Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FAM102A Gene 0 126.03 25.63 39.13 31.58 68.55 34.25 35.66 69.01 63.95 37.62 51.06 46.03 47.31 60.21 40.70 61.45 44.73 55.34 31.17 37.17 167.47 67.71 68.95 2 464641 Transcript 0 5.54 1.55 0.00 0.00 0.00 1.22 1.20 0.00 0.94 0.93 1.56 0.00 8.93 4.02 3.59 3.96 3.14 0.18 1.52 0.41 18.05 1.69 0.00 3 373095 Transcript 1 53.78 7.25 6.55 5.02 33.45 6.87 12.94 14.23 11.12 2.91 2.74 13.49 10.68 6.67 3.49 4.90 1.11 3.46 9.40 4.29 2.96 9.62 8.53 4 494606 Transcript 0 3.11 0.09 0.01 0.00 2.07 0.00 1.40 1.71 0.00 0.00 0.01 0.00 0.00 0.06 0.73 1.15 2.48 0.00 0.00 2.42 0.02 0.00 0.00 5 493175 Transcript 0 16.87 7.75 4.66 7.33 22.09 5.09 11.50 8.33 12.62 4.75 2.53 7.00 2.97 3.49 2.29 7.95 3.93 6.49 3.06 6.44 6.84 9.56 6.12 6 479828 Transcript 0 0.26 0.00 0.26 0.00 0.00 1.38 0.11 0.00 0.62 0.00 0.00 3.25 0.00 0.81 0.00 3.34 2.06 0.46 0.27 0.00 0.00 0.00 0.49 7 300434 Transcript 0 0.00 0.00 0.00 0.00 0.00 2.78 0.00 2.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.71 0.00 0.00 0.00 0.00 8 373084 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 465821 Transcript 0 21.05 5.99 10.01 4.85 15.52 8.15 8.60 15.95 15.71 8.77 1.55 1.82 1.44 1.52 1.07 2.54 1.79 15.23 6.62 13.17 4.78 1.27 3.26 10 IG8_AR1 ActiveIntergenicRegion 0 0.00 0.63 1.41 0.00 1.22 4.64 1.21 5.07 3.66 4.58 6.96 0.55 1.19 6.16 1.89 10.25 5.44 10.72 5.91 1.59 29.07 1.92 16.68 11 ER1a ExonRegion 0 5.54 1.55 0.00 0.00 0.00 1.22 1.20 0.00 0.94 0.93 1.56 0.00 8.93 4.02 3.59 3.96 3.14 0.18 1.52 0.41 18.05 1.69 0.00 12 ER1b ExonRegion 0 21.29 3.64 2.33 1.26 7.98 10.30 7.61 1.00 5.72 3.51 14.09 2.00 12.45 18.18 9.99 7.72 12.89 5.58 14.27 5.32 53.95 11.22 7.74 13 E1_Ac KnownBoundary 0 31.12 6.71 5.29 3.86 24.87 10.79 16.69 5.83 13.83 5.56 20.01 6.00 13.64 18.60 13.35 3.42 8.04 12.23 4.42 5.56 88.84 23.45 11.78 14 ER1c ExonRegion 0 45.86 11.13 13.74 10.86 38.77 17.63 27.43 40.60 45.46 20.44 49.88 39.25 33.82 65.97 31.69 55.10 56.04 32.36 21.74 28.27 183.47 58.06 62.22 15 E1_Ad KnownBoundary 1 159.81 34.73 45.77 30.50 117.23 44.86 66.11 94.55 104.28 60.01 95.08 139.40 54.70 104.66 59.83 63.66 144.65 51.19 56.57 64.81 318.77 116.89 112.68 16 ER1d ExonRegion 0 70.34 23.15 37.43 21.89 66.96 22.56 35.73 77.90 76.43 39.33 82.67 114.68 101.33 88.61 47.16 83.39 87.44 46.54 40.56 42.06 275.05 117.94 94.08 17 E1_Da NovelBoundary 0 6.96 0.00 4.82 3.46 0.00 0.00 2.25 5.59 8.19 2.69 0.00 0.00 0.00 2.35 0.00 0.00 0.00 3.52 17.51 14.96 0.00 0.00 0.00 18 E1a_E2a KnownJunction 0 3.78 0.00 0.00 0.00 0.00 0.00 0.00 1.