Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PMPCA Gene 0 47.29 73.23 91.87 38.04 33.69 40.93 37.60 55.63 53.58 81.04 143.85 44.06 33.08 141.99 176.93 123.20 92.68 75.97 59.44 60.66 95.68 47.53 59.81 2 446975 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 371720 Transcript 0 6.15 0.00 0.00 1.60 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 0.00 2.27 0.00 4 399219 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 371717 Transcript 1 76.45 132.56 191.51 80.52 76.29 109.13 72.70 105.70 93.39 161.56 320.99 82.32 41.84 318.52 415.50 214.96 177.37 117.58 109.11 126.66 234.19 78.79 85.03 6 462616 Transcript 0 26.93 27.46 28.07 14.51 17.37 14.26 16.65 23.98 21.15 25.66 27.74 16.42 15.19 28.62 27.83 33.78 20.93 23.89 22.06 19.30 17.16 15.06 27.15 7 444897 Transcript 0 16.21 16.43 25.61 6.64 5.09 5.97 6.28 12.96 10.70 13.76 18.53 3.41 5.95 15.11 21.90 16.49 18.91 20.19 17.24 14.13 23.71 12.22 10.13 8 ER1a ExonRegion 0 0.00 2.71 0.00 2.27 1.78 0.61 3.53 0.00 1.24 1.15 0.00 0.00 0.00 0.54 5.80 5.94 4.40 0.00 0.00 0.71 0.00 5.56 4.89 9 ER1b ExonRegion 1 101.78 207.43 74.07 22.32 43.12 76.18 95.41 32.32 39.55 63.89 93.81 10.69 6.06 158.05 282.08 98.87 135.84 7.16 58.67 96.18 114.76 67.81 72.86 10 E1a_E2a KnownJunction 0 109.13 181.28 151.33 45.02 50.42 69.22 66.16 48.18 68.20 121.31 136.51 33.01 35.06 62.10 114.22 101.26 129.13 47.17 99.58 92.10 99.65 28.04 70.08 11 ER2a ExonRegion 0 36.79 110.65 162.30 68.03 45.83 38.55 36.13 93.94 106.46 158.44 345.20 120.52 82.55 316.49 341.35 303.16 248.61 118.56 192.77 136.73 204.72 105.52 154.22 12 E2a_E3a KnownJunction 0 50.38 193.12 270.42 121.60 256.62 118.40 94.11 128.11 144.59 232.11 407.05 245.33 131.81 260.82 311.39 410.58 266.67 205.65 179.30 194.24 128.62 129.63 135.81 13 ER3a ExonRegion 0 54.39 260.09 247.92 97.02 212.25 246.49 206.94 143.44 135.74 234.27 487.55 224.70 137.12 367.52 334.80 288.00 279.92 164.47 155.61 167.39 203.54 154.57 108.22 14 E3a_E4a KnownJunction 0 88.09 525.56 265.01 127.72 74.62 193.47 182.52 178.92 137.73 251.51 563.41 319.15 135.71 329.63 368.13 241.39 328.19 148.24 110.87 158.13 218.32 120.57 76.57 15 ER4a ExonRegion 0 171.21 383.00 236.11 113.05 55.93 107.05 100.88 142.84 125.64 245.67 517.67 318.66 139.29 376.58 434.17 355.22 323.93 210.38 128.14 189.85 227.35 142.18 136.25 16 E4a_E5a KnownJunction 0 165.07 268.50 174.54 83.71 65.96 72.46 49.55 145.81 120.05 226.93 471.22 226.12 92.36 411.15 455.28 396.39 204.39 198.02 164.24 148.22 248.22 161.04 146.14 17 E4a_E6b KnownJunction 0 6.15 0.00 0.00 1.60 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 0.00 2.27 0.00 18 E5_Aa