Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 INPP5E Gene 0 36.35 70.37 106.25 34.37 26.01 55.09 25.88 62.31 61.90 58.40 70.46 13.35 13.21 51.18 41.92 42.88 45.48 84.26 40.97 42.49 47.71 33.41 29.74 2 371712 Transcript 0 7.16 15.54 38.37 13.46 7.59 22.37 6.03 25.37 25.03 34.77 25.02 4.88 4.47 25.70 17.43 17.16 20.04 35.47 16.05 17.78 25.07 20.50 11.45 3 445731 Transcript 0 0.00 0.00 5.17 4.89 0.00 0.00 3.71 6.16 4.34 0.00 7.26 0.00 0.00 0.00 0.00 0.00 0.00 7.13 4.05 0.00 0.00 0.00 7.09 4 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 ER1b ExonRegion 0 0.88 2.42 4.48 0.57 0.41 3.27 1.04 3.09 5.16 3.32 4.81 0.49 0.39 4.59 2.29 1.92 3.17 8.51 2.80 1.82 2.79 2.31 1.40 6 E1a_E2a KnownJunction 0 13.93 30.98 59.10 12.79 4.33 59.68 19.52 35.20 59.17 40.00 81.60 6.00 6.82 51.86 24.72 36.91 67.32 110.27 34.54 47.36 42.94 43.48 15.54 7 I1 Intron 0 2.12 6.31 10.58 4.03 4.70 8.23 6.25 8.81 8.19 9.78 12.87 3.46 2.63 13.97 11.01 9.01 7.23 21.63 9.08 10.23 7.53 3.85 6.16 8 I1_SR1 SilentIntronRegion 0 2.52 6.37 13.34 4.54 5.19 9.30 4.34 8.45 9.61 8.92 18.74 1.60 1.85 19.73 24.99 14.63 9.35 23.29 9.03 11.10 7.23 5.90 7.87 9 I1_AR2 ActiveIntronRegion 0 2.89 7.78 4.97 2.62 5.04 6.24 1.48 4.22 1.78 4.57 4.20 4.50 2.35 10.40 5.86 9.03 2.41 20.72 9.13 7.53 8.43 2.60 2.82 10 I1_AR3 ActiveIntronRegion 0 2.37 8.02 9.07 3.43 6.01 9.16 8.66 10.87 9.42 12.72 15.33 5.73 3.55 15.80 10.08 9.67 7.47 26.69 10.66 12.12 9.52 3.66 7.83 11 I1_SR2 SilentIntronRegion 1 0.00 1.81 13.72 4.15 4.28 6.07 7.12 12.25 8.34 9.38 15.29 0.00 2.50 16.24 5.16 7.60 7.04 26.20 18.83 5.11 8.52 2.78 7.90 12 I1_AR4 ActiveIntronRegion 0 1.16 7.95 13.37 6.41 3.71 11.23 8.79 9.73 7.73 9.35 11.49 2.75 4.54 17.38 9.67 9.51 9.05 27.86 10.29 11.15 8.06 3.74 4.97 13 ER2a ExonRegion 0 14.39 28.19 62.36 18.12 9.06 37.53 15.03 48.77 58.89 55.19 77.11 5.87 7.15 66.67 36.45 30.78 52.15 110.84 29.44 26.18 49.80 32.95 20.34 14 E2a_E3a KnownJunction 0 10.45 35.78 89.29 25.47 12.14 57.52 14.13 55.78 62.12 73.36 64.33 0.00 0.00 55.80 41.04 35.72 89.67 181.28 39.62 34.52 60.48 18.92 31.84 15 E3_Aa NovelBoundary 0 6.52 5.99 22.94 5.99 0.00 11.13 4.33 10.43 6.25 15.85 6.69 0.00 0.00 5.24 5.19 15.12 3.55 38.92 0.00 6.52 4.70 2.94 16.30 16 ER3a ExonRegion 1 10.13 29.76 74.49 24.63 10.40 41.20 18.45 48.15 50.21 