Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 WDR34 Gene 0 43.61 54.21 113.80 14.88 36.74 60.88 82.80 96.10 42.47 122.91 114.71 24.25 23.52 224.94 206.98 144.48 119.66 227.12 159.02 144.68 55.58 43.34 38.36 2 372715 Transcript 0 2.33 2.08 3.90 0.47 1.89 2.99 3.61 1.96 0.43 1.11 4.13 0.00 2.32 11.79 26.76 9.32 14.50 2.55 5.44 1.60 6.36 1.92 3.17 3 451652 Transcript 0 2.92 1.45 4.67 0.00 5.10 5.50 6.94 4.77 3.53 8.90 1.93 0.00 0.00 25.44 33.02 6.93 19.18 31.50 5.01 16.82 12.49 0.00 13.42 4 456992 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 419989 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 480613 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 473486 Transcript 0 23.72 34.74 49.72 7.23 11.89 34.76 61.07 44.84 24.50 65.58 75.81 9.42 6.92 105.94 93.42 66.98 67.93 127.69 68.59 76.98 27.24 19.61 20.90 8 483181 Transcript 0 9.52 5.80 10.15 3.33 6.47 5.78 11.42 9.66 4.70 10.59 8.03 0.11 0.78 32.57 23.04 19.11 15.78 30.47 11.88 10.10 6.52 2.91 7.78 9 IG27 Intergenic 0 8.83 0.08 3.49 0.85 18.02 0.49 3.75 1.48 0.42 0.46 1.92 9.27 14.18 6.40 22.68 22.63 17.30 0.91 0.97 1.14 3.54 0.80 3.37 10 IG27_SR1 SilentIntergenicRegion 0 9.98 0.00 2.39 0.53 26.03 0.71 4.46 1.61 0.24 0.12 1.25 7.35 11.71 5.80 19.36 22.37 14.76 0.89 1.24 1.24 3.64 0.40 3.10 11 IG27_AR2 ActiveIntergenicRegion 0 7.46 0.22 5.39 1.38 7.03 0.19 2.81 1.46 0.64 0.96 2.67 13.50 20.14 7.84 27.65 24.63 21.70 0.98 0.68 1.13 2.61 1.55 4.16 12 IG27_AR1 ActiveIntergenicRegion 0 5.19 0.00 2.83 0.99 2.20 0.00 2.14 0.00 1.12 0.81 4.65 1.19 0.00 3.14 27.00 11.22 16.08 0.72 0.00 0.00 9.38 0.00 0.76 13 ER1a ExonRegion 0 2.33 2.08 3.90 0.47 1.89 2.99 3.61 1.96 0.43 1.11 4.13 0.00 2.32 11.79 26.76 9.32 14.50 2.55 5.44 1.60 6.36 1.92 3.17 14 E1_Ab KnownBoundary 0 10.67 6.64 2.66 1.86 4.33 5.45 8.88 2.55 0.00 0.00 10.37 0.00 0.00 24.55 11.25 12.05 9.54 6.51 4.80 3.07 17.61 0.00 0.00 15 E1_Ac KnownBoundary 0 0.00 0.00 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.83 0.00 0.00 0.00 2.07 0.00 0.00 0.00 0.00 0.00 16 E1_Ad KnownBoundary 0 81.13 55.85 23.62 1.76 36.08 76.60 89.87 27.56 18.49 43.19 52.64 0.00 0.00 28.55 69.60 105.27 58.63 125.52 163.96 61.81 22.05 24.55 44.47 17 ER1b ExonRegion 1 39.76 31.81 17.33 2.82 26.76 50.04 54.66 15.19 10.85 23.84 43.08 0.00 4.69 49.54 79.78 75.79 72.38 36.30 112.40 37.39 26.44 20.24 35.45 18 ER1c ExonRegion 1 83.07 58.97 28.18 8.18 42.14 84.81 134.38 15.99 13.59 42.15 86.98 0.00 4.69 72.27 174.08 121.11 105.63 56.36 215.01 70.21 45.18 33.86 56.53 19 ER1d ExonRegion 1 57.21 49.24 49.76 8.42 29.49 91.81 120.35 24.72 16.54 70.71 79.50 2.04 6.43 100.31 148.85 90.48 90.87 61.44 160.70 91.43 36.20 28.13 43.23 20 E1a_E2a KnownJunction 1 22.08 5.92 76.19 7.26 7.13 21.58 12.50 54.01 34.11 96.00 114.82 6.30 14.28 64.22 27.20 24.10 109.86 