NovelBoundary 0 3.63 5.39 8.13 1.66 0.00 0.00 0.00 6.94 2.78 1.32 13.00 0.00 0.00 4.94 8.90 12.48 0.00 3.98 29.84 0.00 5.13 3.12 0.00 19 ER5a ExonRegion 0 126.21 199.35 167.44 66.67 54.22 57.89 51.82 132.20 102.42 184.91 417.16 178.01 95.78 360.69 384.19 258.11 237.53 128.14 124.33 137.11 272.96 143.26 101.08 20 E5a_E6b KnownJunction 0 156.40 314.94 155.88 64.96 72.84 68.77 79.98 90.86 94.39 162.78 451.96 209.92 156.48 409.15 338.09 266.77 225.43 141.60 86.12 119.27 242.97 90.14 88.95 21 ER6a ExonRegion 0 2.85 3.38 3.86 0.73 2.28 2.07 3.58 5.01 2.19 6.30 8.26 3.12 4.25 6.01 11.91 9.84 10.52 3.29 8.32 4.45 5.15 4.86 2.73 22 E6_Ab KnownBoundary 0 3.56 0.00 2.90 0.00 4.16 0.00 0.00 2.14 3.39 4.16 7.53 0.00 6.82 14.54 8.90 18.46 8.42 6.59 0.00 9.01 5.81 5.63 4.35 23 ER6b ExonRegion 0 94.40 172.08 170.47 74.58 39.47 85.55 68.33 120.96 100.92 173.10 340.36 125.08 95.63 348.70 350.82 265.65 224.79 162.68 122.92 125.91 237.96 112.86 112.86 24 E6_Da KnownBoundary 0 135.51 108.86 48.99 16.05 44.31 69.45 51.67 59.27 35.71 38.82 65.60 37.66 6.66 69.75 119.41 101.08 49.28 60.31 110.69 27.80 95.75 85.97 87.67 25 E6a_E6c KnownJunction 0 48.75 134.45 134.83 40.09 60.61 26.52 50.96 62.97 78.47 140.00 367.83 85.08 87.98 367.18 287.53 251.81 186.91 158.19 98.54 102.40 217.52 100.12 93.30 26 ER6c ExonRegion 0 44.84 56.48 39.91 14.77 37.01 43.20 32.46 47.42 33.09 36.54 50.80 16.00 23.62 69.42 56.67 83.98 38.07 44.46 60.86 27.54 59.75 41.17 61.04 27 E6_Db KnownBoundary 0 84.31 69.59 33.77 14.22 82.68 50.43 47.83 26.62 22.11 38.57 41.96 18.46 6.82 64.10 33.01 81.86 39.64 34.07 41.41 30.10 35.03 24.98 55.06 28 E6_Dc KnownBoundary 0 62.68 64.86 48.14 9.39 29.29 25.78 17.22 23.54 32.29 32.64 53.33 13.35 26.62 52.56 73.55 37.17 43.76 16.33 28.05 33.49 46.95 26.33 48.06 29 ER6d ExonRegion 0 63.40 71.09 49.17 14.28 50.26 35.16 32.70 30.66 35.71 49.02 57.23 17.51 20.19 63.69 59.92 71.07 45.93 34.22 42.66 35.99 51.16 28.99 51.20 30 ER6e ExonRegion 0 64.79 63.86 58.22 24.17 39.46 30.64 29.37 43.10 36.02 46.83 64.62 34.89 24.52 63.87 49.36 66.26 36.56 40.31 38.74 33.24 34.55 32.33 59.27 31 E6_Ac KnownBoundary 0 45.86 43.22 70.34 15.05 45.67 32.99 18.11 20.09 36.54 51.87 45.91 18.91 34.09 66.40 48.95 31.27 38.80 30.68 17.51 40.65 49.55 25.11 45.50 32 ER6f ExonRegion 0 92.28 137.76 189.08 54.50 53.83 73.13 63.52 88.94 92.26 158.33 318.28 70.64 62.53 344.43 347.85 263.28 206.54 177.92 106.49 117.26 214.78 95.33 126.35 33 E6_Dd NovelBoundary 0 21.93 30.85 7.54 3.43 3.65 9.94 5.39 8.54 5.32 9.94 4.79 0.00 13.64 12.24 14.46 8.72 0.00 16.79 4.42 8.82 6.24 6.25 3.76 34 E6d_E7a KnownJunction 1 166.70 174.31 216.70 