Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ENG Gene 0 169.98 18.53 314.98 152.38 124.29 65.21 43.19 210.93 243.55 126.38 1.86 24.59 21.52 81.79 14.82 26.72 12.93 11.21 8.32 5.59 618.01 505.84 456.69 2 373203 Transcript 0 142.51 12.97 156.19 75.59 51.26 29.00 12.49 106.45 110.09 65.09 0.00 22.26 15.47 33.70 10.23 13.93 3.61 0.83 5.42 0.28 279.41 229.58 325.04 3 344849 Transcript 0 34.08 3.15 31.05 14.32 12.66 12.42 7.64 21.59 21.75 23.64 2.27 0.41 4.52 24.20 7.52 10.85 13.49 23.08 14.49 8.23 23.29 15.10 21.01 4 462196 Transcript 0 2.79 0.24 0.65 0.98 7.64 0.25 1.16 2.16 3.27 1.43 0.00 0.90 0.00 3.71 0.00 0.00 0.40 0.33 0.00 0.25 1.60 1.00 2.45 5 480266 Transcript 0 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.24 6 486329 Transcript 0 42.77 8.78 48.86 25.23 28.10 19.23 13.35 28.83 20.25 27.21 5.84 9.98 9.93 23.55 13.15 20.93 9.82 26.80 21.92 14.89 14.30 9.67 18.30 7 ER1a ExonRegion 0 21.64 0.54 6.19 0.98 3.89 10.46 2.72 10.36 10.77 6.83 0.00 0.00 0.16 11.40 2.88 7.54 2.78 0.00 0.00 0.00 117.07 75.78 136.44 8 E1_Ab KnownBoundary 0 106.61 6.05 44.20 7.46 39.13 43.04 11.88 40.83 50.98 24.61 0.00 6.00 0.00 9.24 0.00 7.86 0.00 0.00 0.00 0.00 175.63 138.69 188.74 9 ER1b ExonRegion 0 43.50 5.41 70.09 21.81 29.08 27.95 14.15 51.90 68.80 41.86 0.00 4.90 7.81 37.45 6.25 6.62 2.07 0.00 0.00 0.00 319.69 168.54 167.80 10 E1a_E2a KnownJunction 0 47.56 34.66 214.75 59.13 149.58 116.30 44.91 142.81 221.61 89.13 0.00 22.51 7.95 83.35 14.71 12.73 4.21 0.00 0.00 0.00 562.48 394.65 302.36 11 ER2a ExonRegion 0 81.67 16.63 283.90 127.42 103.00 76.32 38.21 213.20 302.16 141.02 0.00 24.10 13.27 110.23 13.65 19.91 9.01 0.00 0.00 0.00 837.00 689.47 612.06 12 E2a_E3a KnownJunction 1 70.61 5.53 360.57 155.52 85.23 34.24 28.18 242.54 358.39 153.41 0.00 55.82 25.81 115.78 4.45 19.05 8.98 0.00 0.00 0.00 831.59 691.88 589.43 13 E3_Ab NovelBoundary 0 91.35 14.08 326.84 131.29 78.52 33.16 29.54 243.86 330.93 142.66 0.00 45.61 13.31 83.88 30.04 18.88 13.18 2.53 0.00 0.00 900.78 483.87 544.45 14 ER3a ExonRegion 0 55.56 8.98 341.37 139.58 69.68 26.28 27.20 248.97 364.00 151.44 0.00 45.64 16.22 109.97 20.55 18.45 12.79 0.00 0.00 0.00 983.50 611.43 597.73 15 ER3b ExonRegion 0 122.27 19.08 373.97 193.46 112.88 69.79 45.41 306.38 422.57 193.28 0.00 30.53 14.63 126.56 12.42 28.15 12.70 0.00 0.57 0.00 1081.70 870.07 765.41 16 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 4.