Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TMEFF1 Gene 0 62.16 805.71 243.62 253.94 311.80 530.27 406.78 394.74 359.53 361.50 3.26 6.29 2.76 2.00 1.94 1.24 2.69 180.58 118.86 399.72 34.29 56.57 22.83 2 334943 Transcript 0 2.05 9.14 0.58 4.92 3.79 7.16 0.04 14.21 20.75 21.45 1.67 0.00 0.00 4.28 1.60 2.52 9.70 27.71 6.86 16.95 24.12 16.97 24.07 3 374879 Transcript 0 12.05 92.10 59.65 45.01 55.46 184.42 87.98 85.40 92.19 106.66 0.00 0.00 4.67 0.00 0.00 0.00 0.09 143.79 56.42 206.03 36.98 4.93 2.86 4 ER1a ExonRegion 0 0.54 6.38 0.06 3.71 3.59 4.39 0.08 8.20 12.74 12.82 0.86 0.00 0.00 4.09 3.20 1.54 6.69 18.15 4.31 9.99 11.35 12.40 16.80 5 E1a_E3a KnownJunction 0 3.56 11.91 1.09 6.13 3.99 9.94 0.00 20.21 28.76 30.09 2.47 0.00 0.00 4.47 0.00 3.50 12.72 37.27 9.41 23.91 36.88 21.55 31.33 6 Ix Intron 0 4.16 19.03 7.18 6.26 11.53 4.88 10.56 16.03 8.42 8.36 5.86 10.58 6.13 6.21 2.81 2.37 4.74 7.23 7.79 17.88 15.82 32.03 34.98 7 Ix_AR1 ActiveIntronRegion 0 4.44 7.32 6.03 2.44 16.05 4.95 5.96 12.36 6.63 7.17 5.22 10.54 4.63 4.70 5.53 2.67 1.98 15.98 6.69 16.60 22.48 21.88 37.00 8 Ix_SR2 SilentIntronRegion 0 4.11 21.58 7.44 7.10 10.56 4.87 11.57 16.84 8.81 8.63 6.00 10.60 6.46 6.54 2.23 2.31 5.34 5.35 8.04 18.18 14.40 34.26 34.59 9 Ix Intron 0 12.54 20.27 12.39 8.77 15.42 5.94 16.65 19.62 11.36 12.85 7.62 13.65 8.13 7.19 2.73 4.16 5.88 11.64 10.04 21.89 16.62 52.48 34.67 10 Ix_SR1 SilentIntronRegion 0 0.00 9.43 2.12 0.00 7.75 5.29 7.67 4.48 3.20 0.99 12.32 4.13 0.00 5.83 1.19 3.44 3.83 1.60 3.69 13.56 14.05 21.73 15.32 11 Ix_AR1 ActiveIntronRegion 0 3.45 15.78 12.89 4.50 14.05 2.99 10.81 15.21 10.93 10.82 5.57 12.22 10.90 6.36 0.80 4.17 4.52 8.97 6.88 23.29 7.94 59.94 25.91 12 Ix_SR2 SilentIntronRegion 0 4.49 34.55 13.43 6.65 10.57 2.87 10.75 18.77 10.65 11.49 6.62 10.12 7.76 7.84 0.46 5.05 3.15 9.52 11.65 21.96 18.33 55.46 33.54 13 Ix_AR2 ActiveIntronRegion 0 6.37 18.89 9.37 4.37 11.63 3.37 15.94 12.36 8.86 11.01 3.23 17.89 9.18 5.40 1.43 2.48 4.97 4.99 5.86 16.37 11.78 49.79 22.59 14 Ix_SR3 SilentIntronRegion 0 9.19 22.26 15.21 10.47 17.61 7.04 12.47 25.71 14.21 17.18 5.69 15.76 6.04 11.04 4.18 7.83 2.27 22.65 14.75 24.31 15.93 55.27 45.10 15 Ix_AR3 ActiveIntronRegion 0 14.85 24.87 11.61 11.15 11.94 4.86 14.05 19.99 12.75 19.82 6.81 16.43 7.71 7.94 2.46 3.96 4.99 16.55 12.11 22.44 19.98 58.23 37.49 16 Ix_SR4 SilentIntronRegion 0 20.57 16.71 13.60 11.73 20.43 9.08 23.62 23.90 12.35 12.38 10.12 14.15 8.26 7.25 4.60 4.07 8.62 12.56 