Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FBXW5 Gene 0 76.41 45.35 173.20 50.83 30.34 68.30 33.08 115.09 106.22 131.79 236.11 41.99 66.06 253.09 302.82 160.86 143.13 135.13 84.17 91.33 211.11 131.00 132.27 2 459905 Transcript 0 3.22 8.22 10.64 2.48 1.91 7.86 4.11 5.96 7.05 2.24 12.71 0.00 0.00 8.15 13.85 3.38 4.21 11.61 4.52 0.00 11.52 3.80 5.68 3 483559 Transcript 0 36.58 13.78 27.34 6.60 9.61 18.29 11.78 30.86 24.08 28.66 43.00 7.54 13.72 57.04 58.99 61.86 33.29 37.48 14.94 18.70 37.14 29.19 54.20 4 428398 Transcript 0 3.63 0.00 3.08 0.00 0.00 7.50 0.00 2.09 3.50 5.86 4.53 0.00 0.00 0.00 4.45 0.00 9.35 0.00 0.00 2.88 2.66 0.00 0.00 5 325285 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 491246 Transcript 0 0.03 0.49 2.35 1.10 0.00 2.37 0.66 0.67 3.90 2.22 5.33 0.07 0.00 4.69 11.37 3.21 3.53 4.38 0.00 1.17 3.98 3.19 0.05 7 443788 Transcript 0 2.65 1.58 8.93 1.35 1.11 2.18 1.67 8.53 6.72 8.83 11.95 0.00 0.00 10.07 8.77 7.10 8.45 6.19 5.65 2.39 15.50 4.33 11.17 8 480818 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 433269 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 487794 Transcript 0 28.52 10.05 38.97 13.91 12.85 17.04 8.29 24.47 17.72 34.08 28.14 9.17 10.61 32.72 38.05 28.95 23.94 30.28 11.66 20.01 30.89 23.53 26.63 11 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER1b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 ER1c ExonRegion 0 4.98 0.33 2.42 0.00 0.00 1.24 2.65 0.00 0.03 3.35 7.57 0.00 0.00 0.26 6.90 6.51 9.37 0.15 1.38 0.00 21.50 3.04 7.78 14 E1_Ad KnownBoundary 0 21.26 0.00 9.37 1.60 0.00 10.90 12.19 4.15 2.95 17.19 18.11 0.00 0.00 5.12 15.20 17.00 38.90 3.52 4.33 0.00 55.35 11.39 32.44 15 ER1d ExonRegion 1 34.22 12.34 6.21 0.00 1.34 30.75 8.08 1.21 2.43 9.10 47.48 3.61 1.41 18.84 46.61 50.53 35.10 2.03 20.81 1.06 66.55 24.24 43.17 16 E1a_E2c KnownJunction 1 128.69 39.07 35.69 5.83 7.64 75.70 48.05 22.59 26.10 38.12 122.61 7.05 19.48 50.44 172.08 125.95 94.34 31.79 39.34 31.19 78.89 71.03 155.87 17 ER1e ExonRegion 1 69.52 26.20 16.40 1.47 3.70 57.91 18.84 10.24 12.68 17.29 103.34 3.16 9.92 42.10 120.29 86.19 78.21 9.03 40.31 9.98 62.64 58.58 94.88 18 ER2a ExonRegion 0 2.65 1.58 8.93 1.35 1.11 2.18 1.67 8.53 6.72 8.83 11.95 0.00 0.00 10.07 8.77 7.10 8.45 6.19 5.65 2.39 15.50 4.33 11.17 19 E2_Ab KnownBoundary 0 10.15 17.43 34.86 5.59 0.00 4.66 10.42 25.42 18.11 26.24 37.22 0.00 0.00 31.55 4.45 12.48 30.86 38.26 18.82 9.40 52.08 21.37 24.33 20 ER2b ExonRegion 0 14.77 12.53 42.99 5.98 4.37 11.30 5.62 34.22 12.70 19.54 30.18 3.09 8.14 26.81 33.75 16.92 24.79 32.62 6.83 14.20 59.99 27.34 26.19 21 E2_Ac KnownBoundary 0 18.08 11.71 55.79 3.83 4.33 16.64 6.49 48.51 18.23 13.43 29.27 5.85 6.17 31.26 41.78 16.66 30.29 37.93 0.00 15.02 55.48 15.25 12.21 22 ER2c