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 E3a_E5a KnownJunction 0 200.92 9.01 366.96 221.48 234.64 134.35 66.33 322.60 427.28 196.66 0.00 14.25 20.78 134.79 14.09 29.56 13.28 0.00 4.80 0.00 1143.75 930.87 950.52 18 ER4a ExonRegion 0 8.38 0.73 1.96 2.93 10.01 0.74 1.24 6.48 6.53 4.30 0.00 2.71 0.00 3.29 0.00 0.00 1.19 0.99 0.00 0.76 4.80 2.99 7.34 19 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 12.90 0.00 2.25 0.00 1.48 0.00 0.00 0.00 0.00 2.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 ER5a ExonRegion 0 158.49 25.63 281.78 137.15 147.87 115.53 50.61 238.25 314.67 140.97 0.00 22.50 18.07 96.83 11.66 28.39 13.12 0.86 2.58 0.00 880.94 665.03 646.62 21 E5a_E6a KnownJunction 1 157.58 17.43 212.47 88.10 89.90 119.93 53.70 94.02 209.31 90.98 0.00 12.45 13.31 125.79 4.45 15.81 3.55 0.00 0.00 0.00 538.64 530.40 532.75 22 ER6a ExonRegion 0 168.82 14.35 138.14 59.59 122.71 69.58 42.53 92.98 143.60 74.13 0.00 16.84 14.00 85.81 8.06 23.90 8.21 0.00 1.95 1.51 636.63 464.45 358.27 23 E6_Da KnownBoundary 0 137.28 15.85 122.62 43.92 106.45 42.99 26.72 103.14 136.66 73.90 0.00 13.05 6.49 33.32 4.45 20.25 8.70 0.00 0.00 0.00 462.96 325.52 211.79 24 ER6b ExonRegion 0 89.86 24.49 163.78 60.92 91.77 37.42 35.92 122.48 153.81 72.82 0.00 16.53 15.92 85.53 6.94 19.95 7.13 0.00 5.39 0.00 554.96 473.91 418.88 25 E6b_E7a KnownJunction 0 122.24 35.32 309.92 128.42 213.58 43.16 79.58 236.46 296.00 128.56 0.00 30.31 0.00 64.75 8.90 15.47 3.74 0.00 0.00 0.00 732.00 583.00 504.58 26 ER7a ExonRegion 0 137.55 22.20 310.87 160.10 159.15 95.05 48.16 271.02 312.60 128.65 0.00 34.68 37.67 99.40 8.83 28.65 15.52 0.00 0.00 3.55 763.91 628.23 592.39 27 E7_Ab KnownBoundary 0 171.14 30.92 427.51 264.77 218.42 144.58 67.61 396.20 344.50 163.59 0.00 42.46 93.50 83.82 14.96 20.08 12.44 2.57 4.14 11.38 742.19 668.61 1059.70 28 ER7b ExonRegion 1 212.36 19.72 495.20 294.38 256.55 138.37 61.18 426.40 409.23 184.10 0.00 42.38 59.26 141.50 9.23 33.95 10.80 0.00 0.00 3.03 891.77 1072.89 1159.35 29 E7a_E8a KnownJunction 1 355.10 14.34 654.35 385.70 366.04 165.70 81.92 520.53 514.87 224.89 0.00 37.36 27.11 208.61 8.90 51.78 10.29 0.00 0.00 0.00 1056.83 1560.54 1397.31 30 ER8a ExonRegion 0 314.67 30.42 571.70 315.64 249.44 116.69 68.20 394.42 523.31 229.67 0.00 50.49 62.69 156.26 13.89 40.01 22.33 0.00 1.86 0.62 1302.93 1174.47 942.88 31 E8a_E9a KnownJunction 1 570.99 65.32 788.32 448.96 401.10 127.65 126.26 513.38 652.34 271.44 0.00 37.06 75.00 158.87 8.90 41.44 26.65 0.00 0.00 0.00 1710.24 1665.00 1600.56 32 ER9a ExonRegion 1 318.28 51.23 638.01 357.47 281.65 99.24 84.23 443.35 517.81 225.31 0.00 50.10 71.02 170.73 13.33 38.85 25.15 0.26 0.00 0.00 1367.56 1195.59 1128.09 33 E9_Ab KnownBoundary 1 256.42 43.81 540.64 284.85 298.05 108.23 68.19 428.73 