Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C9orf117 Gene 0 2.33 1.93 6.27 1.51 2.45 2.52 2.73 3.60 3.01 4.64 2.61 1.21 1.94 4.67 5.19 4.25 3.17 4.48 8.28 5.02 4.11 2.50 3.90 2 496009 Transcript 0 0.44 0.37 0.19 0.05 0.41 0.33 0.58 0.00 0.05 0.05 0.10 0.85 0.49 0.85 2.66 0.08 0.25 0.10 0.17 0.49 0.28 0.21 0.45 3 373295 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 373293 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 464092 Transcript 0 0.20 0.11 0.88 0.28 0.44 0.15 0.22 0.52 0.76 1.36 0.43 0.00 0.27 0.74 0.76 0.82 0.56 0.75 2.90 0.65 0.73 0.35 0.49 6 461104 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 ER1b ExonRegion 0 0.05 1.04 0.55 0.00 0.68 0.94 0.70 0.72 1.88 0.00 0.02 0.00 0.00 0.26 0.57 1.52 0.00 0.70 4.95 1.23 0.00 0.00 0.00 9 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 Ix_AR1 ActiveIntronRegion 0 4.15 6.11 14.36 3.25 7.27 5.26 3.57 9.67 4.40 6.39 10.58 3.73 6.54 7.70 9.28 5.38 4.38 4.31 12.36 6.34 5.57 5.32 3.54 11 E2_Aa NovelBoundary 0 16.60 5.39 18.72 1.50 3.48 2.21 6.27 5.71 4.48 11.50 9.48 0.00 6.82 7.42 6.30 8.12 4.58 7.46 0.00 17.39 2.53 2.63 12.29 12 ER2a ExonRegion 0 3.83 7.51 11.58 4.55 5.02 6.84 8.63 5.68 7.26 9.82 7.20 1.34 5.38 8.73 7.83 11.68 9.90 11.41 10.41 14.25 8.16 5.08 7.64 13 E2_Da NovelBoundary 0 13.48 17.10 15.52 3.30 3.31 2.10 6.23 13.23 5.24 23.53 7.63 0.00 0.00 19.13 28.18 7.78 12.62 8.62 0.00 8.95 13.84 15.43 14.85 14 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.58 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.80 0.00 0.00 0.00 0.00 15 E2a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 Ix_AR3 ActiveIntronRegion 0 1.23 1.82 5.42 1.36 0.35 3.33 2.06 1.86 1.24 4.86 2.09 0.00 7.16 8.38 10.92 5.16 9.12 8.36 4.69 4.59 9.10 1.43 0.00 17 E3_Aa NovelBoundary 0 0.00 2.76 16.82 1.73 7.39 11.81 4.50 9.32 10.53 14.13 2.16 10.80 0.00 16.60 10.75 8.20 9.16 15.92 18.45 5.24 13.90 14.27 0.00 18 ER3a ExonRegion 0 7.29 9.84 12.03 3.45 11.86 5.07 5.82 3.26 2.29 9.49 5.70 4.17 6.95 10.31 16.26 7.60 10.27 8.24 18.05 18.99 11.18 8.28 7.25 19 E3_Ab KnownBoundary 0 19.48 21.90 18.39 5.83 32.00 2.78 7.95 0.00 4.72 11.31 11.11 6.30 20.29 7.59 4.45 32.98 17.02 14.38 30.59 18.28 20.08 8.14 8.54 20 ER3b ExonRegion 0 11.45 10.81 10.68 1.92 11.14 3.49 5.73 0.24 3.50 4.51 7.31 1.36 15.03 8.83 11.68 18.65 7.05 6.73 14.92 10.14 11.23 2.54 10.66 21 E3_Da NovelBoundary 0 0.00 20.65 6.15 1.80 7.39 2.78 14.93 8.67 9.14 6.53 14.90 25.81 13.64 17.66 4.45 7.52 8.23 26.03 17.13 17.45 9.08 10.29 11.18 22 E3a_E4a KnownJunction 0 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 1.79 1.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.05 0.00 0.00 0.00 0.00 23 Ix Intron 0 10.25 7.00 15.13 5.46 4.89 6.12 7.12 3.33 4.36 8.28 10.19 5.92 7.93 10.43 8.74 7.36 7.81 8.89 16.79 8.24 9.72 9.64 12.64 24 Ix_SR1 SilentIntronRegion 0 10.29 7.03 15.19 5.49 4.91 6.14 7.15 3.34 4.38 8.31 10.23 5.94 7.96 10.47 8.78 7.39 7.85 8.93 16.86 8.28 9.76 9.68 12.69 25 E4_Aa NovelBoundary 0 3.56 3.22 12.30 0.00 8.49 10.79 6.45 6.78 13.05 8.25 2.53 12.00 22.08 