60.19 36.99 136.78 43.80 15.31 0.00 21 ER2a ExonRegion 0 23.36 45.38 163.50 23.92 46.76 106.72 128.22 140.98 58.65 188.13 193.79 19.47 25.84 300.85 306.08 228.23 162.12 433.21 262.43 263.16 88.51 74.20 66.53 22 E2a_E3b KnownJunction 1 74.90 175.43 222.97 32.36 55.60 146.62 289.00 186.23 97.60 266.87 296.65 11.55 20.13 348.93 334.01 272.41 241.33 469.05 274.08 282.32 95.82 71.09 83.31 23 E2a_E4a KnownJunction 0 0.00 0.00 2.90 0.00 0.00 5.17 7.68 3.98 3.59 5.94 2.21 0.00 6.82 2.83 0.00 0.00 0.00 8.25 0.00 9.33 3.15 0.00 0.00 24 ER3a ExonRegion 0 31.75 67.11 93.74 12.27 20.07 63.27 115.18 82.10 42.61 122.15 139.17 15.15 11.73 174.59 158.12 114.43 113.88 234.66 129.01 142.55 49.58 35.42 36.71 25 ER3b ExonRegion 0 55.38 81.29 180.10 26.73 32.26 79.56 101.57 153.06 96.23 221.96 248.40 50.60 29.78 368.82 281.26 233.84 214.47 391.69 204.74 269.02 106.16 70.78 52.83 26 E3a_E4a KnownJunction 0 95.94 38.02 212.59 36.03 33.62 85.29 92.65 152.96 102.52 196.76 160.30 42.31 13.64 309.67 293.10 248.82 186.35 480.98 282.64 285.77 104.03 67.85 54.29 27 ER4a ExonRegion 0 71.12 46.73 191.38 24.63 33.85 76.83 80.73 134.56 70.27 217.76 192.18 38.58 42.45 401.45 337.50 236.47 187.17 453.95 259.73 258.01 86.10 62.29 64.96 28 E4_Da KnownBoundary 0 3.33 5.33 9.34 1.53 12.73 11.19 14.00 18.77 3.01 12.84 7.95 0.00 0.00 28.78 22.25 4.02 31.70 38.47 9.32 7.99 0.00 0.00 4.35 29 E4a_E4c KnownJunction 0 64.68 37.76 156.47 22.04 45.33 85.35 110.50 99.65 42.82 147.18 112.13 18.16 13.64 368.24 271.59 192.43 138.29 339.54 136.29 191.56 66.10 40.11 62.66 30 ER4b ExonRegion 0 4.28 5.25 10.03 1.58 4.65 10.25 11.54 12.14 4.97 13.38 10.73 2.90 1.00 29.65 24.15 22.16 22.79 38.06 13.92 12.74 12.33 2.16 3.56 31 E4_Db KnownBoundary 0 3.70 0.00 2.57 0.00 0.00 7.55 10.11 2.46 1.19 5.78 0.00 0.00 0.00 7.06 19.28 4.36 12.81 29.27 0.00 15.47 8.90 0.00 8.71 32 E4_Ab KnownBoundary 0 0.00 2.89 3.08 0.00 8.32 2.50 4.28 11.30 5.24 6.50 2.68 0.00 0.00 32.67 6.30 4.36 18.33 16.25 4.61 9.20 11.18 2.94 12.21 33 ER4c ExonRegion 0 2.92 1.45 4.67 0.00 5.10 5.50 6.94 4.77 3.53 8.90 1.93 0.00 0.00 25.44 33.02 6.93 19.18 31.50 5.01 16.82 12.49 0.00 13.42 34 ER4d ExonRegion 0 5.61 3.94 6.96 2.49 2.27 7.41 9.51 5.07 7.12 10.97 3.75 2.51 0.68 30.47 18.31 17.42 15.89 25.00 11.49 6.56 3.98 1.35 4.78 35 E4_Dc KnownBoundary 0 3.63 2.70 16.23 6.16 8.15 9.20 11.75 11.38 8.01 11.26 4.32 0.00 6.82 45.03 10.51 11.36 29.27 39.80 7.72 15.85 2.66 2.45 3.76 36 ER4e ExonRegion 0 9.52 5.80 10.15 3.33 6.47 5.78 11.42 9.66 4.70 10.59 8.03 0.11 0.78 32.57 23.04 19.11 15.78 30.47 11.88 10.10 6.52 2.91 7.78 37 E4_Ac KnownBoundary 0 26.15 21.58 17.27 5.23 7.64 5.28 11.26 25.84 5.84 6.37 12.00 0.00 6.01 40.26 14.71 32.30 34.60 40.91 12.05 14.25 8.96 3.06 7.60 38 ER4f ExonRegion 0 99.20 78.23 168.99 27.07 37.78 96.89 131.50 128.43 