Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PPP6C Gene 0 225.43 269.86 120.56 86.67 166.89 87.70 152.83 162.85 116.72 204.55 185.16 256.53 200.54 167.87 157.21 123.17 146.08 57.97 88.15 120.41 37.73 129.65 53.43 2 451402 Transcript 0 0.29 1.68 1.90 1.17 2.74 0.00 2.14 3.89 0.73 3.62 5.02 0.00 0.00 2.81 3.00 7.77 3.16 1.34 0.73 0.93 0.45 0.66 1.75 3 415905 Transcript 0 6.30 0.00 2.78 3.53 0.00 0.00 2.16 2.30 2.89 10.15 18.43 0.00 6.82 4.77 4.45 11.54 20.57 2.32 4.80 9.33 3.15 11.08 7.85 4 373547 Transcript 0 2.12 0.00 0.00 1.36 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 456642 Transcript 0 3.68 0.20 1.16 0.00 1.19 0.00 3.45 2.69 1.54 1.27 5.18 4.72 2.17 3.32 4.77 3.67 1.44 0.84 0.00 1.72 0.20 0.00 0.00 6 373546 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 ER1a ExonRegion 0 1.87 1.88 0.76 1.32 0.00 4.60 0.46 0.00 0.77 0.00 1.62 0.00 0.00 1.68 2.33 1.24 1.38 1.11 0.00 0.00 0.00 0.00 7.27 8 E1_Ab KnownBoundary 0 0.00 2.70 0.00 2.06 0.00 0.00 1.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 ER1b ExonRegion 0 9.49 5.98 1.26 1.32 0.00 5.92 7.00 0.00 0.64 0.92 12.87 0.00 3.35 11.28 9.62 8.24 10.37 3.54 6.73 3.59 9.19 0.89 5.29 10 E1_Ac KnownBoundary 0 22.67 8.55 1.83 0.00 4.07 15.79 17.93 1.77 2.60 2.74 24.80 0.00 6.66 23.84 24.35 24.95 20.57 13.14 8.85 8.37 25.70 2.33 23.22 11 ER1c ExonRegion 1 58.06 57.36 25.42 11.14 39.46 45.28 55.22 23.45 22.33 46.84 72.49 18.35 11.94 63.11 67.17 72.64 68.89 17.04 35.80 41.97 38.49 38.69 43.42 12 E1_Da KnownBoundary 0 6.89 0.00 4.73 0.00 0.00 0.00 0.00 2.26 1.79 1.50 2.26 0.00 0.00 2.30 4.45 0.00 4.77 2.36 0.00 0.00 0.00 0.00 0.00 13 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 E1a_E4a KnownJunction 1 40.45 45.85 51.92 22.57 39.73 55.71 16.43 46.09 45.40 94.47 190.10 43.06 14.93 96.89 100.75 23.84 157.08 15.25 3.58 56.95 83.58 29.88 16.48 15 ER1d ExonRegion 0 0.80 0.00 2.99 0.00 1.66 0.00 0.10 1.22 0.51 0.52 3.32 0.00 0.00 3.96 3.86 3.91 9.02 0.00 1.98 2.65 1.34 1.04 5.26 16 E2a_E4a KnownJunction 0 0.00 3.35 1.48 1.96 4.33 0.00 4.42 8.30 1.68 7.01 8.00 0.00 0.00 2.12 4.45 7.52 0.00 2.11 0.00 0.00 0.00 0.00 0.00 17 ER2a ExonRegion 0 0.07 1.68 1.23 1.55 2.21 0.00 1.92 2.15 0.00 3.32 3.73 0.00 0.00 2.35 0.70 11.89 0.46 1.91 0.22 0.15 0.00 0.93 0.00 18 ER3a ExonRegion 0 7.35 0.41 2.32 0.00 2.38 0.00 6.91 5.37 3.08 2.54 10.37 9.45 4.35 6.64 9.55 7.35 2.88 1.68 0.00 3.44 0.40 0.00 0.00 19 E3_Ab KnownBoundary 0 17.48 5.20 3.67 1.63 0.00 0.00 14.84 11.83 6.02 6.31 9.27 18.91 6.33 2.41 22.99 6.92 12.81 4.93 0.00 7.48 2.47 0.00 0.00 20 ER3b ExonRegion 0 13.76 3.16 4.51 0.00 0.00 0.00 8.12 10.83 3.64 3.80 