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 E1a_E4a KnownJunction 0 79.20 21.77 33.44 15.28 79.63 26.46 37.10 65.68 75.66 32.02 85.44 106.83 90.42 97.53 49.69 88.95 67.41 58.20 30.59 50.05 325.32 131.16 101.58 20 E1a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.25 4.31 8.07 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 2.97 13.90 0.00 21 I1_AR4 ActiveIntronRegion 0 16.20 1.80 2.95 3.64 0.00 0.00 4.35 2.53 5.11 2.05 0.00 1.83 0.00 0.00 0.22 8.69 6.98 15.24 9.56 7.49 8.60 2.76 1.41 22 ER2a ExonRegion 0 2.44 0.18 0.02 0.00 4.14 0.00 2.81 1.73 0.00 0.00 0.03 0.00 0.00 0.12 1.45 2.30 4.95 0.00 0.00 4.84 0.03 0.00 0.00 23 E2_Da NovelBoundary 0 14.22 0.00 1.48 2.00 0.00 2.78 10.16 2.22 4.60 5.40 0.00 0.00 0.00 2.35 0.00 0.00 3.93 17.99 3.95 18.41 5.19 2.82 4.27 24 I2_SR3 SilentIntronRegion 0 15.98 3.41 7.38 2.47 20.23 3.23 6.53 6.88 4.47 4.77 1.88 14.08 2.68 0.60 3.40 2.89 6.41 11.15 9.28 10.23 5.25 2.02 5.43 25 I2_SR4 SilentIntronRegion 0 28.07 4.14 9.53 3.98 12.40 3.97 11.73 14.27 8.04 3.36 2.23 3.05 2.11 0.80 2.19 5.51 2.45 9.24 10.40 14.39 5.93 0.90 4.85 26 I2_AR4 ActiveIntronRegion 0 26.30 1.62 3.88 2.96 11.73 2.58 9.25 9.02 7.88 3.00 0.42 3.35 1.34 0.78 1.23 2.79 3.10 10.67 4.58 9.51 4.99 0.33 4.27 27 I2_SR5 SilentIntronRegion 0 26.64 4.00 6.03 4.47 8.31 1.73 8.33 9.42 6.95 3.36 2.66 3.17 1.82 1.55 1.72 3.39 3.24 11.41 9.77 9.70 7.02 0.49 5.08 28 ER3a ExonRegion 0 0.26 0.00 0.26 0.00 0.00 1.38 0.11 0.00 0.62 0.00 0.00 3.25 0.00 0.81 0.00 3.34 2.06 0.46 0.27 0.00 0.00 0.00 0.49 29 I3 Intron 0 30.91 4.08 5.66 4.20 8.26 2.61 10.66 11.58 7.71 4.34 2.11 5.30 3.52 1.97 2.51 3.68 4.49 14.28 7.74 13.00 7.60 1.37 4.50 30 I3_SR1 SilentIntronRegion 0 30.93 4.08 5.66 4.20 8.26 2.61 10.67 11.59 7.72 4.34 2.11 5.30 3.53 1.97 2.51 3.69 4.49 14.29 7.74 13.01 7.61 1.37 4.50 31 E4_Aa NovelBoundary 0 24.97 2.57 0.00 6.03 21.05 2.90 14.09 12.90 5.90 7.17 0.00 5.85 0.00 0.00 0.00 7.43 12.25 25.29 4.61 14.57 8.28 0.00 0.00 32 ER4a ExonRegion 1 75.83 15.68 32.22 27.04 75.08 23.98 41.28 88.57 90.86 44.10 87.99 148.74 130.08 127.39 73.47 142.32 103.50 104.22 