Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 EGFL7 Gene 0 100.26 3.71 110.20 65.33 24.82 11.79 8.38 52.82 50.57 31.33 0.76 0.00 0.29 2.40 1.26 0.28 0.49 1.92 9.43 6.42 14.12 40.25 39.22 2 371699 Transcript 0 2.23 0.00 0.94 0.00 0.09 0.00 0.22 0.34 0.12 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 3 308874 Transcript 0 5.29 0.17 9.64 1.99 2.45 0.46 2.14 5.38 3.63 3.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.07 0.98 4 406555 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 492862 Transcript 0 3.16 0.00 3.81 1.39 0.63 1.26 1.42 2.17 1.42 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 0.00 6 490469 Transcript 0 0.00 0.00 46.04 9.12 0.00 0.00 2.16 1.97 9.58 2.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.00 0.00 7 492002 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.59 8 371698 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 472752 Transcript 0 16.24 0.00 10.43 14.15 8.58 2.56 2.58 8.63 3.07 12.86 0.00 0.00 0.00 0.00 0.57 0.00 0.00 0.00 1.33 0.00 0.00 0.87 2.46 10 ER1a ExonRegion 0 4.46 0.00 0.06 0.00 0.18 0.00 0.44 0.69 0.25 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 11 E1a_E4a KnownJunction 0 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER2a ExonRegion 0 10.58 0.34 9.19 0.45 4.91 0.92 2.21 3.17 3.71 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 1.96 13 ER2b ExonRegion 0 44.45 4.07 33.09 5.45 24.08 11.92 9.93 12.10 14.20 5.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.13 2.94 14 ER2c ExonRegion 0 63.50 4.07 37.99 9.54 29.43 14.67 10.59 13.83 17.29 6.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.25 2.94 15 ER2d ExonRegion 0 70.73 2.29 60.05 18.89 9.33 7.76 5.36 16.74 26.81 9.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.54 2.45 16 E2a_E3a KnownJunction 0 0.00 0.00 1.71 2.06 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 E2a_E4a KnownJunction 0 36.90 0.00 96.27 36.53 8.23 0.00 0.00 33.31 44.39 14.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.72 0.00 18 E2a_E4b KnownJunction 0 0.00 0.00 10.08 3.53 0.00 0.00 2.08 7.60 3.56 4.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.06 0.00 19 ER3a ExonRegion 0 9.49 0.00 9.71 2.11 1.90 1.61 2.00 3.09 2.71 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 20 E3a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.16 2.25 3.41 0.00 2.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 ER4a ExonRegion 0 23.28 0.00 102.01 24.87 5.35 0.92 0.66 24.20 40.14 15.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.38 2.94 22 ER4b ExonRegion 0 33.56 1.15 144.46 45.61 12.37 3.32 3.88 42.40 57.10 22.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.21 2.64 23 E4_Da NovelBoundary 0 13.71 0.00 32.70 1.60 0.00 5.79 2.08 7.48 17.77 1.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 E4a_E6a KnownJunction 0 34.60 0.00 119.39 90.00 7.39 7.55 0.00 51.88 51.21 9.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.08 4.27 25 E4a_E7a KnownJunction 0 0.00 0.00 46.04 9.12 0.00 0.00 2.16 1.97 9.58 2.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.00 0.00 26 ER5a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.59 27 ER5b ExonRegion 0 3.13 0.49 0.69 0.33 1.50 0.81 0.11 0.28 0.99 0.00 0.31 0.00 0.00 0.13 0.00 0.00 0.00 1.92 2.29 0.94 4.94 3.42 36.53 28 I5 Intron 0 22.70 0.21 27.24 4.82 2.94 1.97 2.03 9.67 11.85 5.11 0.05 0.18 0.10 0.19 0.00 0.00 0.00 0.47 0.57 0.16 0.17 3.19 1.95 29 I5_AR1 ActiveIntronRegion 0 35.64 0.00 40.61 8.64 4.67 2.15 3.22 13.61 12.45 6.58 0.00 0.00 0.61 0.21 0.00 0.00 0.00 0.75 0.51 0.00 0.00 3.56 1.72 30 I5_SR2 SilentIntronRegion 0 51.39 0.00 47.02 8.84 7.98 3.54 1.54 12.60 20.90 5.