66.19 90.15 121.24 74.46 125.89 101.24 153.76 343.56 36.76 32.63 375.95 371.10 395.62 216.27 280.60 83.58 124.26 160.37 114.08 160.06 35 ER6g ExonRegion 1 113.87 128.62 190.42 54.58 67.56 110.67 65.67 109.76 91.58 145.08 344.15 12.99 39.87 362.10 337.71 326.93 240.47 239.93 94.13 123.62 193.38 85.11 138.46 36 I6 Intron 0 3.99 6.57 4.18 1.64 6.48 2.96 4.28 7.97 5.45 9.66 5.20 3.98 4.71 7.56 12.22 8.00 7.11 9.15 15.43 8.30 7.11 7.85 11.86 37 I6_SR1 SilentIntronRegion 0 3.87 6.13 4.08 2.48 3.26 2.61 4.57 9.94 5.23 10.77 5.89 4.40 1.46 8.48 10.82 8.45 7.38 13.81 14.87 9.06 7.60 7.60 16.10 38 E7_Aa NovelBoundary 0 27.26 2.96 32.23 5.29 3.40 16.24 17.58 21.85 17.01 15.47 19.58 12.60 19.64 16.48 24.11 27.00 12.53 30.34 9.60 5.75 7.85 5.82 11.27 39 ER7a ExonRegion 1 92.99 141.17 181.78 58.16 68.65 93.72 73.09 88.54 102.47 158.26 358.58 55.35 33.23 395.59 458.96 377.20 221.76 258.35 147.79 110.87 200.51 105.41 153.84 40 E7a_E8a KnownJunction 1 100.09 189.11 208.83 55.30 57.22 82.28 95.08 80.83 103.30 173.10 373.94 40.96 20.45 380.31 516.84 308.30 299.58 190.85 78.97 111.92 259.28 101.28 85.19 41 ER8a ExonRegion 0 81.98 124.22 208.92 64.95 52.55 71.87 68.46 110.03 106.93 148.43 396.50 78.95 53.52 368.18 392.74 287.32 223.38 197.59 100.86 119.97 240.74 87.82 114.31 42 E8a_E9a KnownJunction 0 160.18 204.24 322.49 101.39 47.79 87.28 106.39 145.36 140.71 203.37 532.45 80.28 73.53 368.95 411.77 391.09 289.20 250.71 254.50 202.30 264.78 143.41 177.81 43 ER9a ExonRegion 0 132.99 151.71 258.96 95.39 94.97 117.67 72.64 125.57 119.62 180.88 394.18 63.85 53.70 357.15 494.04 324.45 242.82 177.55 149.50 178.44 252.80 114.36 136.89 44 E9a_E10a KnownJunction 1 104.91 157.01 212.26 112.51 109.25 207.49 113.41 148.93 137.12 193.24 387.31 97.08 35.55 462.95 543.79 268.13 152.31 178.04 112.19 180.25 266.88 107.46 155.36 45 ER10a ExonRegion 0 135.39 161.98 257.68 107.39 106.10 126.33 103.23 133.72 128.67 207.21 499.61 119.64 58.96 472.64 572.97 347.41 255.16 202.14 146.32 181.93 295.30 136.22 162.03 46 E10_Da KnownBoundary 0 2.82 0.00 12.57 11.82 0.00 2.90 0.00 7.93 5.84 12.68 2.68 0.00 0.00 2.47 0.00 7.95 17.67 11.23 16.85 12.53 5.50 3.00 16.56 47 E10a_E11a KnownJunction 0 195.29 175.69 343.34 122.40 76.57 85.80 89.78 110.20 127.20 197.27 431.37 121.39 100.32 374.77 733.92 392.12 292.47 220.61 203.58 172.70 313.09 130.79 161.34 48 ER10b ExonRegion 0 13.16 15.15 22.12 18.62 10.37 10.08 17.00 23.84 25.24 23.86 10.33 11.27 16.79 15.98 22.21 25.23 15.70 28.08 19.10 20.22 11.78 7.98 19.45 49 E10_Db NovelBoundary 0 31.26 17.83 9.08 12.45 15.96 24.64 47.56 10.31 10.82 10.69 7.05 7.65 12.66 2.35 19.28 