48.91 55.83 344.18 149.24 154.94 33 E4_Da NovelBoundary 0 6.96 0.00 2.84 6.79 11.46 0.00 9.94 7.52 8.85 11.55 2.00 0.00 0.00 4.71 0.00 8.29 0.00 21.14 0.00 17.19 8.59 0.00 8.71 34 E4a_E5a KnownJunction 0 76.68 12.17 28.86 37.59 67.91 51.79 33.48 58.37 76.62 40.37 114.13 113.89 102.75 112.78 79.12 77.67 76.67 48.21 44.90 41.42 293.75 133.73 117.55 35 I4 Intron 0 29.68 2.59 2.33 0.52 5.46 2.34 7.43 5.91 4.22 6.10 0.99 2.01 0.00 4.53 4.18 5.31 2.53 18.26 3.25 9.22 5.61 0.53 4.49 36 I4_SR1 SilentIntronRegion 0 28.86 2.17 2.80 0.68 7.14 2.88 7.33 6.74 4.91 7.61 1.29 2.15 0.00 5.53 3.94 5.63 2.74 20.16 3.69 9.89 7.09 0.25 5.87 37 I4_AR1 ActiveIntronRegion 0 33.82 4.07 0.82 0.00 0.00 0.61 8.09 3.34 2.09 1.25 0.00 1.64 0.00 1.34 5.16 4.43 1.91 12.61 1.91 7.38 0.83 1.53 0.00 38 E5_Aa NovelBoundary 0 29.12 8.88 9.64 7.66 19.35 10.68 20.76 7.64 6.37 5.91 2.00 0.00 0.00 0.00 15.20 7.78 8.13 8.21 0.00 15.79 5.25 0.00 4.35 39 E5b_E6b KnownJunction 0 87.13 15.26 37.31 27.74 102.89 55.71 42.84 79.81 100.43 47.79 138.14 65.12 152.59 134.97 87.52 100.74 141.65 46.05 58.26 45.13 412.49 91.42 72.56 40 ER5a ExonRegion 0 82.43 13.33 39.82 37.10 66.15 49.41 35.08 80.95 100.04 48.30 139.92 85.15 117.51 131.64 61.41 99.07 91.32 58.51 55.21 40.43 376.96 140.98 108.49 41 ER5b ExonRegion 0 95.77 23.89 42.68 34.75 92.76 64.03 45.57 86.28 105.81 61.07 153.02 101.74 139.53 132.77 73.01 90.65 113.33 66.37 47.52 46.10 428.44 114.94 84.43 42 ER5c ExonRegion 0 33.74 15.50 9.31 14.66 44.18 10.18 20.74 12.34 17.17 9.50 5.07 13.99 5.93 4.51 4.58 15.89 7.86 12.97 6.12 12.87 10.72 5.22 12.24 43 E5_Dc NovelBoundary 0 68.09 32.69 11.59 9.89 60.53 23.62 49.20 29.00 9.29 11.90 11.32 6.30 0.00 4.83 0.00 3.50 4.11 13.56 16.57 10.55 5.87 6.00 0.00 44 I5 Intron 0 53.76 10.16 9.91 15.25 15.36 9.73 15.10 26.84 20.92 12.57 5.70 10.44 7.09 5.68 3.72 8.41 8.57 31.35 12.78 21.92 17.41 5.08 9.82 45 I5_SR1 SilentIntronRegion 0 62.05 15.54 2.33 8.60 39.78 11.69 28.67 17.49 16.42 4.36 5.70 13.64 6.92 3.21 2.97 8.84 1.40 7.04 9.48 15.37 3.75 2.66 2.50 46 I5_SR2 SilentIntronRegion 0 53.10 9.64 10.72 15.98 12.91 9.57 13.76 27.89 21.45 13.45 5.71 10.14 7.14 5.95 3.81 8.40 9.33 33.94 13.16 22.66 18.87 5.34 10.60 47 E6_Aa NovelBoundary 0 18.23 9.80 16.20 15.25 16.21 7.38 16.25 38.20 23.21 11.50 14.95 13.95 0.00 4.77 0.00 3.25 8.23 30.84 