ExonRegion 0 40.09 24.16 117.16 20.39 7.97 28.78 13.04 64.83 60.96 73.46 182.27 15.04 27.53 139.03 184.79 107.80 109.44 82.99 57.10 59.40 165.04 85.53 101.13 23 E2a_E3a KnownJunction 0 38.01 47.49 211.70 80.01 3.99 51.79 17.36 147.91 140.42 131.62 235.80 17.71 84.73 286.89 370.23 267.96 138.10 261.28 57.04 145.35 204.11 142.74 240.38 24 E2a_E4g NovelJunction 0 0.00 0.00 5.80 1.63 3.99 0.00 0.00 15.20 12.76 9.21 0.00 0.00 0.00 0.00 0.00 4.19 0.00 8.12 0.00 0.00 0.00 5.94 0.00 25 ER3a ExonRegion 0 52.47 58.00 277.33 78.50 38.24 97.86 46.63 186.07 190.98 197.02 383.15 42.97 48.38 324.07 347.03 240.87 218.92 222.56 122.96 149.64 314.74 164.36 180.51 26 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.30 0.00 2.68 0.00 0.00 0.00 0.00 0.00 3.65 2.57 0.00 0.00 0.00 0.00 0.00 27 E3a_E4b KnownJunction 0 3.63 0.00 3.08 0.00 0.00 7.50 0.00 2.09 3.50 5.86 4.53 0.00 0.00 0.00 4.45 0.00 9.35 0.00 0.00 2.88 2.66 0.00 0.00 28 E3a_E4c KnownJunction 0 114.32 158.13 306.76 88.07 49.49 132.08 58.74 241.84 215.36 195.98 584.04 98.43 114.12 482.31 653.07 363.32 310.99 350.12 261.84 223.90 378.51 228.22 293.48 29 ER4a ExonRegion 0 0.07 0.98 4.70 2.20 0.00 4.73 1.32 1.34 6.49 4.44 7.98 0.14 0.00 9.38 22.74 6.42 3.41 6.20 0.00 2.33 7.96 6.38 0.09 30 E4_Ac KnownBoundary 0 19.48 6.51 21.20 10.16 0.00 10.56 0.00 14.29 13.74 19.72 22.64 0.00 6.82 31.96 42.15 16.41 9.54 20.69 4.05 3.26 10.38 19.96 18.95 31 ER4b ExonRegion 0 11.29 8.07 27.08 12.90 2.32 15.16 3.57 18.15 20.96 24.43 39.37 2.16 4.69 37.30 52.32 26.25 18.26 24.14 9.45 11.28 31.95 22.57 14.49 32 ER4c ExonRegion 1 137.40 103.37 369.59 111.61 49.43 106.97 54.80 260.95 242.08 248.18 537.72 33.67 93.15 530.82 544.07 380.68 308.82 366.42 200.94 221.28 427.27 281.56 281.02 33 E4_Da KnownBoundary 0 228.48 98.47 442.18 132.28 50.00 113.46 70.17 300.99 272.60 299.67 471.17 35.56 110.71 596.74 548.24 419.21 335.48 359.69 161.51 240.71 444.92 361.83 280.50 34 ER4d ExonRegion 0 126.18 84.53 326.33 90.36 45.31 109.08 48.13 224.20 208.57 246.71 449.86 81.29 111.44 496.75 439.33 396.65 300.88 296.00 180.50 176.47 396.57 259.05 291.69 35 E4_Db KnownBoundary 0 45.86 24.47 52.95 12.95 11.97 35.95 14.40 45.06 25.23 38.52 42.54 0.00 20.45 40.67 54.27 59.73 50.40 39.55 22.78 19.11 17.17 17.21 12.12 36 E4b_E4e KnownJunction 0 179.07 74.39 288.46 98.36 59.68 98.30 43.68 213.34 182.55 223.44 446.80 90.78 57.95 498.50 512.02 412.11 277.89 282.71 306.55 184.59 345.77 318.84 330.53 37 ER4e ExonRegion 0 24.12 13.43 55.77 18.13 7.84 30.75 16.38 27.37 22.52 37.74 29.80 1.21 10.80 36.15 56.07 43.06 35.16 26.26 16.00 11.23 18.96 22.09 16.66 38 E4_Ad KnownBoundary 0 21.86 9.21 53.61 15.78 15.87 10.39 12.14 37.95 20.72 28.58 23.48 6.30 0.00 23.25 29.92 32.04 14.03 18.78 8.00 8.05 20.08 17.51 16.73 39 E4_Ae