441.14 200.77 0.00 37.06 53.41 181.94 11.37 38.71 25.25 0.00 0.00 0.00 1045.15 864.49 630.83 34 ER9b ExonRegion 0 252.16 32.40 549.65 297.07 349.04 129.87 79.16 424.89 467.18 212.59 0.00 36.95 56.84 154.03 15.83 41.85 20.66 2.34 0.09 0.08 1177.63 1094.61 881.98 35 E9a_E10a KnownJunction 0 416.81 39.14 597.61 379.41 515.20 165.76 104.00 441.71 483.42 207.99 0.00 76.83 48.05 190.77 17.80 66.56 20.48 2.03 0.00 0.00 1262.30 1305.13 1244.34 36 Ix Intron 0 30.31 13.50 14.00 14.19 30.83 6.41 19.42 10.79 10.92 11.34 1.35 6.49 7.32 4.77 3.28 11.42 2.31 0.00 7.79 8.18 0.77 8.01 9.23 37 Ix_SR1 SilentIntronRegion 0 30.31 13.50 14.00 14.19 30.83 6.41 19.42 10.79 10.92 11.34 1.35 6.49 7.32 4.77 3.28 11.42 2.31 0.00 7.79 8.18 0.77 8.01 9.23 38 Ix Intron 0 26.59 6.91 25.64 14.41 16.61 11.39 9.20 19.04 12.24 9.10 3.14 3.39 1.71 13.20 8.43 10.54 4.88 7.87 20.25 8.49 6.19 6.15 9.98 39 Ix_SR1 SilentIntronRegion 0 26.67 6.93 25.72 14.45 16.65 11.42 9.23 19.09 12.28 9.12 3.15 3.40 1.72 13.24 8.45 10.58 4.89 7.90 20.31 8.52 6.21 6.17 10.01 40 E10_Aa NovelBoundary 0 34.01 8.95 45.62 13.68 27.84 5.28 4.15 18.61 1.30 24.93 4.79 0.00 0.00 9.65 5.56 4.36 16.74 30.30 0.00 8.82 26.50 5.94 16.30 41 ER10a ExonRegion 0 311.92 33.43 597.14 342.68 353.53 121.32 74.85 416.72 411.18 211.53 3.87 78.20 66.25 158.61 26.66 54.33 14.24 9.70 9.26 8.91 1165.49 1110.52 1085.73 42 E10_Da KnownBoundary 0 401.77 48.61 703.76 401.58 293.21 103.24 81.75 435.51 422.48 229.83 12.00 63.47 88.31 138.62 32.26 50.41 15.61 28.27 17.04 24.10 1019.76 1001.41 1014.37 43 E10a_E12b KnownJunction 0 2.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.24 44 ER10b ExonRegion 0 266.58 44.89 669.54 348.83 205.50 131.91 77.76 469.41 485.73 239.67 6.27 52.97 63.23 159.19 28.08 52.85 27.53 29.15 27.80 13.63 1070.96 834.47 716.54 45 E10_Db NovelBoundary 0 38.75 6.12 70.02 38.32 53.57 10.33 3.93 49.74 31.63 37.55 11.42 6.30 0.00 29.73 0.00 29.99 13.00 49.50 27.39 35.15 32.80 22.29 20.49 46 E10b_E11a KnownJunction 1 239.30 15.13 576.03 271.09 185.99 90.97 56.13 373.08 471.03 164.56 0.00 12.60 62.17 85.47 0.00 20.51 9.44 0.00 0.00 0.00 726.63 708.66 504.92 47 Ix_SR1 SilentIntronRegion 0 26.18 6.36 29.20 14.30 18.59 13.99 9.60 18.89 12.21 15.98 9.22 4.47 7.70 13.22 5.41 10.29 6.53 16.24 3.79 8.33 9.00 7.13 7.14 48 E11_Aa NovelBoundary 0 24.15 9.01 60.67 28.90 11.71 8.12 11.97 38.40 20.89 34.92 9.63 0.00 0.00 11.48 4.45 12.39 8.04 19.48 0.00 15.60 3.15 5.88 7.85 49 ER11a ExonRegion 0 260.66 15.54 601.59 285.51 199.51 84.59 64.67 402.29 479.48 209.77 0.64 45.18 46.18 90.41 23.51 19.59 15.15 10.38 7.68 11.89 