Order	SeqName	SeqType	IsAE	NBL01_MYCN	NBL05_MYCN	NBL09_MYCN	NBL10_MYCN	NBL02	NBL03	NBL04	NBL06	NBL07	NBL08	NBL11_Rel2	NBL11_Rem1	NBL11_Rel1	NBL12_Rel_Left	NBL12_Rel_Right	NBL13_Rel_Left	NBL13_Rel_Right	NBL14_MYCN_Met	NBL14_MYCN_Pri	NBL15_MYCN_Rel1	SKP01	SKP02	SKP03
1	CDK9	Gene	0	124.21	57.60	132.89	82.34	87.79	88.19	72.27	198.35	172.34	187.14	236.25	64.59	87.28	252.09	283.93	248.84	202.12	116.53	140.40	92.63	146.18	102.43	114.42
2	421939	Transcript	0	0.00	0.00	0.26	0.00	0.00	0.78	0.56	2.58	1.89	1.76	6.85	0.00	0.00	0.00	0.00	12.43	7.10	8.35	11.25	0.48	8.43	0.00	7.02
3	373265	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
4	373264	Transcript	0	0.00	1.60	3.33	3.70	2.29	1.18	8.61	4.69	2.91	3.19	14.22	2.16	0.00	6.61	8.50	3.82	11.08	4.22	4.32	6.53	1.10	7.29	3.78
5	480353	Transcript	0	12.15	3.99	3.59	4.59	2.28	7.40	7.99	1.73	2.20	5.52	11.38	2.41	0.00	23.10	17.94	11.89	2.81	10.06	4.72	5.20	15.51	4.94	4.35
6	496284	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
7	491521	Transcript	0	8.13	4.82	7.48	8.82	8.45	5.21	3.76	15.01	14.24	15.63	23.81	6.61	5.92	18.89	22.14	24.09	20.33	11.18	16.43	12.32	17.63	10.97	11.44
8	498339	Transcript	0	18.77	20.86	21.55	7.01	11.18	12.31	12.92	19.95	17.20	27.46	23.38	11.76	6.98	52.63	42.29	40.11	49.03	29.44	11.14	12.78	21.00	16.63	14.75
9	ER1a	ExonRegion	0	0.00	0.00	0.26	0.00	0.00	0.78	0.56	2.58	1.89	1.76	6.85	0.00	0.00	0.00	0.00	12.43	7.10	8.35	11.25	0.48	8.43	0.00	7.02
10	E1_Ab	KnownBoundary	0	0.00	3.09	1.63	0.00	0.00	0.00	0.00	5.87	4.37	6.47	15.95	0.00	0.00	0.00	0.00	10.25	9.16	21.27	21.74	3.26	0.00	0.00	11.01
11	ER1b	ExonRegion	0	2.56	0.42	0.79	0.00	1.15	4.85	0.75	4.80	2.15	5.81	16.24	0.72	1.42	5.55	6.69	8.05	6.40	3.31	5.91	3.42	8.29	0.49	4.11
12	E1_Ac	KnownBoundary	0	27.12	6.38	9.73	0.00	8.49	26.01	1.72	14.62	21.76	31.19	24.95	0.00	13.15	33.96	37.83	15.81	8.79	12.77	4.05	9.59	17.85	0.00	3.76
13	E1_Ad	KnownBoundary	1	145.66	55.52	9.96	0.00	95.25	86.31	83.95	16.88	18.11	42.47	136.35	0.00	8.28	34.14	176.65	73.40	109.68	32.62	33.88	12.40	110.15	21.98	68.29
14	ER1c	ExonRegion	1	53.08	23.59	5.69	0.00	27.93	39.17	31.62	6.91	7.16	22.53	87.29	0.00	13.88	32.74	103.63	24.61	36.18	6.73	14.27	13.11	75.28	6.67	14.21
15	ER1d	ExonRegion	1	84.58	45.98	52.30	33.56	40.41	56.86	52.09	104.07	96.99	110.37	156.18	15.31	28.90	108.60	131.90	140.39	126.07	73.30	97.27	45.26	121.18	56.34	61.17
16	E1a_E2a	KnownJunction	0	201.96	84.33	173.50	86.80	58.23	92.96	80.64	311.46	267.39	299.35	387.57	60.02	63.96	325.04	313.86	238.31	364.38	166.10	263.44	163.12	225.30	159.08	146.31