3.48 35.86 14.70 0.00 3.16 48 ER6a ExonRegion 0 21.36 4.48 11.00 7.93 12.83 10.93 7.93 20.01 17.77 12.23 5.91 11.36 6.04 5.78 3.04 6.28 10.87 27.94 9.47 14.82 15.17 7.46 7.95 49 E6_Ab KnownBoundary 0 46.67 6.58 9.49 10.55 11.63 5.34 4.50 23.82 19.65 18.05 6.79 19.96 6.82 7.00 5.93 4.36 17.39 30.14 4.61 23.78 14.15 4.84 4.27 50 ER6b ExonRegion 0 86.14 32.47 50.66 42.74 69.41 46.34 48.08 117.33 114.80 59.98 123.21 149.37 132.33 110.24 79.68 116.04 84.32 109.11 53.85 57.02 354.34 119.25 127.85 51 E6_Da NovelBoundary 0 30.97 12.89 16.47 10.12 16.47 5.45 17.62 12.98 16.03 8.97 5.00 6.30 0.00 0.00 0.00 0.00 0.00 30.14 16.38 8.05 13.71 2.39 3.84 52 E6a_E7a KnownJunction 0 112.54 14.87 40.92 37.49 92.53 77.40 47.56 135.05 127.26 50.20 107.97 154.25 115.25 128.08 87.40 187.22 78.35 111.68 75.58 57.72 376.04 148.61 211.87 53 E6a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.78 0.00 2.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.71 0.00 0.00 0.00 0.00 54 I6 Intron 0 12.00 8.50 10.27 10.64 8.62 5.02 7.70 11.27 9.38 7.73 2.69 2.93 1.87 1.95 1.71 2.29 3.33 19.52 7.81 12.58 12.71 3.20 5.65 55 I6_AR1 ActiveIntronRegion 0 11.07 6.64 9.55 8.41 9.91 6.00 6.93 10.67 9.63 5.96 3.37 4.66 4.09 2.33 0.97 1.94 2.88 20.81 7.64 7.88 13.44 4.54 3.84 56 I6_SR1 SilentIntronRegion 0 12.30 9.05 10.50 11.30 8.27 4.76 7.94 11.46 9.33 8.25 2.51 2.44 1.24 1.85 1.92 2.39 3.47 19.19 7.88 13.94 12.53 2.83 6.17 57 E7_Aa NovelBoundary 0 21.34 15.46 12.42 14.35 7.81 8.40 21.90 34.54 21.04 9.03 2.63 0.00 0.00 2.47 0.00 0.00 0.00 28.31 4.42 8.76 18.78 2.33 0.00 58 ER7a ExonRegion 0 276.99 28.60 53.39 38.48 109.59 64.61 53.49 112.75 150.34 70.18 141.51 172.53 214.14 150.08 101.61 255.60 130.28 123.80 69.40 81.76 469.16 163.67 247.37 59 E7_Da NovelBoundary 0 0.00 5.92 15.23 22.27 16.13 15.67 18.46 29.20 32.35 11.79 0.00 0.00 0.00 0.00 4.45 3.50 0.00 30.14 7.72 14.32 8.77 0.00 4.27 60 E7a_E8a KnownJunction 1 115.65 26.71 53.75 29.67 64.94 51.39 31.89 71.35 143.69 75.46 96.23 116.59 184.73 105.66 70.96 112.79 60.21 80.09 35.86 63.28 359.42 119.28 172.18 61 I7 Intron 0 4.56 6.57 5.25 7.29 2.88 3.29 5.23 12.95 9.25 6.75 2.78 3.93 1.39 2.50 2.33 3.20 2.37 28.73 8.01 6.11 3.17 2.24 1.05 62 I7_SR1 SilentIntronRegion 0 4.61 6.67 5.32 7.40 2.92 3.34 5.31 13.14 9.38 6.85 2.82 3.99 1.41 2.53 2.34 3.25 2.40 29.14 