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 0.91 3.25 31 I5_AR2 ActiveIntronRegion 0 21.17 0.00 41.66 9.77 0.00 0.00 2.65 5.19 18.94 5.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.12 0.00 0.00 0.00 2.94 32 I5_SR3 SilentIntronRegion 0 35.77 0.23 39.83 8.29 3.23 2.52 2.23 11.48 16.25 5.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.09 0.00 0.20 5.00 3.34 33 I5_AR3 ActiveIntronRegion 0 21.62 0.00 17.04 3.83 0.74 0.00 3.68 3.77 5.70 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 1.45 34 E6_Aa NovelBoundary 0 94.24 3.03 39.15 8.56 12.22 0.00 2.25 19.84 4.37 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 3.00 0.00 35 ER6a ExonRegion 0 58.63 2.03 143.93 79.75 14.68 16.01 6.30 46.90 55.01 17.64 1.93 0.00 0.00 1.62 0.00 2.17 0.00 10.59 41.07 9.89 29.60 56.37 209.77 36 E6_Da KnownBoundary 0 103.65 2.57 206.14 112.24 31.24 24.59 14.75 56.23 83.65 33.42 2.16 0.00 0.00 0.00 0.00 4.36 0.00 11.69 76.61 19.18 45.28 88.73 296.30 37 ER6b ExonRegion 0 46.26 3.16 148.73 55.54 16.53 18.79 9.97 42.34 61.81 28.54 0.30 0.00 0.00 0.06 0.00 0.84 0.00 6.24 16.56 3.43 11.69 30.47 45.36 38 E6_Db NovelBoundary 0 6.52 0.00 25.16 7.23 0.00 2.90 2.21 16.76 6.31 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 E6b_E7a KnownJunction 0 34.90 3.35 119.13 41.22 11.29 10.16 5.70 62.43 67.36 22.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 8.47 2.81 7.72 18.55 7.68 40 ER7a ExonRegion 0 117.24 7.13 228.83 94.73 27.15 21.22 13.35 87.96 94.10 39.84 3.57 0.00 0.00 1.29 0.00 0.00 0.00 1.88 19.41 17.97 30.42 60.80 89.96 41 E7a_E8a KnownJunction 0 160.70 5.85 239.73 109.41 39.30 14.76 8.30 99.77 85.85 31.62 5.16 0.00 0.00 0.00 0.00 0.00 0.00 3.52 41.41 20.84 24.09 79.79 125.57 42 E7a_E9a NovelJunction 0 3.11 3.35 17.36 0.00 0.00 0.00 0.00 5.79 14.18 3.87 0.00 0.00 0.00 2.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 ER8a ExonRegion 0 101.01 6.10 197.00 70.79 30.44 17.54 10.42 68.91 57.50 19.35 1.04 0.00 3.47 0.40 1.39 0.00 4.88 1.12 11.36 12.37 24.30 38.95 49.92 44 E8_Da KnownBoundary 0 105.94 21.84 210.34 93.19 32.85 26.29 13.96 112.91 80.35 29.20 0.00 0.00 0.00 2.47 0.00 0.00 0.00 4.23 13.37 14.70 29.16 53.09 65.05 45 ER8b ExonRegion 0 91.82 10.86 136.36 60.52 22.20 11.98 7.72 69.17 61.83 20.79 1.93 0.00 0.00 0.86 4.44 0.00 0.00 3.15 9.76 12.81 28.79 65.08 57.05 46 E8_Db NovelBoundary 0 3.78 0.00 42.10 11.62 3.82 0.00 2.25 11.46 13.60 10.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.11 47 E8b_E9a KnownJunction 0 164.99 6.71 135.68 71.99 23.09 5.05 9.01 54.42 77.78 26.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.45 9.51 15.08 21.37 75.62 82.20 48 I8 Intron 0 10.12 0.54 28.13 7.55 2.13 0.97 1.41 6.84 4.40 6.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.57 0.00 4.43 1.56 49 I8_AR1 ActiveIntronRegion 0 11.05 0.37 31.11 8.22 2.22 1.09 1.58 7.57 4.93 7.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.63 0.00 4.86 1.75 50 E9_Aa NovelBoundary 0 9.63 0.00 33.97 9.59 0.00 2.61 0.00 14.21 11.86 5.