Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C9orf126 Gene 0 27.77 78.82 30.59 44.20 41.11 43.48 42.21 39.52 56.37 46.88 23.44 40.60 37.57 17.66 15.77 26.79 25.22 29.77 26.21 45.03 17.85 20.74 17.97 2 468569 Transcript 0 8.77 12.14 4.42 3.06 9.76 5.18 8.76 4.82 5.39 4.38 5.34 2.50 6.09 1.36 7.31 13.08 5.92 5.28 7.02 9.69 4.76 1.37 4.94 3 373549 Transcript 0 3.33 13.94 6.15 8.79 0.00 2.38 3.97 1.89 3.79 9.89 17.11 0.00 0.00 4.53 8.90 0.00 17.86 6.84 0.00 21.48 5.56 2.82 3.84 4 336505 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 477186 Transcript 0 0.00 0.00 1.24 1.40 0.00 2.67 0.00 0.00 1.30 3.33 0.00 6.00 0.00 0.00 0.00 0.00 0.00 0.00 3.67 0.00 2.53 0.00 0.00 6 414134 Transcript 0 17.47 48.06 18.71 27.31 26.18 26.56 24.48 24.97 32.96 28.53 13.97 22.18 20.71 9.90 9.62 14.25 15.39 15.76 14.88 26.21 9.01 11.80 10.05 7 487795 Transcript 0 15.57 16.66 6.00 8.22 4.62 1.06 11.58 9.03 4.78 6.84 1.79 2.11 2.52 0.23 3.91 5.38 5.67 2.14 1.71 5.03 1.71 1.88 2.74 8 467917 Transcript 0 1.49 9.30 4.08 6.99 6.53 1.31 7.42 2.60 6.59 3.73 5.48 3.74 4.92 6.37 0.81 7.22 3.47 5.75 5.06 7.01 8.29 3.21 0.70 9 494102 Transcript 0 3.39 6.91 2.52 4.01 1.77 6.51 7.89 3.91 3.98 5.28 6.73 7.08 14.41 7.07 6.93 7.86 8.08 5.96 6.37 6.68 6.45 2.07 4.34 10 ER1a ExonRegion 0 4.81 15.53 0.00 0.12 6.57 5.67 9.03 0.63 1.01 2.19 8.08 0.00 0.00 1.18 7.65 11.89 6.60 0.34 0.00 7.74 7.21 2.46 2.94 11 ER1b ExonRegion 0 27.04 35.47 0.00 1.36 16.05 16.30 22.65 3.46 2.47 6.88 22.55 0.00 0.00 8.12 20.31 39.96 23.47 3.90 3.19 19.15 26.20 4.17 10.12 12 ER1c ExonRegion 0 19.21 21.55 3.70 3.94 9.76 9.73 14.81 5.69 3.29 8.06 15.10 1.78 0.69 4.76 7.59 22.44 17.05 9.09 6.06 13.93 22.56 2.88 7.60 13 E1a_E2a KnownJunction 0 9.93 11.25 10.47 6.39 0.00 7.95 1.94 10.10 2.72 8.73 9.79 0.00 6.82 7.48 4.45 8.46 12.90 9.37 4.24 8.31 6.18 5.51 0.00 14 ER2a ExonRegion 0 9.03 13.33 14.02 10.12 0.77 2.85 9.06 11.14 10.21 20.85 29.98 5.97 13.13 6.79 19.86 16.51 23.91 12.24 13.94 32.01 18.36 3.24 2.28 15 E2_Da KnownBoundary 0 3.41 0.00 0.00 0.00 0.00 0.00 14.44 3.94 2.98 6.80 2.47 0.00 0.00 0.00 0.00 3.85 3.83 0.00 12.24 2.94 5.00 0.00 4.35 16 E2a_E3b KnownJunction 0 3.33 13.94 6.15 8.79 0.00 2.38 3.97 1.89 3.79 9.89 17.11 0.00 0.00 4.53 8.90 0.00 17.86 6.84 0.00 21.48 5.56 2.82 3.84 17 E2a_E4a KnownJunction 0 7.56 12.83 7.89 7.96 0.00 0.00 4.15 12.94 19.47 17.97 57.33 