11.54 21.97 8.42 18.45 16.36 2.41 6.06 8.02 50 E11_Aa NovelBoundary 0 9.85 17.17 1.57 7.29 4.16 0.00 8.13 4.44 7.78 19.58 9.16 7.50 0.00 11.89 4.45 15.98 8.32 8.17 0.00 31.77 11.24 3.12 8.54 51 ER11a ExonRegion 0 98.02 179.46 227.40 86.72 73.74 107.68 92.90 97.70 113.68 168.58 375.96 101.04 54.99 320.52 470.52 273.42 218.11 185.03 120.45 135.61 277.97 114.51 105.84 52 E11_Da KnownBoundary 0 15.41 29.40 13.13 10.22 11.88 5.79 10.11 15.69 9.87 15.82 17.06 11.85 0.00 17.36 24.72 20.08 17.77 28.93 0.00 19.69 23.10 10.35 4.35 53 E11a_E12a KnownJunction 0 81.79 164.77 203.22 93.79 101.02 152.19 95.21 114.47 99.48 165.34 397.21 118.09 46.26 372.77 410.16 224.30 213.65 123.45 133.46 164.40 286.52 83.95 80.67 54 ER11b ExonRegion 0 10.90 17.44 18.12 10.84 5.17 4.50 6.30 12.64 12.40 13.63 18.51 0.55 0.00 13.79 18.65 25.67 12.96 19.97 7.11 13.48 13.34 12.66 7.39 55 E11_Db KnownBoundary 0 13.85 20.79 40.33 5.53 0.00 2.73 3.75 22.63 17.39 15.69 16.64 6.00 0.00 31.79 30.16 22.73 25.62 24.95 16.00 21.16 19.46 5.57 12.63 56 ER11c ExonRegion 0 16.21 16.43 25.61 6.64 5.09 5.97 6.28 12.96 10.70 13.76 18.53 3.41 5.95 15.11 21.90 16.49 18.91 20.19 17.24 14.13 23.71 12.22 10.13 57 E11_Dc NovelBoundary 0 21.78 30.92 9.37 11.99 11.54 5.28 7.60 24.85 19.97 15.77 23.16 6.15 7.14 16.95 0.00 32.73 30.76 20.56 17.41 15.72 38.55 21.13 10.76 58 I11 Intron 0 22.77 22.21 26.40 9.01 7.92 8.60 10.44 16.29 11.05 13.92 24.13 3.70 7.57 20.08 22.39 38.07 16.27 22.64 22.24 9.62 21.91 16.26 15.69 59 I11_AR1 ActiveIntronRegion 1 17.85 24.38 28.56 8.02 9.05 10.04 10.12 13.70 11.82 13.30 29.38 4.07 6.94 22.96 25.60 40.90 12.43 29.05 28.70 9.21 20.07 16.60 20.35 60 I11_SR1 SilentIntronRegion 0 34.33 17.43 30.25 14.14 11.20 10.04 13.19 24.44 13.26 17.39 24.35 4.44 7.57 21.56 22.45 45.62 21.95 23.40 24.87 9.97 28.69 20.27 14.89 61 I11_AR2 ActiveIntronRegion 0 23.35 22.07 21.86 7.72 4.82 6.07 9.51 15.56 9.01 13.04 17.44 2.87 8.44 15.77 18.38 30.83 18.44 14.15 12.71 10.07 20.97 13.89 10.21 62 E12_Aa NovelBoundary 0 19.41 15.79 32.94 10.42 20.46 17.66 21.77 19.02 3.39 16.47 20.74 0.00 0.00 22.25 26.70 12.90 20.66 16.08 8.47 17.71 8.40 8.51 8.19 63 ER12a ExonRegion 0 71.12 100.35 179.80 67.25 51.56 66.07 50.18 96.92 87.31 157.79 244.78 46.56 37.41 264.27 420.83 205.61 141.09 111.71 84.76 88.92 181.86 73.63 89.39 64 IG26_AR1 ActiveIntergenicRegion 0 0.46 3.52 9.52 7.00 4.18 3.15 1.97 17.96 9.26 16.44 1.50 0.74 0.67 2.88 6.30 6.39 1.75 17.76 8.32 6.70 0.68 2.18 3.21 65 IG26_AR2 ActiveIntergenicRegion 0 3.57 6.73 13.29 10.93 5.83 6.76 4.18 18.71 10.48 19.91 0.17 0.00 0.00 0.43 7.80 5.88 5.94 19.63 13.94 14.85 0.00 2.13 2.35