Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZDHHC12 Gene 0 19.41 2.72 33.31 8.97 10.40 14.48 12.95 34.55 15.36 33.97 67.41 29.53 55.68 117.64 167.18 146.56 86.67 21.92 39.66 27.12 15.79 17.43 14.48 2 467312 Transcript 0 1.96 0.03 0.71 0.65 1.15 0.63 0.69 4.41 1.23 3.21 5.74 1.21 3.54 6.83 12.42 3.07 9.03 1.04 2.19 1.77 4.57 0.15 1.39 3 372667 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 372664 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 372672 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 452105 Transcript 0 0.95 0.04 2.30 0.45 0.05 0.35 0.87 1.94 0.85 2.61 5.58 2.16 3.07 9.18 12.51 10.20 7.63 0.76 2.20 2.71 0.95 1.04 0.61 7 406904 Transcript 0 10.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.69 5.85 26.62 14.30 18.79 19.91 21.32 0.00 0.00 0.00 0.00 3.12 0.00 8 372663 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 1.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER1b ExonRegion 0 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 ER1c ExonRegion 0 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.62 2.90 0.00 0.00 0.00 0.00 2.13 0.00 0.00 0.00 12 ER1d ExonRegion 0 2.65 0.00 5.72 2.61 4.24 7.03 4.41 1.58 1.13 1.82 5.80 0.00 3.52 12.59 38.68 39.13 11.83 0.31 10.88 7.27 0.92 1.74 5.14 13 ER1e ExonRegion 1 33.16 2.71 21.65 9.54 19.62 44.01 32.22 16.13 9.88 19.50 43.17 0.00 4.69 69.84 309.47 248.67 79.22 1.85 40.35 39.01 5.88 12.50 37.20 14 ER1f ExonRegion 0 54.67 3.63 27.18 8.90 14.81 29.01 26.92 28.40 16.46 23.83 40.66 7.65 13.74 85.11 216.89 210.89 81.96 12.26 40.58 28.86 10.07 15.85 26.48 15 E1_Da KnownBoundary 0 3.56 0.00 3.05 0.00 0.00 0.00 0.00 1.81 0.00 2.63 0.00 0.00 0.00 0.00 4.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 E1a_E1g KnownJunction 0 10.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.69 5.85 26.62 14.30 18.79 19.91 21.32 0.00 0.00 0.00 0.00 3.12 0.00 17 E1a_E1h KnownJunction 0 27.26 0.00 16.06 5.53 8.66 0.00 4.20 13.06 1.10 14.18 24.95 30.16 6.82 37.91 81.34 38.02 9.54 12.64 22.02 20.96 8.65 3.00 0.00 18 ER1g ExonRegion 0 1.21 0.00 1.52 1.49 1.91 3.06 0.00 0.00 0.71 1.80 0.55 0.00 0.00 0.00 1.24 0.00 2.28 0.00 3.34 0.00 0.00 0.00 0.00 19 E1_Db KnownBoundary 0 3.19 0.00 0.00 1.76 3.99 7.84 0.00 0.00 2.49 2.28 2.26 0.00 0.00 0.00 0.00 0.00 4.68 0.00 3.67 0.00 0.00 0.00 0.00 20 E1b_E1h KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 ER1h ExonRegion 0 2.41 0.09 0.91 0.60 1.85 1.90 2.08 2.84 1.89 1.53 1.76 3.62 3.95 3.31 6.11 5.18 4.75 1.35 1.76 2.68 0.31 0.44 0.49 22 E1_Ag KnownBoundary 0 0.00 0.00 1.39 1.66 0.00 0.00 2.16 1.89 3.73 1.67 2.58 0.00 0.00 2.47 4.45 15.64 4.49 0.00 0.00 0.00 3.09 0.00 0.00 23 ER1i ExonRegion 0 5.20 0.67 1.34 2.06 0.03 3.98 2.04 9.89 2.72 2.11 31.44 3.94 28.17 53.46 64.18 113.97 52.25 1.09 1.04 4.80 1.87 0.58 3.72 24 E1_Ah KnownBoundary 0 9.93 0.00 0.00 0.00 0.00 0.00 1.94 4.72 1.79 1.58 20.06 0.00 19.97 60.16 35.97 50.16 67.60 0.00 0.00 0.00 0.00 3.12 0.00 25 ER1j ExonRegion 1 31.65 5.49 73.55 17.92 4.98 9.16 7.30 76.85 37.38 71.96 171.99 30.31 53.83 203.59 403.34 272.15 178.49 47.50 111.98 68.91 34.82 33.96 41.42 26 E1c_E2a KnownJunction 0 65.27 12.50 90.06 27.44 6.54 17.43 15.50 106.96 33.80 109.95 177.89 67.67 77.27 261.46 370.23 236.26 159.51 42.70 40.47 67.05 22.55 17.51 59.16 27 ER2a ExonRegion 0 28.30 7.98 65.78 22.33 26.65 49.07 50.75 88.99 34.04 91.24 195.02 84.48 72.45 261.52 360.91 235.22 203.60 41.86 50.39 75.31 43.25 35.55 28.46 28 E2a_E3a KnownJunction 0 11.19 3.09 68.06 21.14 64.86 100.11 81.13 80.05 30.76 80.56 158.51 61.82 82.30 289.54 361.33 306.93 138.38 51.44 52.99 81.49 42.07 20.45 19.21 29 ER3a ExonRegion 0 23.34 4.27 86.00 23.99 22.51 33.66 26.47 93.65 37.73 92.58 171.54 85.64 185.13 338.44 482.40 438.82 187.29 74.50 