21.01 25.49 7.30 23.61 19.57 35.62 17.82 7.34 26.97 48.25 2.82 0.00 18 ER2b ExonRegion 0 12.73 8.75 8.85 6.00 12.96 4.69 8.50 9.00 9.76 6.57 2.60 5.00 12.18 1.54 6.97 14.28 5.24 10.23 14.04 11.64 2.30 0.28 6.95 19 E2_Db NovelBoundary 0 97.65 84.85 109.49 117.93 50.00 42.13 93.62 100.02 53.01 80.13 13.58 30.01 46.59 19.66 24.60 59.73 73.59 77.14 45.27 73.63 38.05 23.57 45.58 20 I2 Intron 0 12.71 13.20 12.54 10.77 10.10 4.82 10.29 12.13 6.95 8.41 2.07 5.93 9.15 1.08 4.88 10.16 5.94 5.73 6.15 9.71 2.00 0.81 1.96 21 I2_SR1 SilentIntronRegion 0 12.71 13.20 12.54 10.77 10.10 4.82 10.29 12.13 6.95 8.41 2.07 5.93 9.15 1.08 4.88 10.16 5.94 5.73 6.15 9.71 2.00 0.81 1.96 22 ER3a ExonRegion 0 1.41 2.71 1.23 2.27 1.78 0.61 0.88 2.30 0.82 3.06 6.44 2.89 4.69 2.17 1.93 1.98 7.70 1.85 1.06 5.67 1.47 0.69 0.98 23 ER3b ExonRegion 0 6.66 10.41 4.36 13.29 12.43 2.43 8.94 9.84 5.98 8.32 30.87 9.55 17.10 14.40 7.55 12.15 19.17 13.34 2.11 15.64 4.86 3.40 9.03 24 E3a_E4a KnownJunction 0 3.78 15.79 7.89 21.58 7.64 0.00 10.73 8.79 6.71 6.42 16.90 12.15 33.44 22.37 9.27 12.56 34.78 19.90 0.00 13.29 3.15 5.45 7.51 25 ER4a ExonRegion 1 11.14 33.65 14.15 30.24 8.27 13.55 19.29 30.42 35.47 34.90 96.69 40.11 85.02 41.16 40.22 49.96 62.14 53.28 26.45 48.07 34.52 22.60 16.66 26 E4a_E5a KnownJunction 1 3.19 50.45 8.96 23.14 4.24 44.52 33.65 6.49 32.84 24.71 14.11 70.67 51.78 14.72 4.45 34.95 36.09 37.27 17.32 35.41 18.35 6.25 20.06 27 ER5a ExonRegion 0 3.13 34.57 12.15 21.91 7.19 23.38 26.07 17.72 36.67 29.26 29.96 29.81 35.76 11.71 8.67 26.44 43.15 22.77 3.32 46.56 37.46 13.74 13.21 28 E5a_E6a KnownJunction 0 0.00 39.73 10.85 23.84 12.82 16.41 11.04 21.15 46.35 32.45 31.80 18.76 27.27 13.19 8.90 31.79 58.25 29.10 0.00 60.40 30.95 14.08 24.50 29 ER6a ExonRegion 0 9.20 50.89 19.04 22.56 10.30 17.58 29.10 32.03 43.19 30.43 44.86 50.46 53.53 19.08 10.40 24.80 45.42 45.51 13.51 58.89 37.67 24.02 19.24 30 E6a_E7a KnownJunction 1 26.45 65.98 35.07 26.54 23.34 2.90 25.35 30.44 45.14 27.78 35.38 105.93 121.75 19.07 6.30 38.37 65.45 58.78 4.52 83.80 53.00 12.43 32.95 31 ER7a ExonRegion 0 20.10 92.52 23.67 24.48 14.08 24.71 35.73 26.56 52.65 33.82 45.45 54.01 65.09 20.77 11.22 30.08 44.98 39.06 12.55 83.45 31.03 21.95 21.86 32 E7a_E8a KnownJunction 0 18.60 88.47 20.43 22.47 11.71 31.63 65.63 23.41 57.20 23.75 44.80 95.43 56.98 21.25 0.00 31.53 36.19 23.55 14.02 73.82 