839.50 681.10 487.33 50 E11_Da KnownBoundary 0 69.64 11.84 44.41 11.12 49.92 45.20 23.72 33.06 13.89 14.05 2.21 7.50 6.82 4.65 8.90 3.25 12.53 16.33 8.28 23.20 16.80 14.63 8.02 51 E11a_E12a KnownJunction 0 451.19 15.98 548.59 254.85 300.59 71.89 83.69 334.22 373.87 191.69 0.00 56.42 33.28 96.83 28.56 16.75 12.72 4.85 8.75 0.00 1092.78 832.10 586.27 52 ER11b ExonRegion 0 42.77 8.78 48.86 25.23 28.10 19.23 13.35 28.83 20.25 27.21 5.84 9.98 9.93 23.55 13.15 20.93 9.82 26.80 21.92 14.89 14.30 9.67 18.30 53 E11_Db NovelBoundary 0 116.54 85.45 52.69 68.36 65.28 89.32 136.42 71.59 48.52 53.03 40.48 80.43 47.72 43.03 11.13 105.10 50.30 51.65 127.63 54.39 42.32 150.82 142.47 54 Ix Intron 0 22.83 2.99 8.06 0.00 3.94 5.40 7.14 5.05 7.22 5.03 0.00 3.50 3.79 9.51 10.63 7.29 1.62 5.40 9.37 6.26 10.81 10.22 12.96 55 Ix_AR1 ActiveIntronRegion 0 23.28 3.05 8.22 0.00 4.01 5.50 7.28 5.15 7.36 5.12 0.00 3.57 3.86 9.70 10.81 7.43 1.65 5.51 9.56 6.38 11.00 10.42 13.21 56 ER12a ExonRegion 0 298.67 33.77 752.24 356.66 176.10 82.56 56.04 417.04 479.40 217.57 0.00 36.05 25.30 88.50 33.94 26.40 25.33 3.78 5.63 6.73 987.16 707.23 589.10 57 E12_Ab KnownBoundary 0 562.99 72.36 975.48 495.34 285.40 169.79 77.37 483.93 587.47 234.18 0.00 54.62 70.29 154.51 34.12 51.01 37.12 8.58 9.60 10.80 1149.37 1017.33 1085.82 58 ER12b ExonRegion 0 339.59 38.03 747.11 376.14 192.22 105.27 62.82 395.61 512.26 230.16 0.00 72.26 57.80 142.72 28.39 57.35 15.26 8.51 8.39 4.89 1069.13 1071.77 997.66 59 E12_Da NovelBoundary 0 3.11 0.00 16.94 8.19 4.07 0.00 3.31 8.13 3.36 5.21 2.05 5.70 0.00 0.00 4.45 4.36 0.00 5.14 14.12 2.36 5.07 2.88 11.95 60 E12a_E13a KnownJunction 0 392.44 18.48 758.87 439.87 308.57 58.15 112.35 486.65 572.48 252.58 0.00 87.48 28.24 181.88 19.53 44.01 21.51 3.48 0.00 0.00 1357.56 1160.68 978.18 61 ER13a ExonRegion 0 236.94 19.19 450.87 216.78 106.56 71.96 53.39 285.83 343.34 160.43 0.36 32.97 17.43 80.29 17.99 26.32 12.22 1.26 2.27 0.00 682.25 671.01 635.66 62 E13a_E14a KnownJunction 0 339.91 19.47 571.92 276.39 210.02 118.45 88.10 404.50 409.37 242.19 0.00 41.41 19.64 113.31 9.27 20.17 4.30 0.00 8.38 0.00 1125.40 800.08 857.98 63 Ix Intron 0 16.97 7.25 27.65 10.86 12.50 8.58 5.60 21.80 11.48 15.23 5.60 4.14 8.79 19.36 10.41 9.27 7.35 16.57 12.06 10.42 10.80 6.50 23.54 64 Ix_AR1 ActiveIntronRegion 0 17.03 7.28 27.78 10.90 12.56 8.61 5.63 21.89 11.53 15.29 5.61 4.16 8.82 19.45 10.46 9.31 7.38 16.65 12.11 10.47 10.83 6.52 23.65 65 Ix Intron 0 26.85 7.84 23.62 23.99 23.30 16.42 13.01 24.99 16.95 25.09 6.49 3.20 6.47 18.73 11.91 17.75 10.68 26.39 22.98 11.91 14.52 8.29 24.11 