Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MED22 Gene 0 33.39 40.74 41.45 24.46 23.74 28.44 31.68 29.37 22.41 37.78 64.89 25.93 23.76 91.63 85.60 73.51 82.66 92.01 55.79 44.97 58.77 31.43 30.07 2 457204 Transcript 0 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 3 494177 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 482295 Transcript 0 1.62 5.46 1.91 0.00 6.42 6.77 6.76 5.99 2.02 4.66 7.98 1.37 2.96 16.53 10.73 9.79 9.41 6.86 2.37 5.78 7.42 3.40 2.25 5 371999 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 486395 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 344469 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 343730 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 422801 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 471524 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.66 0.00 0.00 11 446777 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.24 0.00 0.00 0.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 476080 Transcript 0 0.69 0.00 1.30 0.30 0.00 0.00 0.00 0.40 0.00 0.00 2.16 3.63 0.00 5.33 2.98 5.85 1.22 2.23 4.57 0.00 0.89 0.74 0.00 13 491289 Transcript 0 6.51 7.80 4.50 2.64 8.90 4.54 7.55 5.63 6.04 5.15 9.42 6.11 6.41 10.59 8.21 10.08 12.76 9.68 7.36 8.86 4.72 3.56 5.88 14 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 2.90 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 15 E1_Ae KnownBoundary 0 3.78 0.00 0.00 0.00 4.33 12.32 3.89 0.00 0.00 1.26 9.48 0.00 0.00 7.24 5.69 0.00 0.00 1.91 0.00 3.13 14.33 0.00 4.10 16 ER1b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 1.83 0.00 1.38 0.00 0.69 1.93 0.00 0.00 0.32 5.80 0.00 0.00 0.00 0.00 0.00 4.41 0.00 0.00 17 ER1c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 3.67 0.00 1.73 0.00 1.15 3.87 0.00 0.00 1.62 5.80 0.00 0.00 0.00 0.00 2.13 4.41 0.00 0.00 18 ER1d ExonRegion 0 0.12 0.79 1.09 1.06 0.30 14.06 2.94 1.73 0.69 1.78 5.80 0.00 0.00 5.59 13.54 0.66 0.37 1.64 1.24 2.13 13.59 0.00 4.73 19 E1_Af KnownBoundary 1 23.56 20.79 19.72 2.06 24.70 171.95 61.21 15.36 10.56 13.19 38.33 5.40 0.00 11.30 48.09 46.06 51.05 22.47 36.90 22.56 55.72 11.21 33.80 20 ER1e ExonRegion 1 9.52 7.71 5.41 1.36 15.16 76.10 26.76 3.02 1.90 6.31 27.30 0.00 0.00 16.85 37.60 20.31 27.51 4.62 17.92 6.56 40.49 4.34 15.91 21 ER1f ExonRegion 1 16.54 31.21 12.93 2.64 22.39 91.35 57.42 11.43 6.45 12.69 61.46 1.94 14.36 30.26 70.70 54.17 47.49 22.81 55.13 12.81 52.48 9.82 37.52 22 E1_Da KnownBoundary 0 0.00 12.43 8.84 3.60 3.48 11.02 14.66 6.57 1.50 1.26 19.32 0.00 0.00 2.41 6.30 16.06 8.60 10.03 9.32 3.26 14.89 0.00 0.00 23 E1a_E1g NovelJunction 0 0.00 21.97 6.50 3.83 4.07 16.30 14.79 7.60 6.94 9.08 7.48 0.00 0.00 2.83 5.69 8.20 13.28 14.96 8.75 3.07 29.53 5.88 4.10 24 E1a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 E1_Ag KnownBoundary 0 9.11 5.53 13.72 