16.68 15.80 29.11 33 ER8a ExonRegion 0 15.82 78.41 25.66 24.80 21.68 24.50 45.18 19.69 56.45 29.06 33.26 66.86 81.86 20.80 10.53 23.84 38.59 24.00 16.09 89.47 9.79 22.19 16.50 34 E8a_E9a KnownJunction 0 34.38 109.32 12.65 21.88 28.95 67.01 61.78 8.67 75.20 33.34 45.80 80.13 99.18 17.54 4.45 36.49 28.24 38.14 31.72 97.22 10.87 26.82 19.97 35 ER9a ExonRegion 0 15.05 73.91 17.66 27.08 12.57 41.25 30.05 18.47 43.23 39.35 39.01 81.04 80.16 25.46 13.42 34.52 40.31 37.37 29.76 89.19 32.03 20.90 20.94 36 E9a_E10a KnownJunction 0 9.85 88.14 16.00 32.93 8.57 23.11 43.90 11.87 38.05 26.84 42.64 74.87 67.20 24.55 23.61 21.36 21.13 37.39 38.50 93.45 21.62 17.15 4.35 37 ER10a ExonRegion 1 15.95 77.34 20.58 36.78 17.37 21.57 41.13 28.51 50.32 47.50 55.01 85.97 82.31 41.65 11.97 61.05 53.25 96.10 31.85 98.09 52.30 30.22 31.23 38 E10a_E11b KnownJunction 0 6.67 66.24 17.33 18.08 16.98 14.82 46.33 16.84 57.78 40.96 63.91 79.83 71.10 21.84 14.09 35.72 62.83 62.43 48.38 86.99 58.75 8.76 31.24 39 E11_Aa NovelBoundary 0 13.63 8.02 3.46 14.32 0.00 0.00 2.21 2.05 6.42 6.69 2.53 0.00 6.17 0.00 4.82 0.00 4.58 0.00 0.00 0.00 2.90 0.00 0.00 40 ER11a ExonRegion 0 15.57 16.66 6.00 8.22 4.62 1.06 11.58 9.03 4.78 6.84 1.79 2.11 2.52 0.23 3.91 5.38 5.67 2.14 1.71 5.03 1.71 1.88 2.74 41 E11_Ab KnownBoundary 0 18.15 24.67 3.25 18.15 0.00 0.00 13.29 5.50 5.96 5.37 2.68 0.00 0.00 0.00 0.00 0.00 4.77 2.36 0.00 2.56 5.93 0.00 0.00 42 ER11b ExonRegion 0 38.58 83.64 26.98 31.60 18.41 40.80 37.40 28.77 55.92 53.46 55.73 52.00 75.32 37.93 13.13 57.41 74.52 94.60 34.82 65.79 62.45 25.21 37.97 43 E11_Da NovelBoundary 0 17.41 9.80 11.06 26.10 8.23 16.30 36.83 19.63 13.34 6.26 0.00 0.00 6.82 0.00 0.00 0.00 9.26 10.65 28.71 11.51 3.15 3.12 0.00 44 E11a_E12a KnownJunction 0 63.34 116.76 49.85 44.02 11.04 50.08 35.55 47.40 105.06 85.50 101.18 65.27 54.70 51.92 13.35 117.92 84.99 182.06 68.24 111.60 99.46 65.09 57.53 45 I11 Intron 0 5.12 4.92 9.57 22.93 5.39 1.11 7.47 8.83 5.94 5.86 4.29 6.37 3.89 1.89 0.41 4.19 7.98 4.08 7.06 5.15 2.22 0.84 4.14 46 I11_SR1 SilentIntronRegion 0 5.16 4.96 9.65 23.10 5.43 1.12 7.53 8.90 5.98 5.90 4.32 6.42 3.92 1.91 0.42 4.23 8.05 4.11 7.12 5.19 2.23 0.85 4.18 47 E12_Aa NovelBoundary 0 95.72 63.41 24.93 58.83 27.76 27.88 54.59 28.42 17.10 15.55 2.00 12.60 6.17 0.00 14.71 11.71 8.32 7.54 12.80 2.75 11.24 3.12 7.94 48 ER12a ExonRegion 0 