69.57 69.03 1.99 2.78 64.38 41.39 30.84 66.29 117.82 52.98 48.35 64.18 31.93 28.35 17 E3_Da NovelBoundary 0 7.26 5.46 35.13 12.45 12.22 21.52 22.04 14.54 15.02 16.41 14.42 0.00 0.00 24.19 13.47 15.38 12.25 58.70 23.15 15.08 14.09 10.72 15.62 18 E3a_E4a KnownJunction 0 7.11 12.04 71.46 26.34 11.88 29.64 4.06 48.75 43.37 59.90 36.90 12.60 13.15 41.20 27.32 30.50 37.68 57.74 21.27 25.06 29.78 40.41 15.28 19 E3a_E4b KnownJunction 0 0.00 0.00 5.17 4.89 0.00 0.00 3.71 6.16 4.34 0.00 7.26 0.00 0.00 0.00 0.00 0.00 0.00 7.13 4.05 0.00 0.00 0.00 7.09 20 I3 Intron 0 5.28 7.22 22.05 7.79 6.41 8.61 6.09 11.85 12.35 13.11 19.46 2.00 1.88 17.36 8.00 14.82 11.71 44.11 11.91 9.59 10.97 7.59 7.88 21 I3_SR1 SilentIntronRegion 0 5.32 7.27 22.22 7.83 6.46 8.68 6.14 11.94 12.44 13.21 19.61 2.02 1.89 17.50 8.06 14.93 11.80 44.44 12.00 9.66 11.06 7.65 7.93 22 E4_Aa NovelBoundary 0 17.41 12.43 35.42 6.49 12.31 16.35 4.37 14.95 8.04 16.87 28.95 0.00 13.64 24.31 13.60 12.05 17.77 44.44 18.35 18.28 2.29 8.39 4.10 23 ER4a ExonRegion 0 14.63 32.34 78.02 26.16 9.79 52.06 13.77 52.71 56.46 78.30 61.23 6.94 4.74 57.11 40.96 34.42 40.83 81.84 42.93 43.94 70.50 41.57 30.51 24 E4_Da NovelBoundary 0 10.15 0.00 6.15 7.06 0.00 0.00 6.76 3.78 9.11 4.67 23.06 0.00 0.00 4.77 0.00 7.95 0.00 33.62 21.84 11.76 0.00 2.94 0.00 25 E4a_E5a KnownJunction 0 19.93 30.98 128.00 41.35 30.31 72.91 9.85 65.02 85.21 94.37 63.54 0.00 13.64 73.99 27.44 35.46 76.20 116.19 73.13 52.60 32.25 51.07 53.95 26 ER4b ExonRegion 1 18.38 32.44 113.79 38.28 16.66 58.43 9.15 59.32 78.21 85.65 62.73 0.00 7.25 73.60 28.88 33.50 59.12 121.20 52.85 52.13 50.59 50.48 50.86 27 E5_Aa NovelBoundary 0 7.04 9.41 19.93 17.81 0.00 8.12 7.55 16.43 14.79 9.00 23.74 0.00 0.00 4.41 8.90 15.12 9.54 41.95 13.37 0.00 2.53 5.39 0.00 28 ER5a ExonRegion 0 7.55 40.55 138.90 37.88 22.12 67.39 19.64 70.94 90.71 78.21 91.47 12.48 16.81 75.28 37.09 44.31 81.81 134.82 55.77 61.22 67.86 42.89 56.97 29 E5_Da NovelBoundary 0 3.56 3.16 31.02 27.30 0.00 2.16 10.38 34.01 16.90 27.88 22.80 0.00 6.66 2.24 6.30 8.72 13.18 43.15 27.67 5.82 6.18 10.23 0.00 30 E5a_E6a KnownJunction 0 13.78 28.35 115.70 25.14 20.71 41.34 22.13 42.63 69.82 59.47 45.12 6.00 15.58 17.72 5.19 48.88 22.63 67.57 17.32 30.10 42.13 8.70 52.16 31 E5a_E7a NovelJunction 1 