8.10 6.20 3.21 2.28 1.07 63 E8_Aa NovelBoundary 0 14.82 15.72 12.98 26.00 7.47 32.82 8.21 27.93 21.90 11.63 0.00 6.30 0.00 0.00 5.19 0.00 0.00 37.35 12.99 8.44 5.13 0.00 3.59 64 ER8a ExonRegion 1 79.49 18.45 43.84 38.26 62.24 38.24 37.71 96.22 132.43 72.00 106.45 95.41 188.82 115.73 81.56 105.90 60.15 93.69 60.64 55.16 352.27 127.25 134.43 65 ER8b ExonRegion 1 43.76 14.03 41.51 49.88 62.41 34.43 33.33 109.11 117.83 58.32 97.85 93.52 183.38 116.73 80.65 96.37 61.64 119.46 58.61 44.31 311.88 96.36 98.08 66 E8_Ab KnownBoundary 0 91.57 26.11 63.27 69.19 78.44 56.33 24.07 119.98 125.64 61.22 90.76 102.33 139.93 105.25 97.16 133.81 73.40 163.41 30.31 49.54 279.91 91.36 117.97 67 ER8c ExonRegion 0 89.88 15.92 50.76 45.21 42.23 43.28 24.49 94.73 127.78 80.95 98.95 129.83 106.38 107.45 71.54 129.52 69.69 153.76 34.71 56.96 331.56 110.52 151.64 68 E8_Db NovelBoundary 1 8.96 10.06 10.53 6.99 4.33 2.90 0.00 15.32 4.40 5.64 0.00 24.76 0.00 5.24 4.45 0.00 0.00 16.58 19.01 0.00 11.92 0.00 13.06 69 E8b_E9a KnownJunction 0 249.38 11.91 55.62 50.21 62.22 52.24 47.17 96.11 147.89 89.58 128.24 106.53 106.81 143.03 60.70 183.63 75.18 130.99 32.19 83.09 426.94 100.61 199.24 70 E9_Aa NovelBoundary 0 42.53 3.35 13.57 17.71 7.72 5.22 10.73 17.00 9.14 7.87 15.37 6.30 0.00 0.00 0.00 4.19 3.74 18.57 3.95 9.01 2.78 0.00 0.00 71 ER9a ExonRegion 0 128.02 16.23 48.12 31.98 51.86 46.72 35.29 66.14 83.86 56.48 90.20 75.99 107.25 96.95 51.45 77.11 64.73 77.38 42.26 46.87 282.03 69.95 102.78 72 E9a_E10a KnownJunction 0 200.33 21.18 47.37 31.00 56.96 58.83 34.54 98.70 110.21 58.64 95.66 48.17 72.40 139.80 58.10 113.56 62.09 101.85 16.57 43.02 319.02 42.56 88.35 73 ER10a ExonRegion 0 107.59 19.86 36.21 22.16 37.34 35.17 30.36 57.16 68.53 45.19 65.86 37.24 70.35 96.39 48.09 66.30 55.88 56.44 23.18 40.45 223.44 63.88 68.61 74 E10_Da NovelBoundary 0 20.60 0.00 9.20 5.23 0.00 0.00 15.32 21.52 11.55 6.58 2.53 0.00 0.00 7.42 0.00 0.00 13.74 18.94 3.76 0.00 11.98 0.00 0.00 75 E10a_E11a KnownJunction 0 88.76 16.25 46.33 31.43 111.38 64.85 79.76 83.63 98.84 52.22 68.33 61.07 67.85 138.33 67.25 114.93 74.99 67.69 49.22 46.34 291.47 82.73 93.73 76 ER11a ExonRegion 0 58.57 15.49 51.63 36.56 82.99 56.62 52.10 90.52 109.71 66.54 82.04 69.27 62.55 125.43 65.49 113.06 73.13 100.38 44.80 57.99 328.14 110.84 113.93 77 E11_Da