17	ER2a	ExonRegion	0	117.67	80.64	152.50	84.48	80.31	99.94	61.13	269.07	275.53	273.86	409.74	62.30	80.61	347.84	381.24	401.52	333.13	216.79	195.55	157.01	221.23	178.27	220.98
18	E2a_E3b	KnownJunction	0	157.81	102.09	163.48	118.67	141.60	120.61	65.27	310.15	278.67	308.54	409.79	122.74	99.51	315.74	318.07	497.99	388.50	225.46	298.46	172.77	225.73	177.52	225.70
19	ER2b	ExonRegion	0	103.59	92.64	144.93	102.67	132.00	107.58	62.89	276.36	270.08	268.44	407.20	111.36	82.34	330.42	322.52	512.53	370.80	238.26	260.31	159.93	209.35	161.82	278.17
20	ER3a	ExonRegion	0	8.13	4.82	7.48	8.82	8.45	5.21	3.76	15.01	14.24	15.63	23.81	6.61	5.92	18.89	22.14	24.09	20.33	11.18	16.43	12.32	17.63	10.97	11.44
21	ER3b	ExonRegion	0	146.19	106.35	212.27	144.13	200.40	178.43	81.90	403.40	372.05	368.66	512.96	133.00	155.76	380.21	346.57	459.43	392.81	227.14	332.67	195.59	260.50	182.36	221.23
22	E3_Da	KnownBoundary	0	265.23	171.48	336.92	203.04	422.67	441.05	219.58	579.02	528.38	504.52	605.84	244.88	217.19	488.79	430.56	682.13	551.94	273.55	566.89	219.68	322.54	307.51	336.16
23	ER3c	ExonRegion	0	148.48	124.60	286.77	203.81	291.98	372.32	197.19	522.88	481.13	458.87	594.16	177.90	182.06	554.12	430.62	581.55	492.33	231.81	465.64	189.36	333.29	296.11	277.56
24	E3b_E4a	KnownJunction	0	146.99	124.06	297.62	237.33	228.52	309.65	236.80	543.49	484.86	476.50	521.34	174.66	226.77	555.01	510.66	530.54	461.99	176.88	425.52	194.95	325.63	294.78	225.19
25	I3	Intron	0	42.79	2.15	6.61	7.97	12.11	9.68	8.79	11.28	12.49	13.66	25.37	12.14	8.49	28.28	28.30	34.99	22.41	6.23	13.46	8.99	9.64	5.97	11.96
26	I3_SR1	SilentIntronRegion	0	36.96	0.97	3.48	13.28	9.70	7.19	6.02	10.91	6.41	14.41	25.50	6.21	15.30	26.41	25.14	25.91	22.91	5.02	11.78	9.84	8.21	6.33	5.81
27	I3_AR1	ActiveIntronRegion	0	46.69	1.88	4.87	10.12	12.31	3.97	11.79	14.48	14.87	17.70	24.28	13.28	2.23	32.97	28.00	42.10	24.68	7.84	15.93	11.82	9.31	5.04	16.65
28	I3_SR2	SilentIntronRegion	0	45.08	3.29	10.45	2.52	14.02	16.19	8.73	9.32	15.44	10.29	26.70	15.95	8.43	26.67	31.52	36.94	20.80	6.03	13.10	6.37	11.17	6.56	13.18
29	E4_Aa	NovelBoundary	0	82.68	2.76	17.36	29.60	11.88	4.43	3.93	30.39	27.11	12.17	30.17	25.36	27.43	45.03	37.09	31.70	49.93	13.18	23.72	16.04	8.46	14.88	23.05
30	ER4a	ExonRegion	0	189.98	104.54	263.43	183.12	135.55	146.10	119.24	431.91	399.04	418.18	563.62	206.39	196.28	457.53	469.36	445.94	445.27	200.13	290.14	207.95	292.43	233.89	211.33