4.83 8.90 16.75 0.00 10.28 4.80 8.44 12.17 10.41 0.00 26 ER4a ExonRegion 0 3.22 1.16 8.80 0.77 2.04 3.88 5.79 3.95 5.85 6.50 2.21 1.91 1.47 9.98 9.21 6.79 5.03 6.96 15.36 11.74 9.60 4.34 10.61 27 E4_Da NovelBoundary 0 10.67 5.26 15.14 1.96 0.00 8.12 6.27 13.88 4.92 9.54 2.58 6.90 0.00 23.84 9.27 0.00 4.58 8.00 9.04 13.04 9.27 7.84 11.52 28 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.37 0.00 0.00 0.00 0.00 29 Ix Intron 0 3.34 2.57 16.71 1.28 2.96 2.90 5.02 6.91 4.65 8.91 4.27 2.17 0.00 8.51 9.38 6.57 4.69 9.42 8.55 8.73 11.48 5.26 6.50 30 Ix_AR1 ActiveIntronRegion 0 3.57 3.30 19.68 1.72 3.15 3.58 5.72 9.03 5.56 10.79 4.72 1.92 0.00 10.17 10.58 8.00 6.25 11.03 8.82 8.85 13.88 6.35 6.86 31 E5_Aa NovelBoundary 0 0.00 0.00 19.34 5.69 0.00 2.78 5.96 3.94 6.45 12.38 13.95 0.00 0.00 11.60 22.50 16.15 4.39 24.42 12.80 8.50 8.96 6.00 8.19 32 ER5a ExonRegion 0 0.50 1.39 8.18 0.72 3.69 6.44 1.65 4.52 3.71 5.46 3.33 3.28 0.00 7.04 6.69 6.59 3.03 1.33 10.19 7.34 7.98 6.98 7.54 33 E5_Da NovelBoundary 0 7.26 5.99 16.79 1.60 0.00 8.18 2.03 6.90 1.30 10.53 7.48 0.00 0.00 7.30 4.70 3.42 0.00 6.55 22.49 3.26 3.03 9.12 4.35 34 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 E5_Db NovelBoundary 0 3.78 0.00 4.91 3.66 4.16 2.90 6.09 6.53 6.08 6.63 0.00 0.00 0.00 2.30 10.38 4.36 3.55 13.02 12.71 3.00 6.05 0.00 7.77 36 E5b_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 ER5b ExonRegion 0 2.12 2.95 4.29 1.16 0.00 5.41 0.99 1.12 0.86 3.33 1.26 0.00 0.00 3.17 1.02 1.34 0.00 0.00 4.94 2.13 0.66 3.75 3.23 38 Ix Intron 0 4.79 2.93 9.01 1.67 1.10 2.64 4.08 4.77 4.16 3.87 4.77 3.67 2.38 6.97 9.27 3.06 2.04 4.16 11.79 4.38 7.70 5.14 6.64 39 Ix_AR1 ActiveIntronRegion 0 4.83 2.95 9.08 1.68 1.11 2.65 4.12 4.80 4.20 3.90 4.81 3.70 2.40 7.02 9.33 3.08 2.05 4.19 11.89 4.41 7.77 5.18 6.70 40 E6_Aa NovelBoundary 0 10.00 8.68 17.71 0.00 0.00 5.56 4.20 11.91 3.36 6.47 12.00 0.00 6.82 6.89 5.93 18.88 0.00 12.81 12.33 11.51 12.05 9.00 16.05 41 ER6a ExonRegion 0 2.41 2.31 13.03 2.12 2.95 6.11 4.42 7.62 5.76 10.70 4.95 6.26 3.10 9.32 3.61 6.91 6.96 5.37 29.26 9.81 9.07 4.59 9.82 42 E6_Ab KnownBoundary 0 3.63 0.00 18.60 1.37 0.00 0.00 8.39 4.93 2.86 16.44 7.42 6.15 0.00 4.94 4.45 8.37 4.21 0.00 17.79 2.62 5.81 9.00 4.35 43 E6_Da KnownBoundary 0 0.00 3.35 18.63 0.00 3.06 0.00 8.97 10.76 1.50 4.00 4.95 0.00 6.82 3.00 0.00 4.36 0.00 12.39 4.80 12.78 0.00 2.63 12.55 44 E6a_E6c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 1.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45 ER6b ExonRegion 0 0.00 2.03 26.45 1.36 2.45 0.92 10.59 11.67 1.24 16.44 7.09 3.25 4.69 11.50 3.38 9.91 3.30 6.01 15.13 11.52 4.77 8.33 12.73 46 ER6c ExonRegion 0 7.41 5.23 26.66 6.78 6.57 7.11 8.13 14.91 9.18 16.96 7.19 2.39 4.51 13.17 10.21 14.79 8.41 19.21 26.56 11.55 8.58 7.86 11.07 47 E6_Ac KnownBoundary 0 3.41 3.29 15.32 4.99 4.24 5.79 8.35 7.11 6.19 9.27 2.47 6.30 12.50 7.71 9.52 3.67 0.00 12.81 7.91 15.34 0.00 14.02 3.67 48 E6_Ad KnownBoundary 0 0.00 0.00 12.12 3.13 16.89 0.00 0.00 4.93 4.89 7.79 7.58 0.00 20.29 6.95 9.27 4.36 0.00 11.36 4.80 