJunction 0 0.00 0.00 3.37 3.83 4.33 9.37 4.20 3.82 9.06 7.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 0.00 7.90 4.35 29 ER6a ExonRegion 0 0.00 3.05 1.20 2.93 5.33 6.45 3.73 4.37 9.77 6.36 0.00 0.00 0.00 1.18 1.02 0.00 1.55 1.49 7.93 2.13 4.32 2.35 2.45 30 E6_Da NovelBoundary 0 0.00 0.00 4.49 9.79 0.00 2.67 0.00 9.45 7.78 7.25 2.68 0.00 0.00 0.00 0.00 0.00 0.00 21.31 8.38 6.46 11.24 2.76 3.67 31 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 3.82 0.00 0.00 2.55 2.95 2.61 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 3.76 32 E6a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 E7_Aa NovelBoundary 0 0.00 0.00 7.13 14.58 3.90 0.00 4.37 10.27 12.90 7.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.92 13.65 11.95 2.35 3.12 8.71 34 ER7a ExonRegion 0 1.20 0.00 0.00 1.14 0.48 0.00 3.75 2.02 0.78 2.36 0.00 0.00 0.00 1.86 0.00 0.00 3.74 3.65 1.81 1.21 0.00 2.89 2.90 35 E7_Da NovelBoundary 0 3.78 3.29 6.03 5.89 0.00 2.90 0.00 9.16 10.56 11.71 0.00 0.00 0.00 2.53 4.45 0.00 0.00 8.04 4.80 3.07 9.02 2.39 12.21 36 I7 Intron 0 2.34 3.17 2.49 4.49 0.70 6.31 1.98 9.20 8.37 11.44 0.25 1.67 0.25 0.61 1.46 0.58 0.00 9.97 10.97 5.53 8.30 1.63 4.01 37 I7_AR1 ActiveIntronRegion 0 2.34 3.17 2.49 4.49 0.70 6.32 1.98 9.22 8.38 11.45 0.25 1.67 0.25 0.61 1.47 0.58 0.00 9.98 10.98 5.54 8.31 1.63 4.01 38 E8_Aa NovelBoundary 0 0.00 0.00 4.79 0.00 3.90 4.71 0.00 5.75 5.30 13.89 2.68 0.00 0.00 0.00 0.00 0.00 4.11 10.65 0.00 8.31 8.53 5.88 4.18 39 ER8a ExonRegion 0 1.52 1.46 0.07 0.00 0.04 0.00 0.52 0.00 2.47 1.58 0.00 0.00 2.77 0.96 0.69 0.00 0.00 1.90 4.53 6.17 6.21 1.50 0.00 40 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 3.48 0.00 2.25 0.00 0.00 1.58 0.00 0.00 0.00 0.00 4.45 0.00 0.00 2.32 0.00 0.00 0.00 0.00 0.00 41 E8a_E10b NovelJunction 0 0.00 3.35 3.67 0.00 0.00 8.18 2.25 5.59 4.51 10.05 0.00 0.00 0.00 0.00 4.45 0.00 0.00 11.73 0.00 5.75 8.46 0.00 0.00 42 ER9a ExonRegion 0 2.79 2.68 5.58 2.68 3.51 0.00 0.26 1.21 0.05 2.77 0.85 0.00 0.00 0.59 1.38 0.00 0.00 5.72 2.83 2.77 1.04 1.83 2.58 43 E9a_E10b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 44 ER10a ExonRegion 0 1.28 0.74 2.43 2.97 0.32 0.00 0.70 2.25 1.08 2.07 0.00 0.00 0.00 0.20 0.00 0.00 0.00 1.33 2.27 1.55 0.94 0.00 0.71 45 E10_Ab KnownBoundary 0 0.00 0.00 1.39 3.33 0.00 0.00 3.44 1.85 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.23 9.32 0.00 5.81 0.00 0.00 46 ER10b ExonRegion 0 1.22 2.40 4.31 2.96 6.80 3.08 2.20 4.31 6.98 5.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.46 11.28 2.81 9.64 1.01 1.59 47 E10a_E12a KnownJunction 0 3.56 5.00 2.66 2.00 3.14 0.00 6.18 12.16 4.11 8.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 13.18 0.00 9.33 0.00 3.76 48 ER11a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.87 0.58 0.00 1.45 0.00 49 E11a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.76 0.00 0.00 3.12 0.00 50 ER12a ExonRegion 0 3.72 2.91 11.30 6.00 3.57 8.83 2.76 7.63 12.61 8.80 0.00 0.00 1.20 0.42 0.64 0.22 0.00 9.77 12.49 4.75 8.47 5.29 3.87 51 E12_Da KnownBoundary 0 0.00 2.96 14.49 11.52 6.79 12.21 6.40 8.21 0.00 3.95 0.00 0.00 0.00 0.00 0.00 3.67 0.00 13.14 12.52 7.99 0.00 8.51 7.43 52 E12a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.14 0.00 0.00 0.00 0.00 0.00 53 E12a_E15a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.11 4.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.91 3.58 0.00 9.14 0.00 4.10 54 ER12b ExonRegion 0 2.43 8.83 9.98 10.21 10.90 24.33 3.78 9.44 6.48 10.60 0.00 0.00 0.00 0.00 2.55 2.83 0.00 9.73 18.34 6.90 1.13 6.71 9.17 55 E12_Db KnownBoundary 0 7.33 19.34 6.12 8.79 12.82 33.67 4.28 8.75 10.21 13.