Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PKN3 Gene 0 20.92 0.89 46.64 8.47 6.55 5.29 7.02 8.99 8.48 7.13 24.53 21.33 12.57 101.71 83.94 22.59 37.16 31.58 16.32 21.19 3.13 9.32 8.66 2 291906 Transcript 0 26.21 1.26 53.27 9.99 6.40 8.02 7.87 10.67 10.03 8.52 26.77 21.11 12.21 109.64 82.50 27.63 35.94 38.42 21.61 23.01 3.65 10.36 8.41 3 483521 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 485301 Transcript 0 0.00 0.00 1.33 0.00 0.00 0.00 0.00 1.77 0.00 1.53 0.00 0.00 0.00 6.71 0.00 0.00 4.68 0.00 0.00 0.00 0.00 0.00 0.00 5 IG29_AR2 ActiveIntergenicRegion 0 0.00 5.49 3.06 5.45 0.00 0.00 2.65 1.73 0.00 5.73 0.00 0.00 0.00 6.50 11.31 0.00 3.30 0.00 9.56 10.85 0.00 0.00 2.94 6 ER1a ExonRegion 0 2.10 0.00 3.11 0.03 0.65 0.22 1.39 0.36 0.47 0.42 3.30 0.92 0.00 23.91 11.21 4.02 11.94 3.63 4.16 3.59 1.38 1.42 1.96 7 E1a_E2a KnownJunction 0 0.00 0.00 4.46 0.00 0.00 0.00 2.25 0.00 0.00 0.00 5.16 6.15 0.00 19.19 8.90 0.00 12.53 8.66 4.42 8.76 2.35 3.12 4.35 8 I1 Intron 0 2.76 0.12 10.85 1.85 1.70 1.12 2.25 3.28 2.23 2.07 4.45 5.57 2.97 28.53 17.55 8.19 8.70 9.60 4.34 6.19 0.87 2.65 4.09 9 I1_AR1 ActiveIntronRegion 0 1.20 0.00 7.36 1.28 1.10 1.03 1.36 2.26 2.10 1.11 3.68 4.29 1.19 25.47 15.77 6.68 7.49 7.53 3.61 5.17 0.79 1.92 3.75 10 I1_AR2 ActiveIntronRegion 0 3.01 0.00 15.94 3.54 2.85 1.75 3.29 5.18 3.02 3.32 3.43 4.49 2.84 30.83 21.02 9.96 12.11 13.89 4.15 8.26 1.56 4.96 6.34 11 I1_SR1 SilentIntronRegion 0 8.30 0.80 15.76 1.20 2.10 0.36 3.90 4.04 1.44 3.69 9.10 12.29 10.01 36.58 18.75 11.08 7.77 10.45 7.50 6.68 0.00 1.63 1.73 12 ER2a ExonRegion 0 8.14 0.00 19.50 1.71 3.00 1.16 2.82 5.47 2.61 2.74 10.83 4.89 0.82 70.49 44.75 6.29 18.45 18.73 9.60 11.39 1.47 3.70 5.31 13 E2a_E3a KnownJunction 0 17.48 0.00 27.56 1.30 7.47 0.00 3.53 3.98 3.01 2.85 13.90 5.40 0.00 77.82 77.26 11.19 21.32 25.08 13.65 2.88 2.84 0.00 0.00 14 ER3a ExonRegion 0 12.26 0.92 39.05 3.49 3.06 0.64 4.45 7.51 6.16 2.45 15.30 7.44 1.35 90.85 60.27 18.52 20.71 30.25 19.40 15.10 3.50 4.70 8.21 15 E3a_E4a KnownJunction 0 22.82 3.03 49.50 4.13 3.99 0.00 4.20 11.95 8.80 4.38 21.90 6.30 0.00 116.90 89.25 19.57 21.97 31.55 4.61 21.09 5.44 5.39 0.00 16 ER4a ExonRegion 0 10.73 1.58 41.24 5.67 0.53 7.40 5.30 6.45 5.12 9.26 24.21 4.52 1.80 79.87 61.08 15.21 28.41 24.04 15.36 17.63 6.00 6.18 5.32 17 E4a_E5a KnownJunction 0 7.56 0.00 48.19 6.46 0.00 16.92 6.76 15.24 7.00 7.74 10.63 6.30 0.00 99.06 96.67 30.93 26.55 40.29 31.81 23.97 2.59 0.00 0.00 18 ER5a ExonRegion 