66 Ix_AR1 ActiveIntronRegion 0 26.91 7.86 23.68 24.05 23.36 16.46 13.04 25.05 16.99 25.14 6.51 3.21 6.49 18.77 11.94 17.79 10.70 26.45 23.04 11.94 14.56 8.31 24.17 67 E14_Aa NovelBoundary 0 61.27 9.87 45.39 30.30 36.25 77.06 21.24 41.73 23.96 39.59 2.05 0.00 0.00 44.21 10.51 15.98 7.67 32.67 35.67 16.55 5.99 0.00 35.60 68 ER14a ExonRegion 0 296.66 20.34 501.85 240.44 164.44 97.62 63.16 379.44 384.57 231.61 0.11 28.50 24.90 98.21 9.39 13.40 9.72 0.00 4.52 0.00 1009.70 810.68 784.94 69 E14_Da NovelBoundary 0 35.04 39.47 58.96 25.01 43.80 10.62 28.66 42.76 28.39 31.21 5.26 20.11 0.00 37.14 16.56 24.69 20.01 25.41 24.57 25.12 7.85 14.02 26.97 70 E14a_E15a KnownJunction 0 460.16 27.96 472.13 249.69 251.78 87.51 77.95 354.59 368.66 194.99 0.00 24.76 13.15 106.13 17.68 25.04 13.74 0.00 0.00 0.00 1023.77 1004.11 913.98 71 E15_Aa NovelBoundary 0 53.05 8.55 64.60 29.27 62.82 11.58 10.69 38.32 27.43 35.70 9.37 6.00 12.50 17.42 4.45 8.80 13.00 13.93 18.07 14.19 14.52 10.84 24.07 72 ER15a ExonRegion 0 307.77 27.10 455.79 213.92 154.06 81.45 55.07 318.63 351.13 207.71 4.34 46.73 37.86 114.68 27.76 43.78 25.22 28.47 14.72 9.43 939.65 709.22 687.73 73 E15_Da KnownBoundary 0 44.30 6.45 40.92 22.51 24.45 12.61 10.33 31.01 25.78 35.24 10.00 0.00 6.82 21.25 13.35 26.23 12.72 33.62 21.46 24.29 39.66 18.86 31.84 74 E15a_E15b KnownJunction 0 394.88 32.69 455.28 225.51 148.81 76.55 33.43 303.13 315.30 186.82 0.00 66.77 46.26 87.76 27.81 33.67 8.04 2.49 13.08 0.00 718.96 612.95 838.10 75 ER15b ExonRegion 0 34.08 3.15 31.05 14.32 12.66 12.42 7.64 21.59 21.75 23.64 2.27 0.41 4.52 24.20 7.52 10.85 13.49 23.08 14.49 8.23 23.29 15.10 21.01 76 E15_Ab KnownBoundary 0 26.82 2.63 22.09 3.20 14.26 7.61 3.71 6.45 10.19 19.18 0.00 0.00 6.82 11.83 0.00 3.50 0.00 10.24 15.15 5.24 17.30 4.96 10.67 77 ER15c ExonRegion 0 258.87 21.72 418.50 187.20 169.88 72.69 61.58 242.02 244.02 156.06 3.74 24.23 15.06 87.77 21.51 36.59 16.53 24.76 15.33 11.68 624.53 478.68 422.52 78 ER15d ExonRegion 0 11.01 5.69 7.11 0.27 1.07 0.00 1.32 5.88 4.20 1.61 0.00 0.00 0.00 1.95 0.00 0.59 0.00 0.00 3.19 0.85 2.20 0.00 0.59 79 IG1 Intergenic 0 20.34 12.76 34.05 15.94 14.70 15.47 7.53 19.20 22.38 22.46 6.45 6.44 4.87 22.43 13.69 17.49 11.01 37.67 18.12 16.69 11.67 2.86 14.40 80 IG1_AR1 ActiveIntergenicRegion 0 31.60 13.94 32.48 14.25 21.45 15.68 7.78 19.05 20.17 20.30 4.58 6.20 5.25 20.98 15.27 16.83 12.02 40.72 18.88 13.17 11.46 0.27 11.23 81 IG1_SR2 SilentIntergenicRegion 0 10.00 11.76 35.76 17.63 8.51 15.38 7.35 19.48 24.62 24.64 8.24 6.72 4.55 23.95 12.32 18.23 10.15 35.08 17.54 20.10 11.96 5.30 17.47