34.24 65.99 23.57 31.32 19.12 29.86 39.54 32.87 52.96 53.14 49.38 60.91 43.87 40.99 26.37 70.43 54.69 81.72 48.94 65.92 72.59 32.56 47.36 49 E12a_E13a KnownJunction 0 8.89 32.56 9.52 17.85 14.01 14.71 21.51 14.75 30.90 22.32 16.06 41.71 13.64 17.36 13.35 27.86 38.80 32.62 17.79 37.14 30.58 20.08 29.71 50 E13_Aa NovelBoundary 0 0.00 14.60 3.99 8.52 0.00 2.90 1.81 11.13 3.47 3.87 2.68 0.00 0.00 0.00 0.00 4.19 16.92 1.95 8.28 0.00 3.15 0.00 4.35 51 ER13a ExonRegion 0 7.21 29.81 18.72 19.10 7.62 13.63 24.54 16.04 25.69 32.78 32.54 39.84 42.86 27.55 12.30 34.88 42.37 43.78 36.21 33.18 40.67 15.09 24.42 52 E13a_E14a KnownJunction 0 6.74 26.51 30.99 27.10 16.38 19.14 27.20 15.57 25.58 44.56 22.64 73.82 19.32 31.31 13.35 26.75 39.93 40.54 32.19 33.49 38.30 21.49 33.04 53 ER14a ExonRegion 0 19.39 37.98 28.27 30.22 30.57 34.73 36.08 16.93 36.91 38.10 42.86 32.66 40.35 39.93 19.71 36.02 45.19 50.13 31.15 53.00 42.88 22.43 29.67 54 E14_Ab KnownBoundary 0 52.23 55.58 21.35 35.29 51.27 45.54 36.26 19.14 32.46 38.68 41.01 14.55 25.49 34.79 9.77 33.41 26.83 49.95 36.05 55.61 41.39 14.14 29.11 55 E14_Da NovelBoundary 0 16.08 12.04 3.22 7.86 0.00 26.92 17.14 4.07 7.90 4.86 15.11 12.90 12.82 9.18 4.45 7.43 32.16 7.30 3.67 29.08 13.28 7.78 15.45 56 ER14b ExonRegion 0 41.10 51.52 20.22 34.30 40.58 50.74 37.84 15.70 40.45 36.80 53.32 27.06 34.39 37.22 15.47 34.67 52.26 50.20 25.48 74.65 44.81 23.27 34.02 57 E14b_E15a KnownJunction 0 18.23 49.99 16.79 32.50 33.11 27.14 32.68 12.03 32.35 31.32 30.22 38.56 13.31 19.01 8.90 16.41 48.15 41.04 13.46 52.80 25.14 31.05 12.04 58 ER14c ExonRegion 0 24.66 44.84 15.07 32.03 29.70 37.96 30.19 13.40 38.04 30.85 39.72 41.78 33.06 25.26 11.46 24.22 52.32 49.15 12.74 53.62 32.39 23.75 27.60 59 ER15a ExonRegion 0 15.72 57.16 24.03 25.80 14.72 34.13 34.46 9.13 29.85 27.74 46.30 31.47 33.63 18.44 8.39 21.71 40.74 47.30 28.01 31.81 25.15 12.20 12.00 60 E15a_E16b KnownJunction 0 7.56 38.74 27.94 28.27 12.39 35.83 31.49 15.81 35.36 31.72 32.85 24.46 34.09 19.60 9.64 21.28 41.05 40.96 13.93 32.53 42.44 8.45 14.43 61 ER16a ExonRegion 0 3.17 20.34 11.64 10.22 1.34 14.67 12.58 6.05 16.67 16.06 19.33 10.82 16.42 12.18 4.35 10.40 19.81 21.25 12.74 17.02 17.63 5.21 5.87 62 ER16b ExonRegion 0 9.67 25.25 17.29 20.71 9.48 21.70 28.13 14.81 41.26 30.95 25.45 23.09 32.37 18.81 21.07 21.26 36.81 32.77 16.06 40.81 19.99 13.20 18.60 