0 15.05 0.00 48.00 9.89 3.20 4.00 8.07 9.56 8.26 8.64 25.37 3.75 4.76 113.04 93.50 26.45 33.03 32.65 22.20 19.18 8.92 9.18 10.69 19 E5a_E6a KnownJunction 0 24.08 0.00 56.71 11.99 0.00 2.73 13.12 18.52 13.17 19.47 41.06 0.00 0.00 104.24 62.92 27.86 26.46 46.34 25.04 21.92 8.22 12.19 7.00 20 ER6a ExonRegion 0 19.62 1.53 49.97 11.63 1.92 7.90 11.78 13.14 13.43 10.66 35.20 17.93 12.08 119.15 90.70 30.01 35.95 45.76 17.90 25.34 4.77 8.65 6.13 21 E6a_E7a KnownJunction 1 32.15 2.76 59.28 6.66 4.33 16.47 10.29 14.17 12.64 9.59 19.16 25.51 13.64 167.58 59.46 32.38 32.63 48.75 7.72 23.84 2.29 13.29 3.93 22 ER7a ExonRegion 0 15.36 0.46 46.86 5.37 0.85 6.42 7.06 9.35 9.11 5.18 16.28 17.06 2.42 104.68 68.53 21.93 31.46 17.41 12.07 23.95 0.33 4.36 3.83 23 E7_Ab KnownBoundary 0 33.49 0.00 41.63 5.96 8.06 2.73 7.33 6.65 2.81 2.90 14.74 5.55 5.84 83.70 56.25 12.22 33.10 25.58 8.38 35.47 0.00 5.94 4.01 24 ER7b ExonRegion 0 11.24 0.00 35.37 6.18 1.68 4.75 11.02 3.63 3.25 5.51 19.95 10.96 9.96 99.99 78.44 22.09 29.83 14.33 9.16 15.87 4.16 3.63 1.45 25 E7a_E8a KnownJunction 0 29.93 0.00 43.40 9.89 11.04 2.90 13.96 4.39 5.15 9.99 21.43 11.55 28.08 126.73 79.36 26.23 39.55 33.45 18.92 20.07 0.00 3.12 0.00 26 ER8a ExonRegion 0 24.09 0.63 48.36 9.28 9.27 8.75 11.02 10.46 9.12 4.42 30.65 20.55 17.10 123.45 104.47 24.07 47.47 31.39 17.09 24.95 1.02 3.81 8.65 27 E8a_E9a KnownJunction 0 66.75 3.16 79.74 12.82 15.70 7.15 6.58 6.45 19.21 6.72 28.90 5.85 6.82 136.38 127.94 27.86 50.02 47.42 13.55 31.64 0.00 15.80 4.35 28 ER9a ExonRegion 0 21.65 0.24 45.19 10.16 5.67 8.15 5.79 9.88 8.82 5.69 30.04 24.53 12.83 115.88 112.04 32.03 50.77 39.77 15.71 24.10 2.13 9.12 8.18 29 E9a_E10a KnownJunction 0 25.41 2.76 78.38 14.28 14.52 13.06 10.55 9.94 17.01 6.58 43.43 35.11 26.46 130.97 102.73 29.99 61.06 78.89 18.26 42.06 2.78 11.70 16.30 30 ER10a ExonRegion 0 13.09 0.00 62.48 8.88 7.92 10.93 5.84 10.35 9.73 7.53 25.69 25.24 20.06 123.65 105.40 32.62 49.38 47.26 25.23 26.90 1.74 12.42 5.41 31 E10a_E11a KnownJunction 0 27.26 0.00 70.43 16.25 3.23 9.09 2.25 10.76 3.82 13.38 33.22 30.46 26.62 162.81 116.45 52.98 71.72 54.55 54.31 27.74 6.18 18.86 12.21 32 E10a_E22b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 ER11a ExonRegion 0 23.63 1.38 59.39 10.43 7.22 6.51 5.81 7.64 13.92 8.48 18.64 22.77 15.35 125.07 114.59 28.09 56.49 33.95 23.26 19.90 1.77 14.52 11.54 34 E11a_E12a KnownJunction 0 51.79 6.25 106.62 17.45 19.95 16.18 9.72 15.20 22.80 12.17 23.58 6.90 5.84 