NovelBoundary 0 3.56 0.00 9.91 6.63 37.86 0.00 9.54 6.49 14.21 7.23 5.11 12.15 0.00 4.77 0.00 7.43 0.00 6.51 0.00 3.13 16.06 3.12 4.10 78 E11a_E12a KnownJunction 1 63.86 27.69 47.04 47.45 67.49 27.26 27.60 126.14 142.27 66.24 90.87 80.88 129.05 129.38 100.25 194.48 60.96 131.03 66.45 49.86 383.02 175.01 242.00 79 E12_Aa NovelBoundary 0 24.23 8.81 6.95 15.62 3.40 7.72 6.54 27.15 25.06 6.85 9.27 0.00 6.82 11.60 0.00 0.00 4.11 19.94 13.65 8.76 13.90 6.00 0.00 80 ER12a ExonRegion 0 74.14 21.70 56.87 63.00 29.85 24.31 31.47 135.81 142.20 67.67 111.58 143.61 113.57 126.47 99.60 162.02 76.82 107.93 70.44 73.22 407.18 213.05 183.58 81 E12_Da KnownBoundary 0 17.78 6.31 3.34 0.00 4.33 0.00 8.39 1.68 9.98 1.53 2.26 0.00 0.00 2.47 0.00 0.00 0.00 13.56 4.80 11.38 2.72 0.00 0.00 82 E12a_E12b KnownJunction 0 109.57 30.06 82.73 76.55 45.67 30.78 23.49 166.64 153.27 87.65 172.25 168.96 158.76 179.76 92.09 190.21 113.60 114.29 89.70 93.51 405.51 224.11 159.89 83 ER12b ExonRegion 0 21.05 5.99 10.01 4.85 15.52 8.15 8.60 15.95 15.71 8.77 1.55 1.82 1.44 1.52 1.07 2.54 1.79 15.23 6.62 13.17 4.78 1.27 3.26 84 E12_Ab KnownBoundary 0 30.30 16.12 18.45 9.42 16.47 7.33 9.10 39.97 28.36 17.46 4.32 0.00 0.00 0.00 11.25 3.16 0.00 23.46 0.00 51.26 2.84 5.51 10.67 85 ER12c ExonRegion 0 210.19 42.18 70.20 54.85 110.54 65.75 60.85 133.30 111.70 68.43 94.04 81.12 88.50 108.36 76.67 111.85 84.08 102.78 61.11 62.68 304.62 119.75 129.44 86 E12_Ac KnownBoundary 0 190.48 52.23 41.25 43.68 105.01 59.91 66.95 91.72 60.53 37.20 38.11 6.30 19.48 66.22 29.92 46.40 52.36 26.90 44.33 40.08 156.91 69.44 57.88 87 ER12d ExonRegion 0 325.14 60.88 72.19 65.57 149.22 51.14 61.11 93.78 77.74 48.98 55.33 28.45 22.07 65.35 54.26 68.42 42.90 51.42 32.22 47.40 172.85 99.86 73.96 88 E12_Db KnownBoundary 0 71.86 5.72 1.51 4.96 33.45 6.76 12.10 25.47 12.21 2.01 2.47 6.30 0.00 2.18 5.07 11.54 0.00 5.10 0.00 5.88 2.29 4.90 8.11 89 E12_Dc KnownBoundary 0 41.49 0.00 4.88 4.83 4.16 8.52 4.50 4.97 3.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.82 7.94 90 ER12e ExonRegion 0 107.94 22.37 8.58 10.22 57.53 11.00 23.17 35.43 18.53 5.73 2.90 8.66 9.38 7.31 5.80 11.89 0.00 5.54 3.19 6.38 6.61 20.84 11.75 91 ER12f ExonRegion 1 53.78 7.25 6.55 5.02 33.45 6.87 12.94 14.23 11.12 2.91 2.74 13.49 10.68 6.67 3.49 4.90 1.11 3.46 9.40 4.29 2.96 9.62 8.53