Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 QSOX2 Gene 0 43.30 66.19 42.82 22.10 22.68 24.26 28.60 25.52 22.05 44.35 98.59 35.15 41.68 124.34 96.46 104.87 89.94 89.16 75.39 79.19 57.86 57.24 46.35 2 389471 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 358701 Transcript 0 25.91 67.99 30.40 17.79 31.38 28.07 31.67 21.73 20.43 49.38 111.10 73.34 68.05 163.97 93.75 139.17 132.84 101.38 115.54 115.76 80.53 75.23 69.64 4 455222 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 ER1a ExonRegion 0 1.67 3.24 4.20 0.46 1.56 3.29 2.77 1.32 2.87 6.96 17.88 6.06 10.19 23.71 28.87 23.31 23.43 18.99 10.99 17.25 20.76 6.79 12.76 6 E1a_E2a KnownJunction 1 3.78 42.43 14.72 11.15 4.33 19.36 0.00 13.64 17.39 29.09 71.65 36.61 126.13 73.17 85.17 78.01 81.91 107.24 73.88 61.42 25.14 23.27 28.17 7 ER2a ExonRegion 0 14.46 23.68 40.24 15.37 8.13 18.27 12.02 28.37 30.24 66.33 145.24 36.82 57.86 154.84 136.53 134.66 144.32 136.62 111.68 117.32 92.10 60.17 70.42 8 E2a_E3a KnownJunction 0 9.93 20.13 27.29 12.75 11.21 7.95 20.89 31.71 25.87 66.19 122.61 38.56 26.46 176.41 79.61 73.40 144.83 90.70 81.32 93.00 96.31 76.30 73.07 9 E2a_E4a NovelJunction 0 0.00 3.03 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.48 5.70 13.64 22.19 10.63 20.25 13.74 1.91 0.00 0.00 5.56 3.12 8.37 10 I2 Intron 0 7.11 5.58 3.07 2.87 2.13 1.68 6.21 2.58 2.88 5.29 8.66 5.71 14.01 11.55 10.82 13.32 12.94 21.22 18.87 19.45 4.22 2.76 3.46 11 I2_SR1 SilentIntronRegion 0 7.12 5.58 3.07 2.88 2.13 1.68 6.21 2.58 2.88 5.29 8.67 5.72 14.02 11.56 10.82 13.33 12.95 21.24 18.89 19.46 4.22 2.77 3.47 12 E3_Aa NovelBoundary 0 10.74 26.64 4.85 3.83 0.00 2.16 11.17 15.81 0.00 4.57 5.32 0.00 19.80 4.59 15.95 15.98 7.95 12.31 27.48 2.62 13.71 4.96 0.00 13 ER3a ExonRegion 1 18.41 26.62 20.20 15.61 13.38 10.28 24.83 26.24 30.73 77.61 137.94 55.89 73.76 210.15 93.54 75.47 173.15 81.08 102.70 93.94 93.96 56.19 51.97 14 E3_Da NovelBoundary 0 15.56 24.34 0.00 5.16 14.01 0.00 29.32 1.56 7.03 8.22 15.53 15.00 13.64 2.47 0.00 3.59 9.07 12.81 30.02 19.43 5.19 12.49 4.35 15 E3a_E4a KnownJunction 0 54.68 40.98 20.64 20.98 15.79 29.87 26.72 16.31 24.45 68.39 120.24 61.52 86.36 216.38 115.33 109.12 191.12 91.36 104.76 103.67 97.98 41.76 53.86 16 ER3b ExonRegion 0 39.29 42.20 20.37 21.55 14.05 20.06 23.75 17.61 25.78 77.77 142.19 70.90 105.23 220.17 99.55 93.06 181.76 96.20 105.32 99.73 98.20 45.06 49.01 17 ER4a ExonRegion 0 22.66 47.52 32.00 16.62 