123.26 56.62 28.71 65.17 60.77 56.28 22.50 3.03 16.84 3.24 35 ER12a ExonRegion 0 52.21 1.72 70.01 11.33 14.03 14.59 16.12 11.56 14.35 10.32 27.32 21.55 33.98 150.75 109.67 44.78 30.59 28.21 56.63 19.24 5.93 27.27 17.62 36 E12_Ab KnownBoundary 0 26.97 0.00 55.29 11.09 12.73 13.40 17.05 12.53 11.17 13.67 19.00 31.21 26.13 114.31 134.50 36.40 18.42 26.74 41.51 8.76 8.53 29.09 27.32 37 ER12b ExonRegion 0 18.87 0.00 39.36 8.39 4.84 9.14 4.63 13.74 10.71 6.68 14.13 14.03 21.59 107.67 80.98 11.48 34.43 15.74 10.98 18.56 2.77 9.38 10.99 38 E12a_E13a KnownJunction 1 30.75 0.00 45.74 7.82 4.16 5.11 1.99 15.24 14.26 5.53 16.16 13.05 35.22 121.37 78.50 4.36 54.98 22.55 4.14 29.47 2.78 6.25 4.35 39 ER13a ExonRegion 0 29.72 0.00 53.12 8.88 8.97 5.83 6.00 8.34 10.83 5.72 22.57 11.52 14.00 109.27 99.11 22.73 28.01 32.55 13.54 16.21 4.60 13.63 9.46 40 E13a_E14a KnownJunction 0 38.67 0.00 48.85 10.06 8.57 0.00 4.11 10.84 9.61 6.96 24.22 22.36 6.82 96.47 56.00 24.52 23.47 30.68 20.52 21.03 2.41 12.43 15.54 41 ER14a ExonRegion 0 17.66 0.00 49.34 8.86 6.98 2.44 12.85 14.10 10.83 8.94 33.89 23.81 7.40 88.51 69.99 17.69 32.60 36.35 25.38 24.20 4.58 8.76 11.61 42 E14a_E15a KnownJunction 0 30.30 0.00 70.28 15.88 15.37 4.54 18.46 12.16 10.10 13.16 33.48 18.76 0.00 97.48 61.81 8.37 47.31 45.14 23.62 26.78 5.93 4.96 11.27 43 E14a_E16a KnownJunction 0 0.00 0.00 1.33 0.00 0.00 0.00 0.00 1.77 0.00 1.53 0.00 0.00 0.00 6.71 0.00 0.00 4.68 0.00 0.00 0.00 0.00 0.00 0.00 44 ER15a ExonRegion 0 21.88 2.03 60.32 10.86 13.58 10.23 12.89 9.00 8.38 12.05 41.26 35.67 21.61 136.57 116.81 16.15 48.76 47.26 14.47 31.91 6.66 10.64 12.96 45 E15a_E16a KnownJunction 0 32.30 6.05 58.63 15.95 3.48 16.24 12.01 14.66 16.93 12.20 42.70 24.31 25.81 112.72 145.62 19.82 20.66 50.74 21.65 23.39 5.62 10.65 7.60 46 ER16a ExonRegion 0 27.78 0.70 72.73 16.21 16.01 5.41 7.16 13.76 11.39 13.41 38.60 33.27 19.45 134.71 118.20 27.34 52.50 47.42 24.96 37.64 6.57 10.10 12.78 47 E16a_E17a KnownJunction 1 69.64 0.00 71.61 24.97 17.06 8.23 12.37 6.24 13.43 17.38 25.22 54.32 20.78 160.58 156.25 8.37 71.25 37.97 8.85 52.80 3.15 22.66 3.24 48 ER17a ExonRegion 1 58.32 0.00 81.28 13.30 26.16 7.04 17.57 8.37 10.55 16.04 27.67 65.70 16.75 147.85 128.71 31.37 53.97 34.14 28.92 31.31 3.57 18.72 19.06 49 E17a_E18a KnownJunction 1 114.17 0.00 105.02 14.85 18.42 8.46 20.31 15.77 11.98 12.01 39.96 74.12 6.82 177.88 167.25 49.82 67.98 46.80 30.49 18.79 5.19 39.50 20.40 50 ER18a ExonRegion 0 60.75 1.29 91.46 