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.21 7.77 51 ER9a ExonRegion 0 176.40 3.83 167.30 75.11 38.07 8.08 10.76 69.62 72.77 32.15 3.14 0.00 0.00 3.65 1.12 0.00 1.75 2.85 10.15 13.48 24.42 61.44 70.27 52 E9a_E10a KnownJunction 0 199.00 6.25 232.34 124.53 52.97 12.89 11.70 101.99 102.89 40.45 2.68 0.00 0.00 4.47 4.45 0.00 0.00 2.49 8.19 2.49 42.50 69.19 97.06 53 ER10a ExonRegion 0 97.78 3.35 181.55 101.42 29.15 19.66 13.62 84.56 89.90 38.66 2.18 0.00 0.00 7.37 0.79 0.00 0.00 4.05 16.60 17.02 33.84 74.42 75.59 54 E10a_E11a KnownJunction 0 156.32 11.97 266.13 138.14 52.04 12.72 24.60 132.71 107.44 40.75 2.68 0.00 0.00 4.89 0.00 0.00 0.00 5.55 27.11 15.02 54.18 63.93 161.51 55 E10a_E13a NovelJunction 0 0.00 0.00 15.11 0.00 0.00 0.00 0.00 3.90 1.50 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56 I10 Intron 0 147.75 1.97 18.42 27.57 24.39 16.00 12.07 7.99 6.78 14.58 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.41 0.00 7.27 10.82 57 I10_AR1 ActiveIntronRegion 0 148.20 1.96 18.53 27.70 24.45 16.08 12.12 8.04 6.82 14.67 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 0.00 0.41 0.00 7.31 10.85 58 E11_Aa NovelBoundary 0 71.79 0.00 32.67 81.28 11.63 10.62 0.00 47.93 24.68 30.52 0.00 0.00 0.00 0.00 4.45 0.00 0.00 0.00 0.00 3.26 0.00 2.69 16.22 59 ER11a ExonRegion 0 190.84 16.49 253.69 171.01 58.41 38.11 19.31 132.08 125.05 71.64 2.08 0.00 0.00 9.22 6.03 0.00 0.00 10.83 32.83 17.84 63.20 137.58 144.03 60 E11_Da NovelBoundary 0 9.78 0.00 3.19 3.33 33.87 23.68 1.68 0.00 2.37 9.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.36 0.00 2.88 0.00 61 E11a_E12a NovelJunction 0 55.49 3.29 24.87 32.53 3.74 7.72 12.32 11.34 9.87 13.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 62 E11a_E13a KnownJunction 0 225.23 8.68 334.14 259.07 60.95 42.70 29.81 177.97 141.09 106.05 0.00 0.00 0.00 15.54 0.00 0.00 0.00 13.56 55.25 20.13 58.69 184.86 157.24 63 ER12a ExonRegion 0 32.48 0.00 20.86 28.30 17.15 5.11 5.17 17.26 6.14 25.72 0.00 0.00 0.00 0.00 1.14 0.00 0.00 0.00 2.66 0.00 0.00 1.74 4.91 64 E12_Da NovelBoundary 0 45.86 5.92 30.99 21.28 16.89 8.40 15.50 18.32 10.19 29.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.84 16.99 65 E12a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66 I12 Intron 0 99.24 1.47 24.50 28.96 20.70 8.64 12.31 18.37 10.45 24.15 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.38 0.00 0.27 8.31 5.68 67 I12_AR1 ActiveIntronRegion 0 99.70 1.48 24.61 29.09 20.79 8.68 12.37 18.45 10.50 24.27 0.00 0.00 0.00 0.00 1.28 0.00 0.00 0.00 0.38 0.00 0.27 8.35 5.71 68 E13_Aa NovelBoundary 0 138.39 0.00 55.20 64.99 31.32 11.30 12.50 39.51 16.09 38.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.78 0.00 8.71 69 ER13a ExonRegion 0 206.14 13.04 350.24 216.86 56.70 58.03 25.97 183.98 149.14 91.55 1.51 0.00 0.00 9.48 2.69 0.00 0.00 7.06 45.81 22.65 42.94 154.61 91.81 70 E13_Da KnownBoundary 0 296.87 22.30 442.27 248.19 71.39 64.28 47.03 222.87 185.33 103.39 0.00 0.00 0.00 4.59 4.45 0.00 0.00 13.47 34.17 26.59 47.07 130.79 127.11 71 ER13b ExonRegion 0 470.20 11.41 354.83 243.55 93.14 45.71 35.27 212.62 166.16 116.55 0.00 0.00 0.84 6.00 4.37 0.00 0.59 10.87 23.10 16.26 49.71 127.80 119.60 72 E13b_E14a KnownJunction 0 642.34 12.23 468.73 361.69 122.84 22.32 34.18 198.47 185.15 136.70 2.26 0.00 6.82 2.12 4.45 0.00 4.49 8.58 38.02 29.98 42.32 161.78 208.46 73 E14_Aa NovelBoundary 0 36.23 0.00 4.94 3.53 20.37 10.85 1.77 6.74 1.33 8.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.62 0.00 12.06 3.67 74 ER14a ExonRegion 0 271.21 8.63 211.23 160.83 68.13 19.53 15.87 116.07 110.38 86.35 1.19 0.00 1.17 6.72 4.12 1.46 1.90 1.66 18.69 12.19 24.82 95.97 74.03 75 ER14b ExonRegion 0 21.17 0.00 4.90 0.00 8.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00