31	E4a_E5a	KnownJunction	0	375.92	160.10	260.99	233.34	196.77	194.66	162.56	466.23	372.59	395.60	562.51	122.14	259.56	535.76	592.37	567.46	437.03	255.52	356.62	141.70	320.62	273.65	215.46
32	ER5a	ExonRegion	0	294.66	114.23	253.36	174.03	194.79	166.97	119.58	402.64	346.08	361.08	546.45	201.43	258.51	500.01	500.79	475.34	448.19	222.33	280.31	180.67	316.48	213.54	234.53
33	E5_Da	KnownBoundary	0	265.53	131.88	276.34	130.15	225.13	174.39	101.75	394.68	352.25	381.82	447.27	305.80	244.46	419.69	485.07	450.39	381.02	231.60	251.40	180.44	285.84	189.09	200.52
34	E5a_E7b	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	ER5b	ExonRegion	0	175.93	96.15	212.04	101.03	91.28	85.51	66.55	253.12	236.11	298.42	287.44	116.09	134.27	361.40	362.45	295.24	268.69	143.16	133.59	124.57	218.03	119.41	136.54
36	E5_Db	NovelBoundary	0	57.12	9.41	17.62	8.86	11.80	23.11	28.00	17.66	17.13	24.90	33.11	12.45	19.15	67.16	47.10	42.38	39.46	37.93	12.61	15.60	37.13	13.47	15.71
37	E5b_E6b	KnownJunction	0	286.35	133.53	200.35	105.08	82.43	164.05	114.12	264.11	221.09	224.94	301.23	97.98	133.60	423.16	376.54	352.90	308.46	144.34	186.92	86.48	207.70	129.02	180.12
38	ER5c	ExonRegion	0	12.15	3.99	3.59	4.59	2.28	7.40	7.99	1.73	2.20	5.52	11.38	2.41	0.00	23.10	17.94	11.89	2.81	10.06	4.72	5.20	15.51	4.94	4.35
39	E6_Aa	NovelBoundary	0	15.11	6.18	19.96	6.16	8.66	0.00	17.05	16.96	20.23	22.43	23.90	0.00	0.00	30.55	40.79	44.01	22.63	37.47	4.80	5.69	19.77	19.72	0.00
40	ER6a	ExonRegion	0	18.77	20.86	21.55	7.01	11.18	12.31	12.92	19.95	17.20	27.46	23.38	11.76	6.98	52.63	42.29	40.11	49.03	29.44	11.14	12.78	21.00	16.63	14.75
41	E6_Ab	KnownBoundary	0	54.60	25.52	40.15	14.55	28.52	33.28	20.98	33.19	23.84	38.31	43.96	6.30	6.82	63.28	45.74	44.43	51.99	54.06	30.49	13.68	20.88	19.78	23.73
42	ER6b	ExonRegion	0	218.66	102.25	206.10	103.94	116.46	161.34	86.67	248.33	236.33	276.44	279.64	100.07	132.01	428.29	395.52	332.10	267.59	218.49	157.81	106.80	233.99	134.13	138.41
43	E6_Da	KnownBoundary	0	288.87	103.07	262.73	157.79	142.78	174.50	83.11	305.88	299.13	337.95	308.87	67.67	151.45	360.12	474.44	386.99	299.86	276.78	181.37	129.43	271.51	131.65	126.42
44	ER6c	ExonRegion	0	205.84	107.69	257.30	158.11	83.41	137.79	99.28	315.55	292.38	325.51	367.27	98.88	187.28	465.04	574.31	483.70	338.40	295.30	214.77	170.29	291.04	166.92	179.78
45	E6b_E7a	KnownJunction	0	234.34	69.66	328.76	178.57	126.99	160.42	136.82	384.70	324.07	337.41	371.83	84.03	202.26	499.80	600.29	519.27	362.69	287.81	289.04	187.02	273.55	167.72	208.63