19.11 15.53 33.73 16.91 23.33 18.14 19.47 13.53 0.00 0.00 7.30 28.80 49.30 22.81 45.93 74.17 22.31 2.35 10.96 51.99 26 ER1g ExonRegion 1 12.70 40.16 15.93 6.81 18.73 56.85 54.61 24.63 14.82 25.81 47.84 4.33 23.45 25.99 92.84 75.05 48.69 62.82 95.56 29.26 47.38 10.42 55.80 27 ER1h ExonRegion 1 9.29 34.98 20.52 12.28 9.73 36.58 33.08 28.95 13.94 33.48 34.31 0.54 16.06 35.02 44.75 56.47 65.11 71.88 64.94 30.05 44.13 9.14 39.50 28 E1_Db NovelBoundary 1 0.00 13.42 25.84 9.62 0.00 20.05 6.01 19.30 5.44 17.41 34.80 0.00 26.62 32.90 5.69 11.19 80.22 28.27 16.19 14.45 57.45 2.57 0.00 29 E1b_E3a KnownJunction 0 0.00 0.00 0.00 1.86 0.00 2.90 4.46 1.89 1.56 1.67 9.79 0.00 0.00 4.83 0.00 4.27 18.70 1.70 0.00 5.24 8.03 0.00 0.00 30 E1c_E3a KnownJunction 1 0.00 20.65 36.10 13.19 0.00 5.68 8.66 15.85 11.57 48.78 79.97 0.00 13.31 55.57 60.57 12.65 103.04 52.19 20.33 30.68 90.26 4.84 0.00 31 E1c_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.66 0.00 0.00 32 E1d_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 ER1i ExonRegion 1 0.00 15.25 31.19 9.68 0.13 14.67 6.82 17.54 7.04 34.87 59.05 0.00 20.40 50.67 36.41 14.27 100.18 42.13 21.02 24.15 79.44 4.06 1.62 34 ER1j ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 0.48 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 ER2a ExonRegion 0 1.37 0.00 2.61 0.60 0.00 0.00 0.00 0.81 0.00 0.00 4.32 7.25 0.00 10.65 5.95 11.70 2.44 4.46 9.14 0.00 1.77 1.49 0.00 36 E2_Ab KnownBoundary 0 0.00 0.00 4.67 2.06 0.00 0.00 0.00 2.55 0.00 0.00 8.00 5.55 0.00 2.47 8.90 3.25 0.00 3.81 9.22 0.00 6.30 0.00 0.00 37 ER2b ExonRegion 0 0.02 0.42 2.12 1.16 0.00 1.35 0.97 1.16 1.35 0.64 6.90 2.71 1.28 9.79 8.47 4.45 6.58 9.23 4.56 0.80 2.25 2.52 3.23 38 E2_Da KnownBoundary 0 0.00 6.71 3.49 4.06 0.00 0.00 0.00 4.23 0.00 0.00 10.21 0.00 0.00 24.13 15.33 21.45 4.77 19.94 36.80 0.00 0.00 3.12 0.00 39 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 ER2c ExonRegion 0 8.83 9.08 4.34 2.03 9.47 6.95 11.38 7.61 5.25 6.27 11.47 13.26 13.64 22.21 19.38 19.36 26.58 11.91 12.33 14.09 8.07 4.72 11.50 41 E2b_E3a KnownJunction 0 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 1.79 0.00 11.53 0.00 0.00 4.59 0.00 3.93 4.77 3.94 0.00 3.26 0.00 2.76 0.00 42 I2 Intron 0 4.23 2.71 5.68 0.68 4.16 2.65 3.82 6.87 3.27 2.09 15.89 2.94 2.88 14.84 12.69 16.51 16.14 10.31 10.97 5.91 8.57 2.32 6.85 43 I2_SR1 SilentIntronRegion 1 4.25 2.73 5.71 0.68 4.19 2.67 3.85 6.91 3.29 2.10 16.00 2.96 2.90 14.93 12.77 16.61 16.24 10.37 11.04 5.95 8.63 2.33 6.89 44 E3_Ab NovelBoundary 0 0.00 4.87 13.72 2.60 7.64 0.00 7.42 6.24 1.13 16.76 40.80 0.00 18.51 25.13 13.10 7.35 29.45 11.77 21.84 10.16 42.13 6.49 14.60 45 ER3a ExonRegion 1 1.06 19.06 45.34 11.75 2.68 9.63 8.94 21.39 16.98 46.31 92.78 3.25 19.35 75.32 80.15 27.49 133.27 53.82 27.47 34.31 93.11 14.32 8.44 46 ER3b ExonRegion 0 12.15 