KnownBoundary 0 40.97 36.57 41.31 17.75 11.71 42.08 6.58 28.79 17.91 30.52 17.21 5.55 0.00 75.81 87.40 46.83 20.38 30.34 21.27 12.34 12.60 20.45 28.17 40 ER4f ExonRegion 0 34.48 21.32 68.07 24.88 10.27 27.80 10.29 38.03 25.78 53.28 40.53 7.12 4.99 64.55 77.30 49.76 25.77 40.71 22.19 20.59 30.57 29.44 35.52 41 E4_Af KnownBoundary 0 166.10 79.00 215.37 75.48 94.74 111.13 65.10 141.99 148.23 164.61 315.24 97.98 97.23 406.62 442.92 348.11 231.04 193.09 195.39 140.81 344.84 238.44 254.47 42 ER4g ExonRegion 0 171.59 87.22 343.24 101.00 79.88 124.43 58.74 229.76 197.53 267.48 469.12 86.11 80.43 557.25 564.99 440.09 293.66 292.36 252.47 191.17 397.48 312.91 305.52 43 E4_Dc KnownBoundary 0 110.76 72.03 240.53 65.79 51.27 103.52 44.38 135.17 141.52 189.35 448.32 55.22 98.05 285.24 322.27 271.98 250.21 165.11 95.53 156.34 294.74 225.09 190.79 44 ER4h ExonRegion 0 143.80 86.61 324.22 98.61 80.90 123.30 59.50 211.58 220.65 273.37 509.03 93.21 120.01 493.73 507.72 395.12 311.84 249.55 179.13 193.37 434.26 301.37 270.00 45 ER4i ExonRegion 0 138.02 89.46 316.84 97.68 39.52 93.89 54.83 220.15 221.48 278.41 474.51 84.59 136.96 445.62 482.19 299.87 291.11 235.91 146.77 156.18 422.84 270.64 262.83 46 E4_Dd KnownBoundary 0 38.60 29.86 40.42 7.79 4.24 7.84 11.66 58.78 16.90 30.54 38.33 5.40 20.45 69.40 52.04 64.34 23.09 38.43 3.95 26.78 35.27 25.53 47.29 47 E4d_E4g KnownJunction 0 203.22 128.66 384.82 122.50 44.99 138.10 82.63 206.52 172.57 280.98 473.23 73.52 118.34 420.86 459.11 260.27 290.51 298.26 153.04 163.31 389.69 248.61 196.59 48 ER4j ExonRegion 0 36.58 13.78 27.34 6.60 9.61 18.29 11.78 30.86 24.08 28.66 43.00 7.54 13.72 57.04 58.99 61.86 33.29 37.48 14.94 18.70 37.14 29.19 54.20 49 E4_Ag KnownBoundary 0 15.85 9.67 36.90 10.06 25.04 10.39 6.05 44.11 31.34 25.20 25.11 11.85 6.82 35.85 54.89 42.81 30.95 26.82 8.00 8.63 32.37 36.19 37.13 50 ER4k ExonRegion 0 90.32 68.01 228.69 64.27 39.34 107.02 52.96 142.99 132.72 177.38 322.93 84.66 140.98 392.07 461.42 218.82 226.85 167.01 116.70 110.45 312.45 204.57 173.55 51 E4_De KnownBoundary 0 350.51 150.70 331.98 129.89 85.91 172.46 93.76 338.74 243.28 309.53 618.21 62.42 157.13 472.07 501.02 455.09 400.28 433.64 239.91 176.41 493.23 315.47 334.28 52 E4e_E5a KnownJunction 0 6.45 16.44 21.29 4.96 3.82 15.73 8.21 11.91 14.09 4.49 25.43 0.00 0.00 16.30 27.69 6.75 8.42 23.21 9.04 0.00 23.04 7.59 11.35 53 ER4l ExonRegion 0 259.39 90.53 280.66 95.20 81.11 150.61 78.97 226.01 182.98 228.21 571.78 113.29 187.60 506.82 547.42 354.67 347.14 304.19 213.48 150.55 515.63 294.47 301.33 54 E4_Df KnownBoundary 0 76.01 36.31 81.22 27.00 0.00 34.47 29.77 32.53 24.91 52.92 42.12 24.01 6.82 48.15 80.60 23.41 22.16 42.45 26.82 22.05 52.82 41.33 34.83 55 E4f_E5a KnownJunction 0 160.62 35.78 184.68 60.80 52.38 