18.73 17.11 2.82 0.00 49 ER6d ExonRegion 0 2.19 1.96 16.27 4.51 8.12 1.71 3.93 8.94 7.28 9.29 3.73 2.39 19.89 11.82 8.30 5.53 0.23 15.29 4.06 20.54 9.12 10.92 1.32 50 ER6e ExonRegion 0 7.63 2.95 11.65 3.15 4.71 3.41 3.01 8.58 4.07 8.96 4.18 1.45 3.70 10.25 11.12 4.08 3.69 10.05 11.67 7.47 6.14 5.00 3.28 51 E6_Db NovelBoundary 0 3.78 0.00 11.27 3.96 0.00 5.45 0.00 5.54 1.50 4.62 2.68 6.15 0.00 12.66 4.45 7.18 0.00 4.19 0.00 11.51 19.83 7.41 0.00 52 E6b_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 E6b_E8b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.33 0.00 0.00 0.00 0.00 54 E6b_E8c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55 E7_Aa NovelBoundary 0 0.00 2.96 2.96 4.13 0.00 0.00 1.77 3.16 0.00 7.39 2.53 5.40 0.00 2.88 15.82 3.76 0.00 9.91 0.00 6.14 8.83 5.27 0.00 56 ER7a ExonRegion 0 3.50 1.66 6.00 1.11 2.22 7.48 2.48 7.19 2.98 5.59 6.36 0.00 0.00 4.74 5.46 1.62 4.50 5.01 8.62 7.00 7.79 3.43 5.61 57 E7_Da NovelBoundary 0 13.78 0.00 17.74 3.80 0.00 0.00 4.28 8.42 0.00 7.90 0.00 0.00 0.00 7.06 5.19 0.00 9.44 10.61 17.88 15.02 0.00 3.12 0.00 58 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59 E7a_E8b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 60 E7a_E8c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61 E8_Aa NovelBoundary 0 14.22 3.16 36.96 6.66 8.06 0.00 6.54 8.30 4.89 16.39 2.53 0.00 6.82 0.00 0.00 4.36 0.00 9.33 29.65 0.00 0.00 3.12 11.44 62 ER8a ExonRegion 0 2.18 1.83 0.93 0.25 2.06 1.66 2.90 0.01 0.24 0.23 0.49 4.25 2.43 4.27 13.30 0.38 1.27 0.48 0.85 2.46 1.42 1.07 2.27 63 E8_Ab KnownBoundary 0 0.00 0.00 2.87 3.06 0.00 0.00 1.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 64 ER8b ExonRegion 0 0.58 0.55 0.03 0.03 0.73 0.00 0.41 1.16 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 65 E8_Da KnownBoundary 0 0.00 0.00 0.00 0.00 4.24 7.67 0.00 1.60 0.00 0.00 0.00 0.00 0.00 2.47 0.00 3.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66 E8_Db KnownBoundary 0 0.00 0.00 11.62 0.00 0.00 0.00 0.00 2.34 1.74 4.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.49 2.41 0.00 0.00 67 ER8c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 68 ER8d ExonRegion 0 0.61 0.34 2.64 0.84 1.33 0.46 0.66 1.55 2.29 2.41 1.28 0.00 0.80 2.23 2.29 2.46 1.67 2.25 4.36 1.94 2.19 1.04 1.46 69 E8_Ac KnownBoundary 0 0.00 0.00 1.24 0.00 0.00 0.00 0.00 2.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.74 0.00 0.00 0.00 0.00 0.00 0.00 70 ER8e ExonRegion 0 0.00 0.00 2.36 0.51 0.00 1.15 1.24 4.04 0.71 0.00 0.05 0.00 0.00 0.00 1.54 0.00 1.63 0.00 1.23 0.00 0.00 0.00 0.00 71 E8_Dc KnownBoundary 0 0.00 0.00 0.00 2.06 0.00 0.00 2.25 7.06 1.71 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.71 0.00 0.00 0.00 0.00 72 ER8f ExonRegion 0 1.00 0.00 1.94 0.14 0.00 0.00 0.54 1.54 0.51 2.02 1.59 0.00 0.00 0.29 0.67 0.70 0.78 0.22 5.03 0.00 1.56 0.00 1.04 73 E8_Dd KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 1.81 2.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.95 0.00 0.00 0.00 0.00 0.00 74 ER8g ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00