114.76 82.84 45.66 59.09 46.11 30 E3_Da NovelBoundary 0 54.97 2.89 86.81 20.24 3.90 4.66 15.63 115.99 24.83 98.99 125.66 54.47 103.40 320.62 472.22 335.47 174.66 45.18 114.83 76.25 36.94 38.39 44.99 31 E3b_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 E3b_E4b KnownJunction 0 36.75 5.79 121.46 38.76 7.72 19.76 17.09 135.79 41.58 141.86 207.47 111.34 160.22 455.24 513.14 436.47 309.30 54.47 144.85 119.53 49.17 70.91 16.39 33 E3b_E4c KnownJunction 0 3.48 0.00 1.21 1.37 0.00 0.00 0.00 10.39 1.79 8.11 15.48 0.00 6.66 17.19 31.15 4.02 22.35 1.78 4.80 2.62 13.41 0.00 3.67 34 ER3b ExonRegion 0 30.25 2.39 104.59 29.02 2.68 15.53 13.40 132.38 36.62 127.98 207.05 107.22 151.74 491.06 582.98 444.42 288.54 55.22 147.09 110.39 60.15 62.87 38.52 35 ER4a ExonRegion 0 1.90 0.07 4.61 0.89 0.09 0.70 1.73 3.87 1.70 5.22 8.53 4.33 6.15 18.37 25.01 20.39 15.25 1.53 4.39 5.43 1.90 2.08 1.22 36 E4_Ac KnownBoundary 0 26.38 0.00 72.06 24.64 0.00 14.65 16.30 65.76 40.62 77.68 132.30 81.78 129.21 185.30 115.33 233.19 304.07 41.79 21.55 52.92 54.92 36.01 21.08 37 ER4b ExonRegion 0 29.63 0.74 96.80 28.56 2.68 20.76 15.53 101.04 44.69 120.58 192.41 116.90 157.97 394.73 439.28 387.19 338.19 50.48 97.01 95.45 61.00 58.24 19.89 38 ER4c ExonRegion 0 82.44 9.72 97.99 26.13 12.47 23.56 29.69 99.05 44.11 116.89 220.91 103.83 145.15 330.63 402.39 351.21 299.43 66.71 84.17 75.30 65.63 41.88 20.66 39 E4_Da KnownBoundary 0 29.04 8.88 53.01 10.29 15.28 16.07 11.70 44.57 13.69 38.98 88.97 30.31 25.65 63.28 93.33 100.32 87.14 14.01 34.07 24.10 24.09 13.10 0.00 40 E4a_E4d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 E4_Db KnownBoundary 0 24.82 0.00 12.24 0.00 0.00 5.22 6.58 12.32 1.77 11.44 27.90 0.00 6.82 17.72 23.73 16.24 30.48 7.50 18.45 21.09 6.24 5.57 4.27 42 E4b_E4e KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 E4_Dc KnownBoundary 0 75.05 18.55 68.18 24.54 50.17 24.13 32.15 73.69 33.71 83.22 152.67 70.22 179.70 223.44 370.98 376.91 162.88 54.93 120.57 67.24 15.14 44.09 11.35 44 ER4d ExonRegion 0 88.89 12.20 88.23 20.44 37.46 27.51 39.72 100.25 35.82 116.98 199.09 99.58 136.01 321.58 409.08 374.49 244.27 66.52 117.86 68.08 41.87 37.50 11.75 45 ER4e ExonRegion 0 70.21 14.24 96.48 23.82 37.34 32.69 35.63 102.28 34.91 110.95 173.29 72.28 162.93 278.64 375.14 387.41 243.98 76.88 105.39 71.97 27.88 41.31 16.60 46 ER4f ExonRegion 0 90.80 13.81 113.85 30.83 46.25 69.26 50.17 117.34 46.44 111.07 186.75 109.83 249.31 381.74 530.19 533.22 298.20 72.49 158.14 81.71 47.82 66.23 59.99 47 E4_Ad KnownBoundary 0 21.71 0.00 30.99 6.66 28.01 17.66 21.55 30.76 5.99 37.26 48.01 23.56 26.46 65.51 33.38 146.88 65.92 24.71 56.57 20.45 13.41 26.33 29.45 48 E4_Ae KnownBoundary 0 6.82 0.00 34.42 3.90 7.05 10.33 13.12 39.02 11.92 25.87 41.85 17.71 58.92 38.26 49.32 71.52 43.85 26.45 20.80 13.68 13.47 14.27 3.59 49 ER4g ExonRegion 0 42.33 4.07 79.65 13.63 40.14 40.34 37.07 63.95 29.64 71.11 143.03 73.60 154.77 321.58 426.48 326.93 181.55 66.52 101.93 38.30 37.46 39.59 29.37 50 ER4h ExonRegion 0 17.86 1.98 85.60 12.32 26.50 28.00 30.68 67.43 28.57 79.04 149.73 95.57 164.67 311.59 344.86 247.01 160.54 54.33 55.98 44.71 36.28 27.92 19.80 51 E4_Dd KnownBoundary 0 0.00 6.45 97.60 22.81 44.65 22.26 15.99 82.27 40.19 94.15 139.09 67.67 153.07 292.43 367.51 344.87 180.83 57.00 81.23 68.71 19.21 48.07 14.68 52 ER4i ExonRegion 0 29.54 4.78 64.90 16.49 22.14 21.48 20.57 52.70 27.10 54.93 119.99 40.84 90.65 210.22 274.61 236.68 144.06 35.83 70.98 34.40 26.06 31.67 20.22 53 ER4j ExonRegion 0 5.08 0.00 1.35 0.00 1.07 0.00 3.57 1.73 2.47 0.00 5.41 0.87 5.16 20.14 9.57 9.81 12.54 1.11 2.87 3.62 1.10 0.83 1.76 54 ER4k ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.00 1.62 0.00 2.97 0.00 0.00 0.00 2.13 0.00 0.00 0.00