80.92 29.41 129.55 131.48 113.63 331.40 78.78 91.88 226.74 432.29 138.17 215.15 158.48 100.05 78.23 358.68 125.77 147.17 56 ER4m ExonRegion 0 53.34 20.10 68.04 25.76 18.23 34.07 16.58 42.37 35.44 57.40 46.06 10.70 14.41 58.55 67.21 42.77 35.07 54.47 23.33 32.16 61.79 44.23 44.98 57 E4_Dg NovelBoundary 0 63.57 37.23 106.68 45.08 20.03 38.61 26.85 83.83 46.67 84.21 59.80 0.00 26.46 70.40 86.90 42.47 58.34 86.43 14.31 45.51 64.43 59.64 39.78 58 E4g_E5a KnownJunction 0 3.70 0.00 9.91 2.06 7.47 0.00 0.00 6.57 0.00 10.77 10.21 7.65 6.82 6.89 8.90 15.12 12.81 6.09 0.00 7.86 0.00 2.82 8.28 59 E5_Aa NovelBoundary 0 86.68 38.28 86.40 44.52 12.73 60.14 25.75 49.86 38.25 48.57 51.43 0.00 12.82 59.33 59.34 33.75 34.03 69.48 12.52 39.76 65.55 32.88 72.90 60 ER5a ExonRegion 0 146.17 60.33 256.27 91.56 52.79 144.96 66.12 174.85 148.35 185.72 417.69 111.31 171.47 460.54 610.77 260.86 238.18 230.02 160.26 159.23 384.10 220.63 226.28 61 E5_Da NovelBoundary 0 25.93 6.45 30.84 16.71 14.26 12.21 2.25 30.60 27.89 22.62 22.27 6.30 25.81 40.73 46.36 22.99 21.04 38.68 13.74 8.69 20.45 29.15 31.50 62 E5a_E6a KnownJunction 0 114.17 37.30 217.11 53.37 63.92 130.04 54.76 118.83 139.47 156.39 277.18 57.17 80.19 325.09 416.10 155.26 155.77 100.69 90.26 88.21 300.92 90.26 130.09 63 E6_Aa NovelBoundary 0 35.12 5.99 40.98 17.61 3.74 16.24 17.97 34.09 24.48 28.34 36.32 6.30 0.00 18.13 44.50 18.80 30.20 25.04 3.95 15.02 35.83 7.84 0.00 64 ER6a ExonRegion 0 56.51 37.91 175.30 48.29 28.37 71.31 25.80 97.64 115.24 134.17 203.14 45.09 92.21 252.57 350.72 122.75 118.27 39.33 50.49 104.90 230.89 120.96 84.66 65 E6_Da KnownBoundary 0 64.01 42.43 235.15 93.79 36.84 97.05 35.02 176.45 140.04 169.42 168.62 30.31 103.73 243.10 421.54 121.68 129.59 128.67 72.19 140.30 180.70 194.78 79.56 66 ER6b ExonRegion 0 160.18 83.86 280.42 77.45 53.92 108.80 55.35 179.08 159.91 202.58 368.50 69.24 120.77 444.91 549.21 248.02 231.91 247.82 143.34 164.89 367.51 194.04 226.87 67 E6b_E7a KnownJunction 0 194.63 73.74 214.10 60.07 64.26 158.15 53.30 136.82 142.56 175.52 324.24 101.13 64.77 346.40 467.27 176.45 296.96 168.26 106.83 193.92 266.57 146.47 166.71 68 ER7a ExonRegion 0 87.90 53.88 221.90 67.06 41.97 79.18 38.18 150.15 138.38 169.99 276.97 40.60 62.40 308.67 406.33 176.71 145.30 157.35 91.33 115.61 219.57 149.03 143.76 69 IG41 Intergenic 0 5.58 13.50 15.57 4.67 7.12 10.23 6.74 15.71 7.94 14.97 2.55 2.40 2.91 2.28 4.63 2.61 3.07 12.75 6.75 9.34 2.56 2.15 4.78 70 IG41_SR2 SilentIntergenicRegion 0 5.66 13.46 16.23 4.70 6.77 10.08 7.23 15.37 8.21 15.41 2.43 2.41 3.06 2.17 4.47 2.67 2.95 12.73 7.09 10.05 2.67 2.57 5.40 71 IG41_AR1 ActiveIntergenicRegion 0 5.42 14.03 13.51 4.68 8.65 11.13 5.06 17.44 7.15 13.74 3.06 2.42 2.41 2.76 5.34 2.45 3.62 13.17 5.64 6.93 2.21 0.64 2.56