10.80 13.48 8.84 16.18 15.04 11.15 10.40 43.23 46.84 21.62 184.14 155.50 34.47 69.45 58.62 24.99 30.48 5.15 28.41 18.61 51 E18a_E19a KnownJunction 0 42.97 0.00 86.40 10.12 30.48 11.98 27.07 11.21 11.31 10.18 49.80 45.91 26.13 186.83 165.03 45.63 73.96 45.47 16.75 58.42 5.25 13.53 15.54 52 ER19a ExonRegion 0 40.98 1.73 75.85 15.75 13.55 5.95 11.99 15.62 11.12 8.71 37.28 41.54 19.94 142.26 122.66 38.14 58.59 53.89 11.83 30.00 1.49 14.37 15.44 53 E19a_E20a KnownJunction 0 51.56 3.22 76.43 17.48 8.40 13.69 12.41 19.72 18.34 10.74 39.17 38.86 33.76 124.96 148.71 65.37 48.90 105.13 23.62 40.97 0.00 21.43 27.66 54 ER20a ExonRegion 0 38.06 3.54 86.61 16.83 11.71 11.28 12.34 18.74 18.25 13.23 41.53 47.15 27.72 170.08 154.97 51.64 70.72 61.58 24.00 40.99 3.19 22.36 20.03 55 E20_Da NovelBoundary 0 5.63 2.50 41.63 9.66 9.68 6.47 6.71 8.79 2.20 4.06 2.00 5.70 6.17 50.62 18.05 10.85 17.48 3.65 3.58 24.03 2.29 2.33 12.63 56 E20b_E21a KnownJunction 1 30.23 0.00 70.78 22.34 20.03 26.41 7.29 10.80 12.62 5.29 25.32 61.67 20.29 170.29 106.68 40.93 48.90 38.22 9.51 50.30 0.00 17.39 23.05 57 ER20b ExonRegion 1 18.44 2.03 74.57 18.11 18.73 19.12 7.00 12.84 10.59 7.21 28.72 49.48 18.76 176.33 100.71 34.39 41.50 25.08 6.37 42.25 1.89 10.42 14.68 58 ER21a ExonRegion 0 32.64 0.08 74.38 18.51 5.75 5.84 8.39 19.12 18.13 9.66 45.84 37.04 27.85 125.54 118.49 45.76 50.17 62.73 17.46 36.59 1.99 12.81 14.36 59 E21a_E22a KnownJunction 0 127.28 0.00 87.37 19.31 8.66 5.22 15.55 21.48 23.73 18.29 78.97 70.52 51.78 111.78 112.62 109.29 67.04 116.86 61.37 32.53 2.78 30.62 19.63 60 E22_Aa NovelBoundary 0 17.34 0.00 10.02 4.13 0.00 2.84 1.85 6.49 3.33 4.24 2.68 0.00 0.00 4.94 14.09 3.85 12.25 14.76 0.00 2.68 0.00 0.00 0.00 61 ER22a ExonRegion 0 33.29 1.87 70.27 11.25 7.40 8.46 7.51 14.04 11.76 11.34 46.18 46.83 23.57 137.00 122.16 37.56 46.84 52.36 18.74 33.62 1.43 17.63 13.67 62 E22_Ab KnownBoundary 0 13.19 2.63 49.32 13.42 0.00 5.00 8.57 3.70 1.27 5.94 19.06 18.01 13.64 78.05 87.27 11.62 44.88 44.19 15.72 15.21 3.15 14.76 14.68 63 ER22b ExonRegion 0 24.45 2.29 51.51 11.22 12.67 3.28 6.04 8.81 10.84 8.06 25.75 31.55 23.45 100.51 80.65 20.09 43.61 24.01 16.88 19.14 3.15 8.69 7.20 64 E22_Da KnownBoundary 0 0.00 0.00 31.76 3.10 0.00 7.50 4.15 10.15 6.25 5.40 4.69 18.76 12.99 39.73 48.58 16.06 0.00 20.19 12.89 9.52 2.97 13.47 0.00 65 ER22c ExonRegion 0 12.75 1.17 18.59 3.68 0.00 2.15 0.64 2.51 3.85 4.54 8.40 16.76 9.22 34.37 38.27 7.10 17.90 9.86 10.40 12.81 1.47 4.66 0.05