17.90 23.32 34.71 21.00 25.74 60.53 137.91 91.90 143.62 192.00 136.96 158.78 181.67 147.16 128.95 142.91 115.20 83.09 74.14 18 E4_Da NovelBoundary 1 0.00 8.75 4.94 1.33 0.00 0.00 0.00 1.97 0.00 2.58 4.21 27.76 20.29 22.07 14.59 28.20 18.42 24.87 10.73 22.50 0.00 0.00 3.59 19 E4a_E5a KnownJunction 0 27.86 39.14 28.38 12.65 45.25 33.84 57.37 28.46 16.35 66.05 131.77 113.74 114.60 156.75 115.71 178.07 216.83 100.81 131.02 131.03 92.48 101.22 97.74 20 E4a_E7a KnownJunction 0 0.00 3.03 4.17 1.83 0.00 0.00 5.79 0.00 0.00 1.56 2.26 0.00 0.00 0.00 0.00 4.36 0.00 10.99 4.52 2.56 2.78 0.00 0.00 21 E5_Aa NovelBoundary 0 28.30 11.91 6.30 7.49 7.22 2.61 20.23 4.52 1.79 6.58 12.37 0.00 33.76 26.84 13.35 23.75 16.36 37.68 26.26 30.10 14.58 2.69 10.41 22 ER5a ExonRegion 0 20.23 59.17 30.30 20.46 31.67 33.49 35.50 28.04 17.41 59.92 115.51 64.04 64.17 183.42 107.44 124.73 124.06 92.45 119.36 119.05 99.34 79.52 63.93 23 E5_Da NovelBoundary 1 17.56 5.53 4.29 3.83 3.31 2.21 11.84 4.07 5.06 2.53 4.69 31.66 33.76 27.72 13.35 12.13 21.51 23.96 25.88 8.88 5.68 8.88 7.43 24 E5a_E6a KnownJunction 0 20.30 85.45 34.95 17.25 36.16 37.36 24.82 21.32 28.79 47.38 85.28 110.89 53.73 211.61 115.09 159.19 158.86 133.98 151.44 129.56 102.74 77.22 91.94 25 I5 Intron 0 6.52 5.98 6.54 5.06 2.92 2.88 6.12 3.03 3.87 6.65 12.94 6.62 10.20 22.91 16.28 23.72 16.73 31.02 17.30 17.70 7.96 3.21 4.77 26 I5_SR1 SilentIntronRegion 0 6.53 5.99 6.55 5.06 2.93 2.88 6.13 3.03 3.87 6.66 12.95 6.63 10.22 22.94 16.29 23.75 16.75 31.05 17.32 17.72 7.97 3.21 4.78 27 E6_Aa NovelBoundary 0 6.59 6.71 22.32 10.65 0.00 7.33 13.51 0.00 4.17 0.00 11.69 12.00 6.82 24.78 28.80 35.97 20.38 47.88 25.88 20.52 8.77 3.12 4.35 28 ER6a ExonRegion 0 17.70 55.58 36.40 25.19 33.15 36.80 32.32 28.09 29.25 56.69 165.04 79.77 125.31 215.76 99.70 191.72 154.89 153.65 123.42 159.91 107.14 89.08 89.71 29 E6_Da NovelBoundary 0 6.82 9.34 0.00 2.06 0.00 10.90 6.62 0.00 6.37 1.67 15.58 12.60 6.82 21.25 9.64 30.33 8.79 34.49 20.99 25.95 0.00 6.25 11.69 30 E6a_E7a KnownJunction 0 40.45 77.42 47.25 24.14 23.77 26.92 29.85 23.33 28.33 65.87 168.99 60.77 33.28 215.73 106.19 180.29 142.40 127.39 168.00 148.99 81.48 97.42 74.52 31 I6 Intron 0 9.23 8.34 5.03 3.13 5.88 4.27 7.25 2.36 3.62 3.70 10.34 4.18 7.09 17.71 12.98 19.50 14.51 16.12 15.46 13.40 6.50 4.10 5.10 32 I6_AR1 ActiveIntronRegion 0 9.27 4.54 4.30 3.29 3.69 3.63 4.31 2.06 2.67 2.99 5.72 0.37 2.16 13.39 16.16 19.82 19.22 18.62 