9.87 10.14 8.64 8.93 10.69 3.44 10.51 3.55 0.00 2.30 3.31 0.00 0.00 21 E3a_E4a KnownJunction 0 8.74 3.35 3.67 0.00 0.00 0.00 8.70 11.87 4.69 3.14 7.37 12.30 0.00 15.07 9.27 4.36 14.21 2.57 0.00 3.26 5.75 0.00 0.00 22 ER4a ExonRegion 0 76.94 75.58 77.85 46.88 58.20 57.33 51.62 88.33 84.80 159.16 332.44 186.98 137.48 235.99 204.42 142.45 238.04 92.68 89.92 157.36 87.48 129.53 59.93 23 E4a_E5a KnownJunction 0 159.81 125.31 108.57 69.59 78.35 78.48 67.44 154.11 119.79 210.19 343.61 285.39 280.18 276.47 218.18 297.96 269.19 149.40 144.85 171.62 87.35 186.52 136.15 24 E4a_E6a KnownJunction 0 6.30 0.00 2.78 3.53 0.00 0.00 2.16 2.30 2.89 10.15 18.43 0.00 6.82 4.77 4.45 11.54 20.57 2.32 4.80 9.33 3.15 11.08 7.85 25 E4a_E7a NovelJunction 0 3.41 0.00 8.10 0.00 0.00 0.00 0.00 2.55 4.95 15.15 14.16 0.00 0.00 4.94 0.00 8.29 8.13 2.57 0.00 0.00 0.00 0.00 3.16 26 ER5a ExonRegion 0 75.78 135.57 122.37 84.44 99.08 90.58 92.62 168.26 140.50 225.52 380.52 398.64 195.06 296.38 263.84 279.70 368.85 117.89 144.35 176.47 77.76 213.28 114.31 27 E5_Da NovelBoundary 0 10.96 12.70 17.44 27.20 20.29 2.44 17.80 19.18 11.05 22.97 2.11 0.00 14.61 2.12 14.83 7.52 8.51 6.72 4.52 20.58 0.00 2.39 20.32 28 E5a_E6a KnownJunction 0 44.53 168.72 161.11 106.65 124.19 165.02 170.47 220.98 192.97 270.02 482.12 442.04 272.06 382.54 315.10 259.76 476.11 87.72 124.33 169.12 91.74 253.14 72.81 29 ER6a ExonRegion 0 129.05 213.47 168.14 120.42 195.05 160.38 190.72 249.82 209.02 320.08 643.81 486.73 297.19 409.58 355.83 269.94 480.95 116.85 184.35 236.44 87.43 314.45 93.10 30 E6a_E7a KnownJunction 0 297.16 303.56 166.08 111.61 209.00 231.29 227.97 293.39 223.09 329.35 659.22 858.43 555.16 470.07 501.39 331.11 508.37 132.57 263.16 273.25 70.30 359.13 122.84 31 ER7a ExonRegion 0 259.34 272.44 166.96 133.14 205.28 183.38 199.09 287.52 230.23 326.55 732.57 755.90 463.14 438.36 398.11 349.22 500.29 146.32 255.92 258.38 77.13 341.05 117.74 32 E7_Da KnownBoundary 0 381.70 327.24 189.50 165.01 281.41 194.60 246.87 308.14 268.86 336.42 784.88 680.32 500.78 437.58 449.10 402.12 527.72 133.44 246.97 270.24 80.87 362.99 113.45 33 ER7b ExonRegion 0 257.07 313.68 177.73 130.58 231.28 181.05 206.15 275.33 241.54 353.68 802.27 715.26 435.68 508.82 407.20 430.46 521.47 184.62 264.85 252.61 100.36 393.09 145.43 34 E7b_E8a KnownJunction 0 274.57 349.21 201.23 110.81 224.87 157.98 220.95 265.05 233.13 390.49 681.86 745.44 494.61 556.95 390.26 358.37 475.74 206.27 273.14 259.63 102.30 393.24 134.79 35 ER8a ExonRegion 0 299.30 383.97 222.97 128.48 250.84 196.04 260.53 293.16 229.47 392.91 707.41 628.14 442.58 605.71 453.15 447.25 549.14 