51.19 183.15 175.31 37.97 23.11 389.45 343.94 240.12 214.10 422.80 229.00 271.89 96.30 54.13 59.95 39 E4_Dd KnownBoundary 0 7.04 3.29 1.60 0.00 6.54 5.11 8.57 4.48 4.22 5.56 9.95 0.00 12.50 26.02 28.56 7.26 11.03 16.29 8.09 23.46 3.15 0.00 4.27 40 E4d_E5a KnownJunction 0 43.27 96.76 167.06 25.67 36.84 70.58 163.80 137.15 48.58 193.81 93.13 18.16 25.81 223.91 285.31 113.90 146.70 201.34 133.18 246.91 65.92 48.99 38.33 41 ER4g ExonRegion 0 15.69 2.37 5.69 2.19 3.71 6.25 6.96 7.58 6.40 9.01 12.45 3.68 2.11 37.28 28.73 19.53 21.98 20.72 8.17 11.41 4.89 3.81 5.09 42 E4_De NovelBoundary 0 36.52 8.42 18.80 0.00 4.33 5.17 12.85 12.16 9.03 8.06 2.63 0.00 0.00 36.44 26.70 48.11 30.20 36.31 4.71 14.32 9.45 5.57 6.91 43 E5_Aa NovelBoundary 0 24.82 8.49 23.48 6.43 4.33 0.00 21.55 2.55 6.86 15.07 10.00 0.00 0.00 21.43 19.41 27.17 35.62 20.27 21.74 5.94 12.05 5.20 0.00 44 ER5a ExonRegion 0 41.89 71.25 154.20 14.50 33.66 78.22 111.23 116.08 53.75 163.02 125.52 27.37 24.78 294.53 299.29 121.64 166.43 172.05 91.55 190.75 71.99 54.30 29.48 45 E5_Da KnownBoundary 0 86.68 107.48 162.83 28.23 57.81 83.87 110.27 165.04 74.16 186.74 173.36 67.37 39.28 393.26 344.52 234.30 190.37 518.46 111.53 247.04 78.95 42.13 51.30 46 ER5b ExonRegion 0 64.30 92.98 201.00 24.85 66.80 70.95 130.43 179.48 76.31 236.28 185.67 51.36 58.11 406.18 412.24 360.31 183.75 619.55 357.68 244.36 100.23 99.22 63.59 47 E5b_E6a KnownJunction 0 120.76 113.34 270.10 24.14 66.55 91.48 151.17 236.22 103.88 254.92 263.17 41.86 40.74 513.86 428.21 323.68 215.15 580.43 475.68 286.48 89.21 164.53 75.38 48 ER6a ExonRegion 0 93.98 122.08 222.36 23.87 67.73 120.43 175.93 193.05 86.51 249.88 205.33 41.88 42.75 430.91 379.62 280.45 207.23 438.01 319.06 241.77 100.11 99.07 68.78 49 E6_Da NovelBoundary 0 19.56 29.27 81.87 8.86 25.38 17.09 41.42 81.08 27.98 99.28 49.01 11.25 24.19 138.15 81.34 77.76 42.17 103.55 127.25 85.59 14.09 32.15 28.51 50 E6b_E7a KnownJunction 0 99.87 241.80 286.09 35.59 210.61 148.72 210.66 248.74 98.52 280.63 179.78 65.57 27.11 760.32 457.51 368.79 204.77 502.79 840.78 262.44 83.46 110.22 157.58 51 ER6b ExonRegion 0 84.31 170.48 238.74 33.16 155.19 97.80 154.68 209.14 91.81 250.03 152.38 57.73 39.08 689.44 438.57 295.23 162.84 446.85 631.76 242.20 85.94 88.20 125.79 52 ER7a ExonRegion 0 98.30 143.92 257.97 30.12 111.35 108.84 168.41 237.57 86.05 257.80 233.78 45.65 59.96 458.94 380.01 260.64 243.01 441.38 323.58 268.62 102.01 74.12 68.53 53 E7a_E8a KnownJunction 0 148.99 187.80 479.40 63.43 190.75 234.98 360.41 406.59 121.76 394.71 275.54 80.88 53.08 505.56 535.26 379.81 272.00 616.54 519.17 395.46 132.70 92.95 90.14 54 ER8a ExonRegion 0 48.82 88.66 156.27 18.90 62.56 69.84 96.67 137.47 51.07 130.96 131.40 50.61 41.98 268.51 266.39 157.84 144.23 155.30 185.84 164.03 64.98 50.37 43.38