16.12 14.18 10.29 3.50 4.49 33 I6_SR3 SilentIntronRegion 0 10.74 11.12 6.33 3.87 7.18 5.10 9.17 2.89 4.22 4.67 12.55 5.02 9.11 18.82 13.02 20.74 14.66 17.30 18.19 14.64 6.56 4.88 5.45 34 E7_Aa NovelBoundary 0 9.11 5.92 6.24 7.23 4.24 5.05 12.41 7.06 8.16 5.96 16.95 12.00 27.11 16.72 4.45 28.03 18.05 24.04 17.22 18.54 22.18 2.33 15.88 35 ER7a ExonRegion 0 49.93 70.06 45.32 28.22 35.10 39.45 57.63 45.85 24.89 70.64 163.48 92.43 90.85 237.98 133.57 176.94 170.77 122.54 133.97 141.13 111.02 80.55 88.99 36 E7_Da NovelBoundary 0 36.82 44.73 16.03 11.32 23.09 18.34 26.67 15.77 18.89 32.45 61.07 36.91 56.33 80.17 44.01 133.55 79.66 76.77 74.54 44.36 41.21 16.96 18.95 37 E7a_E8a KnownJunction 0 30.30 79.72 35.75 23.01 16.13 29.59 37.14 17.09 11.26 54.50 91.76 44.11 54.87 146.92 89.00 83.74 110.43 163.33 110.31 110.26 77.16 97.97 50.79 38 I7 Intron 0 5.86 8.92 0.84 1.41 2.47 5.08 5.50 1.78 4.67 6.70 12.04 4.94 4.65 26.26 15.52 26.75 19.04 16.11 7.35 12.77 9.66 7.21 4.74 39 I7_SR1 SilentIntronRegion 1 8.23 7.90 2.45 4.09 5.29 4.63 0.45 3.30 4.94 6.54 21.83 3.15 9.59 28.61 17.01 31.07 27.76 18.77 9.85 14.99 11.52 6.39 2.74 40 I7_AR2 ActiveIntronRegion 0 11.32 16.98 1.59 2.86 4.01 3.48 4.30 3.11 4.20 8.95 12.85 3.46 9.61 27.85 21.47 27.05 29.54 16.63 11.15 7.55 15.43 7.19 0.00 41 I7_SR2 SilentIntronRegion 0 6.95 12.60 0.00 0.19 1.67 3.86 15.11 2.22 5.45 9.40 10.98 15.77 5.03 28.86 25.33 38.32 18.69 20.16 5.52 13.49 10.11 10.64 8.18 42 I7_AR3 ActiveIntronRegion 0 3.31 6.90 0.00 0.00 1.34 8.88 4.12 0.46 5.77 6.49 7.07 0.00 0.00 27.71 10.29 21.78 16.87 14.78 8.56 14.43 8.92 7.00 6.88 43 E8_Aa NovelBoundary 0 23.56 18.02 4.44 9.96 11.97 0.00 12.59 1.56 9.11 11.20 23.53 11.55 6.82 34.02 24.48 48.62 52.55 35.57 8.28 19.94 15.51 10.23 3.59 44 ER8a ExonRegion 0 35.56 55.69 36.90 21.51 28.12 40.96 31.73 30.59 21.80 54.73 130.96 39.76 38.78 176.43 118.84 134.32 115.68 156.15 78.58 126.28 84.45 62.73 61.76 45 E8_Da NovelBoundary 0 7.26 3.35 1.74 0.00 3.65 5.39 2.25 0.00 0.00 2.79 2.68 0.00 0.00 14.54 10.01 11.45 12.06 25.20 0.00 21.35 2.53 5.45 4.18 46 E8a_E9a KnownJunction 0 34.08 62.62 29.45 17.38 47.62 55.42 49.33 29.61 20.25 60.22 87.18 31.06 6.82 119.08 159.84 87.93 136.51 119.88 64.10 94.66 56.09 74.58 59.50 47 ER9a ExonRegion 0 32.11 60.45 48.62 19.19 30.98 42.39 39.05 25.73 26.11 53.84 139.72 24.15 25.62 178.26 144.17 140.03 110.94 123.35 102.22 101.89 75.12 96.05 68.16 48 E9a_E10a KnownJunction 0 37.86 