29.45 61.97 40.90 20.13 41.97 17.29 74.39 52.54 81.35 106.68 28.10 62.56 154.52 153.69 139.34 125.43 213.87 147.82 100.74 81.98 38.59 82.78 47 E3_Da KnownBoundary 0 0.00 0.00 1.54 0.00 7.81 2.56 4.15 5.83 4.92 10.64 2.26 0.00 0.00 6.89 4.45 12.05 4.49 5.72 8.94 6.33 2.59 2.69 0.00 48 E3a_E4a KnownJunction 0 44.90 79.33 78.59 43.42 53.31 55.14 54.89 79.60 70.02 78.14 78.91 62.72 50.32 122.73 61.56 39.73 88.36 126.10 61.18 76.83 87.66 16.72 23.82 49 ER3c ExonRegion 0 1.62 5.46 1.91 0.00 6.42 6.77 6.76 5.99 2.02 4.66 7.98 1.37 2.96 16.53 10.73 9.79 9.41 6.86 2.37 5.78 7.42 3.40 2.25 50 E3_Db NovelBoundary 0 3.56 9.21 23.39 0.00 0.00 6.64 4.06 8.71 7.41 14.00 12.48 6.30 0.00 17.36 8.90 12.48 12.16 6.14 13.84 2.75 2.59 0.00 8.02 51 I3 Intron 0 2.69 5.92 4.36 2.27 4.00 4.66 5.83 7.69 3.16 4.72 14.01 6.05 2.60 14.76 10.39 8.66 15.77 10.84 7.84 7.47 8.39 2.64 7.46 52 I3_SR1 SilentIntronRegion 1 2.69 5.93 4.37 2.28 4.00 4.66 5.84 7.70 3.17 4.73 14.03 6.06 2.60 14.78 10.40 8.67 15.80 10.86 7.86 7.48 8.40 2.65 7.46 53 E4_Aa NovelBoundary 0 13.19 13.16 3.37 3.63 7.56 5.51 9.49 11.50 8.97 2.98 32.32 12.75 6.82 24.60 28.56 11.02 25.81 17.29 14.12 11.38 21.62 7.84 4.35 54 ER4a ExonRegion 0 27.51 68.92 66.75 40.17 48.46 130.00 106.61 64.42 51.40 70.42 137.02 64.12 62.83 142.92 141.89 80.48 167.51 140.28 90.30 105.57 110.85 32.18 42.93 55 E4_Da NovelBoundary 0 14.60 68.28 61.65 32.53 20.54 137.31 113.41 52.90 35.97 57.91 121.29 24.76 58.28 94.59 152.79 84.68 154.09 117.89 64.38 72.03 107.06 32.15 36.28 56 E4a_E5a KnownJunction 0 8.96 26.84 8.49 5.46 6.96 43.67 39.26 11.79 5.93 18.72 34.01 12.30 25.97 28.02 15.20 30.93 56.94 22.01 26.82 36.11 45.16 9.92 20.83 57 E4b_E5a KnownJunction 0 22.97 111.69 80.22 51.04 11.80 108.23 77.06 72.21 65.10 73.98 118.92 73.07 74.51 125.49 123.49 86.73 162.32 162.21 85.46 101.56 110.95 30.13 7.94 58 ER4b ExonRegion 0 14.93 80.67 71.21 43.23 13.68 113.59 80.47 62.13 46.80 67.79 131.87 65.90 67.22 130.56 136.84 97.92 173.85 153.77 81.76 87.71 121.33 35.42 22.68 59 ER5a ExonRegion 0 25.68 96.70 75.14 59.84 35.14 67.69 54.30 91.68 72.35 96.53 131.53 70.98 83.51 192.93 141.53 116.60 147.34 221.24 110.75 115.21 122.96 52.46 41.36 60 E5_Da KnownBoundary 0 24.60 114.72 89.38 73.38 32.60 46.00 41.51 124.29 85.97 86.33 160.36 112.39 121.10 156.87 126.46 129.97 151.19 225.13 117.37 128.79 133.87 54.31 80.92 61 ER5b ExonRegion 0 26.90 93.52 88.96 73.60 44.22 47.60 52.98 100.83 61.64 90.67 151.46 88.93 84.68 258.75 221.10 201.94 153.72 269.67 145.91 123.99 109.48 78.16 86.30 62 E5_Db KnownBoundary 1 13.93 55.78 65.58 38.99 35.74 16.87 35.77 52.12 22.83 40.62 86.50 30.61 28.73 117.02 41.29 89.63 92.57 180.65 94.03 50.49 38.36 31.78 39.86 63 E5_Dc KnownBoundary 0 14.00 15.72 34.48 2.06 28.78 9.82 29.85 18.44 15.68 38.33 84.60 49.37 37.50 83.41 53.90 89.81 110.43 80.67 79.34 