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.71 0.00 0.00 0.00 0.00 0.00 1.53 4.42 0.00 0.00 0.00 0.00 32 I5 Intron 0 5.27 11.80 26.00 10.67 4.44 5.58 7.50 14.24 9.92 10.63 13.63 0.00 1.18 6.95 3.07 9.86 5.93 35.54 10.57 2.65 5.79 2.59 3.65 33 I5_SR1 SilentIntronRegion 0 5.31 11.90 26.20 10.75 4.47 5.62 7.56 14.36 10.00 10.71 13.74 0.00 1.19 7.00 3.09 9.93 5.98 35.83 10.65 2.67 5.83 2.60 3.68 34 E6_Aa NovelBoundary 0 9.93 6.38 57.45 12.89 0.00 0.00 10.69 23.41 19.79 7.95 22.27 0.00 0.00 0.00 0.00 4.02 8.23 44.89 4.80 0.00 0.00 6.00 7.94 35 ER6a ExonRegion 0 13.39 45.55 98.59 28.99 16.90 53.01 13.66 47.12 69.96 63.56 76.67 12.67 6.04 60.75 23.91 38.11 54.65 105.48 35.39 44.23 50.52 30.48 28.77 36 E6_Da NovelBoundary 0 0.00 24.54 119.57 20.04 3.40 18.85 11.92 23.12 33.80 43.73 30.27 11.70 6.33 44.74 18.67 7.35 12.44 63.42 13.74 27.04 15.81 10.72 10.59 37 E6a_E7a KnownJunction 0 7.56 33.55 65.23 22.57 16.04 56.73 28.93 64.53 69.88 46.23 39.75 0.00 6.17 33.08 4.45 27.26 30.67 95.80 22.49 51.77 43.99 35.15 34.74 38 I6 Intron 0 9.85 16.20 70.46 10.30 5.81 13.85 4.11 21.85 15.23 25.28 27.59 4.03 2.00 24.27 22.58 17.53 23.22 44.18 15.82 13.65 17.99 9.27 17.01 39 I6_SR1 SilentIntronRegion 0 9.89 16.26 70.74 10.34 5.84 13.90 4.13 21.94 15.29 25.39 27.71 4.05 2.01 24.37 22.67 17.60 23.31 44.35 15.88 13.70 18.07 9.31 17.08 40 E7_Aa NovelBoundary 0 10.30 9.21 103.13 26.87 18.68 22.94 12.19 17.66 14.24 22.11 42.33 16.21 0.00 28.61 41.91 45.97 35.62 44.73 8.38 23.78 15.07 17.94 20.32 41 ER7a ExonRegion 0 19.69 44.88 88.97 23.55 14.30 51.06 17.52 44.43 59.61 45.52 74.35 6.44 9.67 56.51 34.56 35.50 42.06 95.60 32.38 48.79 55.34 30.55 41.38 42 E7a_E8a KnownJunction 0 48.23 94.26 134.15 62.56 16.81 88.02 25.17 78.53 102.43 82.73 99.18 12.60 0.00 56.04 48.83 64.43 51.15 155.66 61.93 60.66 59.86 48.19 32.01 43 E8_Aa NovelBoundary 0 18.15 15.72 16.50 1.47 0.00 14.82 4.15 6.86 6.45 6.07 2.68 0.00 6.82 7.30 8.90 8.72 4.77 25.91 0.00 5.56 0.00 8.27 0.00 44 ER8a ExonRegion 0 54.59 152.94 134.20 56.21 48.49 127.23 62.12 85.16 99.13 87.07 152.73 18.66 17.63 81.65 55.12 58.32 79.85 125.81 65.63 82.43 78.71 44.74 42.96 45 E8_Da NovelBoundary 0 3.78 2.76 28.09 15.28 0.00 10.45 0.00 18.32 13.40 28.96 10.27 0.00 0.00 14.07 6.30 3.42 3.83 40.83 4.05 14.25 2.47 8.33 14.94 46 E8a_E9a KnownJunction 0 51.86 275.02 93.82 26.30 38.71 56.10 43.46 76.97 60.56 45.26 62.91 48.47 12.99 66.34 27.44 42.55 44.69 84.73 44.52 43.08 29.71 42.62 54.55 47 E8a_E10a NovelJunction 0 0.00 0.00 16.74 0.00 0.00 7.44 0.00 1.64 1.53 8.