67.75 94.11 38.89 65.87 73.03 68.28 35.04 44.99 96.19 268.17 71.42 64.77 249.34 170.10 254.72 177.19 177.05 135.44 164.20 132.70 88.36 126.08 49 ER10a ExonRegion 0 57.69 83.05 81.05 34.51 44.94 45.33 52.12 34.88 47.33 83.22 238.28 65.00 62.09 234.78 149.94 218.78 171.12 217.62 142.35 150.27 115.41 102.73 96.56 50 E10a_E11a KnownJunction 0 101.28 126.36 108.75 42.05 59.85 65.59 66.02 36.27 54.31 81.74 253.75 55.97 93.01 294.49 203.97 268.13 196.91 228.74 230.69 172.00 102.80 172.37 135.90 51 I10_AR2 ActiveIntronRegion 0 18.35 4.48 6.98 1.19 5.11 1.62 2.98 1.51 0.88 1.00 5.40 3.07 5.68 8.76 6.45 13.10 4.86 8.70 8.43 8.76 1.67 3.06 3.16 52 ER11a ExonRegion 0 56.34 91.31 69.52 33.03 35.41 49.51 50.27 22.49 35.60 59.30 169.03 55.14 57.37 223.76 132.58 172.04 137.64 171.85 113.06 136.73 100.08 96.58 82.10 53 E11_Da NovelBoundary 0 29.71 33.94 16.53 10.92 20.12 9.94 14.09 16.43 24.62 23.26 22.16 22.36 0.00 63.92 52.91 85.70 34.88 76.07 17.41 66.15 8.77 8.08 3.24 54 E11a_E12a KnownJunction 1 42.38 55.65 39.95 25.34 12.73 39.86 28.18 15.98 20.02 34.11 138.61 48.47 19.64 135.03 83.07 78.10 68.82 135.26 121.98 82.13 112.87 65.03 82.03 55 I11 Intron 0 22.99 28.21 15.20 12.01 17.14 14.45 18.68 14.49 15.37 25.13 42.65 20.77 32.68 67.38 37.01 68.20 43.74 47.99 28.33 32.60 12.17 11.99 14.08 56 I11_AR1 ActiveIntronRegion 1 21.35 27.53 13.07 10.94 20.23 12.59 20.87 13.67 15.57 22.74 36.28 7.38 12.83 76.77 41.63 73.86 44.26 49.05 24.35 37.26 15.78 9.46 11.64 57 I11_AR2 ActiveIntronRegion 0 48.32 54.45 16.63 25.88 20.37 19.78 23.32 22.18 22.74 40.81 66.06 32.39 45.27 108.86 46.33 100.64 63.57 39.05 31.33 41.53 20.61 19.22 15.09 58 I11_SR1 SilentIntronRegion 0 19.63 25.70 15.79 11.01 17.19 13.85 18.15 14.27 15.09 24.48 41.14 22.86 36.93 63.34 34.59 65.04 42.19 49.38 29.25 30.74 10.91 11.64 14.82 59 I11_AR3 ActiveIntronRegion 1 25.02 18.10 10.43 4.17 6.65 16.53 13.99 7.07 7.29 13.28 35.74 4.06 2.16 33.98 41.91 44.99 30.62 44.77 20.88 31.96 7.24 9.50 8.81 60 E12_Aa NovelBoundary 0 46.45 41.83 19.46 7.19 23.60 32.94 30.60 14.70 17.13 34.11 62.96 7.50 13.64 69.46 63.42 74.34 57.60 49.83 12.24 34.90 14.15 3.12 11.69 61 ER12a ExonRegion 0 51.47 75.48 45.49 23.75 22.23 21.53 27.37 27.03 21.27 41.08 83.47 27.98 32.34 103.91 91.95 91.46 74.53 73.25 66.34 64.69 44.98 52.59 37.59 62 ER12b ExonRegion 1 28.93 91.17 5.11 7.04 18.28 0.00 10.15 1.15 2.47 0.38 0.00 10.82 17.20 0.54 18.37 0.99 0.00 0.00 0.00 6.03 0.00 6.95 0.00