36.62 69.93 18.13 23.05 64 E5c_E5b KnownJunction 0 10.22 55.65 44.00 35.29 27.93 41.91 27.78 67.48 47.77 58.45 2.00 0.00 0.00 0.00 4.45 0.00 0.00 48.00 32.00 20.58 2.66 6.00 0.00 65 ER5c ExonRegion 0 28.04 88.46 97.88 63.37 57.53 52.95 59.58 92.26 55.73 99.78 154.63 86.05 79.73 220.47 148.69 150.84 205.89 249.45 162.06 96.01 110.74 54.95 57.63 66 ER5d ExonRegion 0 20.82 34.39 54.66 24.97 23.37 27.38 40.50 23.67 18.58 44.54 99.65 48.32 46.74 181.30 130.85 131.03 133.01 161.10 85.25 62.67 97.96 53.53 49.46 67 E5_Dd KnownBoundary 1 35.49 53.15 64.34 34.00 41.68 35.66 43.63 27.89 15.60 48.97 102.24 42.76 0.00 231.50 159.84 106.30 107.99 164.53 127.91 70.82 106.20 60.80 48.57 68 ER5e ExonRegion 0 33.34 51.09 67.09 31.18 37.74 43.50 57.60 23.86 10.62 50.40 125.98 32.66 40.07 179.25 158.35 111.43 156.82 186.66 105.62 76.93 106.78 66.45 59.97 69 E5_De KnownBoundary 0 20.67 69.26 63.54 29.97 37.27 77.63 81.39 31.09 15.71 59.74 122.45 38.26 46.43 164.93 209.78 126.55 187.75 169.13 95.53 99.58 105.08 59.34 85.45 70 ER5f ExonRegion 0 54.51 88.88 72.12 49.30 35.47 40.10 59.96 38.98 32.06 68.26 142.34 59.80 45.17 189.05 167.87 163.13 187.00 183.02 119.97 77.99 117.64 74.69 57.99 71 E5_Df KnownBoundary 0 43.64 54.53 100.09 28.70 30.90 24.59 59.93 29.00 37.01 76.31 144.09 55.37 66.07 185.06 180.23 188.67 167.09 190.89 135.53 69.35 115.46 67.36 50.45 72 E5f_E5c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 73 ER5g ExonRegion 0 47.01 36.74 62.25 27.27 22.68 33.66 32.92 23.25 15.49 42.61 106.05 31.03 25.53 160.63 139.23 120.43 136.10 135.17 77.99 66.57 99.78 46.97 45.89 74 E5_Ab KnownBoundary 0 95.35 85.84 91.87 39.39 61.21 73.42 71.41 33.89 25.78 59.02 158.20 36.61 61.03 180.18 160.21 161.33 170.45 180.20 82.54 78.04 148.08 66.01 71.96 75 ER5h ExonRegion 0 81.36 127.53 125.02 72.86 45.29 96.06 83.79 118.71 64.56 103.21 134.02 39.18 34.41 182.89 201.35 143.03 158.55 234.36 114.93 103.57 143.48 81.60 49.85 76 E5_Ac KnownBoundary 0 78.01 140.90 124.66 69.79 61.63 64.17 66.07 125.36 50.98 112.34 117.45 64.37 55.03 190.54 104.95 153.29 121.36 246.40 70.78 68.39 123.93 50.82 67.95 77 ER5i ExonRegion 0 116.89 93.55 101.87 60.18 46.99 70.92 67.28 86.86 60.34 92.25 113.27 40.79 33.29 150.62 188.54 120.50 136.56 157.14 86.49 86.80 106.86 57.90 46.62 78 E5_Dg KnownBoundary 0 2.82 0.00 4.85 1.96 0.00 2.73 0.00 0.00 3.04 2.20 2.47 0.00 0.00 0.00 0.00 3.85 0.00 9.33 4.24 0.00 0.00 0.00 4.10 79 E5_Dh KnownBoundary 0 3.11 0.00 1.57 5.69 0.00 5.17 0.00 7.97 3.12 6.72 2.58 6.00 0.00 0.00 0.00 0.00 0.00 2.07 7.34 5.31 3.03 0.00 0.00 80 ER5j ExonRegion 0 6.35 2.03 4.90 5.45 8.03 3.67 2.65 6.91 6.18 10.32 1.93 4.33 0.00 8.12 5.80 5.94 0.00 9.24 12.74 10.64 4.41 0.00 2.94 81 ER5k ExonRegion 0 10.72 14.31 7.92 5.89 17.23 6.66 11.26 9.29 11.06 9.18 5.25 5.07 5.60 4.97 5.24 6.97 6.94 13.19 9.74 9.21 6.09 3.19 6.14