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48 I8 Intron 0 6.43 7.58 26.92 5.82 4.18 14.63 4.48 19.88 11.33 18.09 9.56 1.55 2.49 18.21 12.46 11.61 10.02 26.53 6.91 16.06 15.29 3.44 10.44 49 I8_AR1 ActiveIntronRegion 0 6.45 7.61 27.01 5.84 4.19 14.68 4.49 19.95 11.37 18.15 9.59 1.55 2.50 18.28 12.51 11.65 10.05 26.61 6.93 16.11 15.34 3.45 10.47 50 E9_Aa NovelBoundary 0 23.71 12.63 27.44 0.00 7.30 28.00 12.81 24.23 7.12 24.10 10.06 0.00 0.00 30.55 25.22 0.00 17.86 13.76 11.95 17.58 25.76 6.00 3.16 51 ER9a ExonRegion 0 69.29 224.88 189.40 73.17 51.93 103.71 48.41 95.89 91.55 102.86 120.63 34.48 29.82 87.73 52.37 87.82 75.29 137.96 73.40 80.11 77.82 53.76 46.02 52 E9_Da NovelBoundary 0 13.19 11.25 21.14 3.23 4.33 4.66 0.00 18.40 9.84 26.06 6.84 0.00 0.00 2.24 0.00 0.00 8.42 12.60 8.09 12.53 13.41 0.00 0.00 53 E9a_E10a KnownJunction 0 94.31 176.48 275.18 109.18 57.30 58.26 59.44 115.99 109.20 103.66 133.67 48.77 53.41 86.06 41.04 125.44 79.10 184.01 101.37 73.70 71.23 68.03 53.18 54 I9 Intron 0 3.86 4.01 17.24 3.70 5.69 14.77 2.61 12.53 9.30 18.82 5.57 0.00 3.52 8.14 2.93 2.71 2.03 11.57 5.80 6.14 6.70 2.21 4.46 55 I9_AR1 ActiveIntronRegion 0 3.88 4.04 17.34 3.72 5.72 14.86 2.63 12.60 9.35 18.93 5.60 0.00 3.54 8.18 2.94 2.72 2.05 11.64 5.84 6.17 6.74 2.23 4.48 56 E10_Aa NovelBoundary 0 11.11 0.00 18.80 16.55 16.89 34.13 4.50 14.38 10.16 15.10 1.95 0.00 6.82 11.71 17.80 8.03 15.90 6.26 4.05 8.44 3.15 2.39 8.71 57 ER10a ExonRegion 0 81.21 134.88 207.95 67.28 54.61 98.42 51.28 123.61 111.40 103.64 121.37 27.24 27.18 84.27 84.32 82.79 75.95 137.42 74.13 74.09 80.49 60.81 52.13 58 ER10b ExonRegion 0 6.88 17.79 3.98 1.36 8.70 7.79 6.29 0.00 0.31 0.86 1.93 0.00 0.00 4.47 1.45 3.72 1.65 2.31 0.00 2.13 0.00 0.00 0.00 59 IG26_AR2 ActiveIntergenicRegion 0 3.57 6.73 13.29 10.93 5.83 6.76 4.18 18.71 10.48 19.91 0.17 0.00 0.00 0.43 7.80 5.88 5.94 19.63 13.94 14.85 0.00 2.13 2.35 60 IG26_AR1 ActiveIntergenicRegion 0 0.46 3.52 9.52 7.00 4.18 3.15 1.97 17.96 9.26 16.44 1.50 0.74 0.67 2.88 6.30 6.39 1.75 17.76 8.32 6.70 0.68 2.18 3.21