46	I6_SR2	SilentIntronRegion	0	28.43	1.04	14.90	12.54	6.38	4.13	6.64	13.55	10.97	16.16	18.00	11.68	17.45	17.99	41.81	30.05	21.09	7.50	17.05	11.60	13.45	11.79	12.61
47	ER7a	ExonRegion	0	256.05	75.20	332.62	174.91	87.48	160.29	117.59	396.44	325.21	363.06	526.69	101.30	229.17	556.98	638.37	483.21	450.08	292.55	276.33	194.00	330.03	190.59	225.79
48	E7_Ab	KnownBoundary	0	286.79	57.10	393.42	207.97	96.35	129.36	115.44	452.76	388.31	403.01	652.17	102.78	148.04	495.50	608.32	569.68	494.44	373.79	292.24	230.61	345.21	165.82	239.36
49	ER7b	ExonRegion	0	215.59	61.89	340.02	190.36	93.79	127.74	90.02	388.24	352.41	394.22	485.98	119.17	180.87	503.31	691.52	450.44	437.49	270.72	229.35	202.30	274.75	169.35	217.55
50	E7_Da	KnownBoundary	0	313.46	98.40	380.59	198.94	115.37	149.57	90.05	466.11	423.40	479.59	559.46	145.85	222.06	554.89	671.00	504.74	463.21	316.99	225.89	171.04	351.51	188.91	243.46
51	ER7c	ExonRegion	0	215.60	84.17	330.46	188.01	117.96	138.92	92.16	392.32	366.62	381.84	534.02	90.87	156.49	608.83	753.41	557.82	407.74	297.38	332.21	216.63	280.87	214.02	265.62
52	E7_Db	KnownBoundary	0	251.16	109.45	339.20	167.61	115.70	138.33	117.25	404.50	349.50	368.68	352.14	80.28	215.25	542.06	510.66	402.20	305.66	231.93	331.40	188.68	277.07	205.93	178.58
53	ER7d	ExonRegion	0	127.66	56.03	109.16	72.37	105.52	87.67	85.66	179.52	143.73	155.34	183.43	50.94	71.87	224.74	260.60	227.53	162.41	85.79	124.95	76.20	117.04	91.73	102.43
54	ER7e	ExonRegion	0	0.00	1.60	3.33	3.70	2.29	1.18	8.61	4.69	2.91	3.19	14.22	2.16	0.00	6.61	8.50	3.82	11.08	4.22	4.32	6.53	1.10	7.29	3.78
55	IG50	Intergenic	0	33.78	26.55	42.99	16.63	46.50	27.19	37.05	49.25	32.34	35.88	19.75	14.93	9.52	25.04	35.33	34.41	24.27	20.89	22.40	19.50	13.43	16.12	19.88
56	IG50_AR3	ActiveIntergenicRegion	0	31.42	27.50	38.15	16.80	47.50	30.14	44.92	45.40	32.10	33.37	22.67	20.70	9.56	31.93	37.38	43.47	29.23	21.46	22.09	19.89	12.42	17.33	24.25
57	IG50_SR3	SilentIntergenicRegion	0	58.60	44.90	46.15	21.13	73.73	29.89	50.69	60.95	34.54	40.25	15.91	9.68	11.00	17.12	35.27	30.90	24.46	12.01	24.15	16.58	3.18	16.80	11.17
58	IG50_AR4	ActiveIntergenicRegion	0	20.71	11.04	11.82	0.88	35.55	20.43	19.67	5.80	5.82	3.69	4.42	10.82	5.03	9.16	10.57	7.64	3.07	15.97	17.06	13.98	5.51	0.00	12.59
59	IG50_AR5	ActiveIntergenicRegion	0	30.40	20.41	54.43	16.67	38.42	24.80	23.92	56.45	36.09	42.54	19.76	10.49	9.99	21.58	36.97	27.14	20.18	26.45	24.73	22.55	21.21	16.30	19.68