63 E16_Da NovelBoundary 0 13.04 2.96 2.69 5.33 3.74 0.00 0.00 0.00 2.95 0.00 7.58 25.06 0.00 5.53 0.00 3.25 7.67 1.74 0.00 11.89 0.00 0.00 7.85 64 E16a_E17a KnownJunction 0 0.00 2.50 3.55 1.30 7.47 0.00 8.08 4.11 10.10 1.40 8.05 0.00 0.00 4.94 0.00 7.52 0.00 0.00 4.14 5.75 2.78 0.00 0.00 65 E16a_E18a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.89 0.00 2.47 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 2.72 0.00 0.00 66 E16a_E19a KnownJunction 0 10.59 18.55 12.03 19.58 11.88 18.11 14.04 10.39 26.01 23.67 25.90 37.36 34.74 12.66 13.35 13.84 51.71 45.10 12.71 26.27 8.46 5.57 23.90 67 E16a_E19b KnownJunction 0 0.00 0.00 1.24 1.40 0.00 2.67 0.00 0.00 1.30 3.33 0.00 6.00 0.00 0.00 0.00 0.00 0.00 0.00 3.67 0.00 2.53 0.00 0.00 68 E17_Aa NovelBoundary 0 2.89 18.35 4.73 10.62 0.00 0.00 3.89 3.94 4.98 7.92 5.16 0.00 21.43 7.42 6.30 3.76 0.00 2.57 9.32 2.43 2.72 0.00 0.00 69 ER17a ExonRegion 0 4.47 15.33 5.04 10.16 4.23 3.92 9.89 3.70 6.66 6.69 5.69 11.23 14.76 9.22 2.43 10.56 10.41 10.19 6.91 9.83 10.09 4.37 2.09 70 E17_Da NovelBoundary 0 10.15 2.63 3.08 11.59 0.00 0.00 8.13 2.55 5.93 2.74 0.00 12.30 6.82 2.47 0.00 16.58 0.00 3.56 3.95 0.00 3.15 0.00 0.00 71 E17a_E19a KnownJunction 0 0.00 10.06 3.67 9.52 7.89 0.00 4.28 0.00 3.01 3.12 2.68 0.00 0.00 4.94 0.00 3.59 0.00 7.05 4.14 5.43 11.98 5.27 0.00 72 E18_Aa NovelBoundary 0 3.78 6.05 9.73 18.48 16.81 4.66 13.16 7.43 17.33 15.39 2.63 0.00 0.00 2.41 0.00 18.97 9.16 11.48 0.00 5.88 3.15 0.00 12.80 73 ER18a ExonRegion 1 13.78 9.15 0.00 4.04 5.35 11.90 16.56 3.00 1.90 2.69 11.64 15.62 51.18 17.66 27.68 21.30 19.93 3.80 14.33 13.79 9.38 5.13 14.65 74 E18_Da NovelBoundary 0 0.00 9.21 3.13 2.73 8.06 0.00 12.54 8.42 3.76 2.36 0.00 0.00 0.00 7.30 5.19 0.00 8.23 14.09 0.00 9.46 3.15 0.00 0.00 75 E18a_E19a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.35 0.00 1.05 2.68 7.50 0.00 2.47 0.00 3.76 0.00 3.77 0.00 0.00 2.53 0.00 0.00 76 ER19a ExonRegion 0 8.24 37.34 23.59 24.40 7.67 20.39 26.77 20.55 36.79 35.93 51.05 44.23 44.02 26.38 11.74 43.11 40.96 59.51 39.84 44.07 29.05 14.71 16.81 77 E19_Ab KnownBoundary 0 9.93 33.22 39.35 20.08 12.65 29.36 49.15 22.80 58.22 34.87 46.43 53.72 35.22 36.38 15.58 41.78 60.59 70.93 41.79 51.65 43.12 18.80 10.59 78 ER19b ExonRegion 0 10.68 50.41 32.87 34.12 31.26 36.60 34.99 22.68 54.58 34.77 55.61 55.81 60.97 29.63 16.93 54.58 60.25 