240.77 264.52 288.29 165.76 367.87 188.99 36 E8_Da NovelBoundary 0 12.67 12.37 14.25 5.43 20.03 13.91 46.06 5.91 12.70 30.09 8.05 20.26 13.31 17.25 13.35 28.20 20.38 27.69 8.00 37.14 8.59 24.43 0.00 37 E8a_E9a KnownJunction 0 325.09 443.28 320.83 142.47 322.41 190.17 231.59 322.68 241.95 381.82 728.61 521.72 592.98 611.58 600.41 377.34 468.63 211.74 231.91 260.72 176.93 434.76 225.10 38 I8 Intron 0 10.20 18.96 9.02 7.93 22.18 9.13 22.63 12.93 13.42 19.34 12.94 13.79 14.19 13.11 10.98 19.30 16.83 17.66 11.42 31.87 7.64 10.96 11.00 39 I8_AR1 ActiveIntronRegion 0 13.63 18.58 4.84 11.46 19.67 2.88 24.81 10.38 16.14 18.97 6.25 14.56 5.74 10.99 7.70 14.42 18.27 14.53 8.55 15.71 2.85 11.26 7.33 40 I8_SR1 SilentIntronRegion 0 8.94 14.07 8.54 5.59 20.61 8.33 20.42 10.12 11.12 20.89 14.74 11.24 14.94 12.54 11.00 19.44 17.63 20.17 11.99 34.71 8.27 10.40 12.93 41 I8_AR2 ActiveIntronRegion 0 8.82 16.27 2.86 1.36 18.73 11.00 9.93 0.00 4.32 2.68 19.65 7.22 10.94 15.43 24.66 28.73 11.00 11.09 7.43 46.45 9.92 6.25 22.02 42 I8_AR5 ActiveIntronRegion 0 12.55 34.88 14.39 13.39 29.20 16.43 29.93 24.74 19.88 17.11 12.81 22.37 19.42 16.86 13.16 22.70 14.90 13.73 12.62 36.06 9.79 13.74 8.10 43 I8 Intron 0 30.42 66.48 31.53 17.45 56.52 22.39 74.22 39.31 23.21 49.97 18.78 32.28 44.32 19.31 17.63 15.28 23.59 13.16 6.91 39.82 5.83 25.44 10.61 44 I8_AR1 ActiveIntronRegion 0 13.80 30.41 17.51 14.02 20.50 14.77 38.55 37.52 17.64 28.16 22.95 13.67 21.16 19.29 11.58 33.05 25.32 26.02 12.17 43.24 23.63 15.98 19.12 45 I8_SR1 SilentIntronRegion 0 37.78 75.21 38.57 19.59 71.23 25.03 88.17 42.72 26.17 60.60 18.83 39.40 50.81 20.10 19.42 10.33 24.58 10.94 6.17 41.23 0.94 28.13 8.84 46 I8_AR2 ActiveIntronRegion 0 15.81 83.98 13.71 10.56 32.82 20.89 55.50 20.98 15.34 24.35 10.33 23.41 49.61 14.57 18.50 12.49 14.03 1.91 1.14 24.30 2.38 27.57 5.28 47 E9_Aa NovelBoundary 0 31.04 101.10 82.32 33.43 86.76 47.42 76.84 78.33 19.07 69.06 30.32 36.76 83.44 16.72 33.75 12.99 17.58 12.44 9.60 95.17 2.47 23.33 8.11 48 ER9a ExonRegion 0 750.24 976.91 211.24 130.38 310.24 156.27 265.70 281.32 186.08 354.23 412.11 602.59 540.54 402.92 424.80 301.98 315.89 118.53 192.01 218.91 96.34 305.09 129.06 49 E9_Da KnownBoundary 0 47.12 53.35 37.99 58.57 141.77 110.73 187.87 82.89 86.46 156.63 89.60 220.87 182.29 58.10 33.75 43.32 71.81 28.69 28.24 90.95 2.53 100.42 41.66 50 ER9b ExonRegion 1 110.95 103.97 103.28 84.25 148.59 66.05 137.23 139.88 99.15 170.47 49.00 138.99 103.13 58.77 53.13 39.16 45.21 24.81 44.37 83.68 6.79 58.96 19.82 51 ER9c ExonRegion 0 2.12 0.00 0.00 1.36 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00