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 18.73 6.33 2.84 5.82 7.85 56 ER12c ExonRegion 0 2.37 4.90 6.77 9.66 3.20 4.68 1.65 5.36 5.88 10.50 0.00 0.00 0.00 0.00 0.00 0.54 0.00 4.20 9.66 5.04 5.47 2.17 1.07 57 ER13a ExonRegion 0 0.82 2.36 3.53 2.32 0.00 2.93 0.00 2.01 3.56 7.32 0.75 0.00 0.00 0.00 1.13 0.00 0.00 1.68 3.62 2.48 0.00 1.62 1.14 58 E13_Da NovelBoundary 0 3.33 2.96 11.27 9.59 0.00 4.66 2.21 1.60 15.34 7.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.72 0.00 4.35 59 E13a_E14a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 60 ER14a ExonRegion 0 0.00 0.02 1.25 1.20 3.25 1.00 0.00 3.13 0.04 0.96 0.00 2.16 0.00 0.00 0.00 0.00 0.00 1.61 3.87 0.00 0.00 0.00 0.00 61 E14_Da NovelBoundary 0 3.41 0.00 5.88 4.73 8.66 2.90 10.33 2.55 7.41 2.42 2.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.21 0.00 2.41 0.00 0.00 62 E14a_E15a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 63 ER15a ExonRegion 0 1.85 0.00 6.27 3.60 0.00 3.20 0.58 2.25 5.10 2.18 0.00 1.55 0.00 0.50 1.04 0.00 0.00 2.40 1.39 0.00 5.14 1.05 0.00 64 E15_Da NovelBoundary 0 0.00 0.00 1.42 6.49 3.74 2.78 4.06 2.55 3.24 3.76 0.00 5.70 0.00 4.71 4.45 0.00 0.00 2.28 17.22 2.88 0.00 2.69 0.00 65 E15a_E16a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.84 2.39 0.00 66 E15a_E18b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 67 ER16a ExonRegion 0 0.00 0.74 1.33 3.70 2.87 0.00 1.44 0.92 2.66 0.75 0.00 1.29 0.00 0.48 0.74 0.00 0.00 1.00 4.61 0.77 3.69 0.64 2.12 68 E16a_E17a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 69 ER17a ExonRegion 0 3.20 3.10 2.73 2.30 0.04 0.69 2.48 2.79 2.09 3.19 0.73 1.64 0.00 0.43 3.65 1.12 1.25 2.83 0.00 0.80 2.95 1.82 0.00 70 E17a_E18b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 2.88 0.00 71 E18_Aa NovelBoundary 0 0.00 0.00 5.71 8.02 0.00 2.44 3.84 8.38 7.64 4.08 0.00 0.00 0.00 0.00 4.45 0.00 0.00 5.51 0.00 9.33 8.34 0.00 0.00 72 ER18a ExonRegion 0 0.00 0.00 0.00 1.58 0.00 0.92 0.77 4.41 0.72 0.25 0.00 0.00 0.00 1.67 1.06 0.84 4.55 1.30 1.89 0.00 1.55 0.03 1.15 73 E18_Ab KnownBoundary 0 0.00 0.00 0.00 2.93 0.00 5.28 1.81 9.53 2.89 1.24 0.00 0.00 0.00 2.47 8.90 4.36 0.00 0.00 3.67 0.00 0.00 0.00 8.54 74 ER18b ExonRegion 0 1.69 0.81 2.18 3.90 1.07 3.12 2.22 4.62 10.37 2.57 0.00 1.73 3.08 0.75 4.71 1.88 1.32 8.63 1.44 0.85 6.16 0.55 1.86 75 E18a_E19a KnownJunction 0 0.00 0.00 0.00 4.13 0.00 0.00 0.00 1.77 2.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.09 0.00 3.33 76 ER19a ExonRegion 0 1.67 0.00 1.44 3.25 1.06 2.47 2.08 4.74 3.65 2.71 0.76 0.00 1.53 0.00 0.00 1.18 2.58 1.89 4.99 4.07 4.32 0.82 2.14 77 E19a_E20a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 5.00 0.00 4.11 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.36 3.15 0.00 0.00 78 ER20a ExonRegion 0 3.05 1.95 5.20 4.02 0.97 2.76 3.35 7.69 6.15 4.80 2.10 0.00 2.79 0.00 5.62 1.08 5.99 1.99 11.57 4.18 3.56 0.00 5.54 79 E20_Da NovelBoundary 0 0.00 0.00 1.71 3.60 0.00 0.00 2.25 5.09 2.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.78 5.14 4.05 6.26 2.59 0.00 0.00 80 E20a_E21a KnownJunction 0 0.00 3.16 3.55 3.36 0.00 2.90 0.00 16.43 3.07 3.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 3.59 81 E21_Aa NovelBoundary 0 3.78 0.00 14.22 18.31 4.33 2.90 4.02 2.22 4.28 1.37 0.00 0.00 0.00 0.00 8.90 0.00 0.00 5.06 3.86 5.75 3.15 0.00 0.00 82 ER21a ExonRegion 0 2.56 4.95 7.18 8.77 3.23 3.37 3.84 8.44 7.41 5.49 2.10 1.81 1.77 0.92 3.49 0.72 1.99 3.49 8.65 5.10 4.65 1.13 2.98