56.41 41.30 59.81 30.39 15.18 15.33 79 E19a_E20a KnownJunction 0 17.78 45.78 9.43 30.60 11.71 24.25 30.03 26.90 54.46 19.56 32.53 48.62 25.16 22.31 14.09 8.12 37.96 32.13 32.38 46.15 16.87 11.08 15.71 80 ER20a ExonRegion 0 25.00 61.31 30.89 29.82 21.51 34.77 46.29 28.20 62.40 38.22 48.00 41.92 41.61 28.67 10.43 48.29 62.72 51.22 45.60 61.13 29.59 20.30 22.10 81 E20_Da KnownBoundary 0 0.00 2.50 3.37 0.00 0.00 5.34 6.23 4.85 2.75 9.21 0.00 0.00 0.00 0.00 4.57 3.50 8.23 1.95 13.84 0.00 0.00 0.00 0.00 82 E20a_E21a KnownJunction 0 13.41 35.98 28.89 34.03 19.69 43.33 34.54 22.02 54.05 33.87 51.22 42.91 26.62 25.43 4.45 51.70 61.06 36.44 26.64 68.20 11.86 23.82 4.35 83 ER20b ExonRegion 0 0.00 5.05 0.97 5.79 2.17 6.00 10.33 4.27 1.34 4.13 0.00 1.44 4.47 0.54 2.62 3.84 0.68 0.98 4.75 2.58 0.00 0.00 1.19 84 E20_Db NovelBoundary 0 2.89 8.68 1.83 5.33 8.15 0.00 18.37 4.35 6.16 5.88 0.00 7.05 20.29 0.00 4.45 0.00 3.55 3.94 4.42 3.13 2.29 0.00 4.35 85 I20_AR3 ActiveIntronRegion 0 15.65 12.31 6.19 7.19 6.73 5.92 18.26 5.09 4.49 4.60 3.01 8.71 7.10 5.32 5.46 6.14 3.64 3.27 3.99 6.98 3.04 1.16 4.05 86 E21_Aa NovelBoundary 0 6.59 14.21 4.29 16.31 25.21 0.00 4.02 10.80 10.59 7.41 0.00 0.00 6.82 2.12 0.00 4.36 4.02 0.00 4.24 3.00 0.00 0.00 0.00 87 ER21a ExonRegion 0 9.41 45.34 25.30 23.67 16.68 20.56 27.07 16.19 50.13 30.98 39.59 38.35 50.27 19.78 10.99 37.80 51.30 23.22 18.44 55.99 25.23 16.94 13.85 88 E21_Da KnownBoundary 0 19.78 50.39 25.10 28.17 33.02 38.95 30.16 18.03 65.48 44.62 31.22 61.67 46.75 13.13 0.00 24.69 59.28 16.37 27.39 37.90 25.64 13.29 11.69 89 ER21b ExonRegion 0 7.21 48.15 16.20 35.97 34.16 23.93 31.02 26.37 55.73 42.65 32.53 56.12 35.90 12.11 6.77 22.75 43.20 18.82 18.64 52.74 26.74 16.10 8.59 90 E21_Db KnownBoundary 0 7.56 59.20 6.21 31.13 42.44 22.43 40.01 20.70 51.65 29.01 27.22 100.53 26.62 12.24 18.54 32.56 30.95 23.34 12.33 40.72 21.81 25.17 3.24 91 ER21c ExonRegion 1 5.49 42.81 15.37 32.85 25.03 22.93 34.81 21.71 43.27 37.39 14.44 58.35 39.23 12.68 8.45 18.14 17.32 12.48 16.24 32.92 6.48 21.01 11.17 92 E21_Dc KnownBoundary 1 15.11 50.12 17.18 53.41 37.27 18.23 45.36 16.68 66.64 33.85 14.79 106.68 91.88 21.31 4.45 24.69 22.44 0.00 17.88 51.13 4.88 26.21 18.78 93 ER21d ExonRegion 0 33.54 93.41 36.20 52.34 50.58 52.51 48.09 47.63 65.10 54.01 21.50 41.47 36.74 17.64 17.31 26.52 23.08 29.67 28.70 46.74 16.56 22.91 19.11