10.96 23.33 19.81 50.66 41.01 17 I1_SR1 SilentIntronRegion 0 4.29 24.25 13.85 19.56 42.38 51.86 39.47 37.42 30.44 35.86 5.23 8.14 4.47 3.76 3.05 1.42 4.43 22.07 24.50 33.15 13.59 40.53 48.09 18 I1_AR2 ActiveIntronRegion 0 4.61 37.22 16.67 24.47 28.21 35.09 38.50 47.08 39.88 38.55 7.29 6.40 4.70 3.45 1.28 2.21 3.29 11.75 23.38 41.86 7.14 43.66 36.58 19 I1_SR2 SilentIntronRegion 0 6.17 23.28 18.08 26.18 34.29 46.96 40.64 34.63 27.12 34.50 5.47 7.66 3.25 6.02 2.24 2.41 5.90 23.78 24.72 32.80 13.84 31.76 51.66 20 I1_AR3 ActiveIntronRegion 0 20.21 58.25 32.38 52.42 65.07 60.08 44.79 84.05 54.28 71.20 10.63 15.53 0.17 7.90 4.80 4.54 5.20 60.89 53.06 57.98 29.28 54.73 61.11 21 I1_SR3 SilentIntronRegion 0 55.01 89.56 39.09 45.12 79.10 67.07 70.97 98.82 45.81 70.53 6.07 14.39 5.91 6.07 3.38 6.23 5.50 29.30 41.14 40.55 17.29 61.50 49.44 22 I1_AR4 ActiveIntronRegion 0 70.27 78.57 50.81 64.41 81.07 76.59 58.18 122.29 64.12 79.13 7.75 12.26 2.79 4.38 8.93 6.43 5.55 44.66 68.94 50.59 33.82 82.72 76.56 23 ER2a ExonRegion 0 3.75 34.58 12.60 9.69 16.77 78.27 29.06 19.64 22.56 35.34 0.00 0.00 0.54 0.00 0.00 0.00 0.27 65.29 20.33 58.97 22.92 1.56 0.98 24 E2a_E3a KnownJunction 0 31.34 198.52 147.95 117.83 135.57 459.85 216.35 212.80 239.49 268.57 0.00 0.00 13.47 0.00 0.00 0.00 0.00 366.07 148.15 547.96 88.03 11.14 7.60 25 ER3a ExonRegion 0 54.34 231.42 171.99 159.54 163.68 444.95 280.74 285.43 333.21 374.25 4.78 1.26 7.76 5.09 2.95 2.59 6.15 444.62 207.92 482.38 80.38 49.23 58.84 26 E3a_E4a KnownJunction 0 98.98 346.85 190.15 181.63 258.83 690.11 457.88 417.76 469.15 513.60 5.00 6.15 6.82 7.42 16.94 4.02 9.54 672.29 299.77 717.73 118.18 76.42 90.83 27 ER4a ExonRegion 0 55.78 410.14 218.64 208.02 266.40 614.84 436.42 376.19 453.60 456.50 5.13 8.73 10.43 6.45 7.01 4.39 8.86 490.68 265.39 667.40 85.30 59.86 52.95 28 E4a_E5a KnownJunction 0 73.20 447.55 124.89 153.99 324.53 617.71 486.01 301.40 352.60 300.53 5.16 19.96 14.93 2.47 10.75 4.36 0.00 243.66 188.90 579.60 64.00 54.19 24.07 29 E5a_E6a KnownJunction 0 71.72 429.59 130.78 156.26 285.14 698.86 404.84 262.46 342.79 339.19 5.16 13.20 0.00 7.24 4.82 0.00 3.93 355.96 189.46 467.11 83.03 45.13 42.94 30 ER5a ExonRegion 0 64.04 445.20 150.04 188.43 289.08 687.40 440.54 346.07 439.29 412.89 6.51 19.40 8.34 3.43 4.41 2.97 0.00 403.49 210.00 583.69 84.88 55.02 36.44 31 ER6a ExonRegion 0 64.78 452.71 235.73 235.69 391.73 795.70 520.11 391.59 466.33 450.33 6.22 9.33 3.09 3.05 2.66 1.96 5.31 442.89 256.83 670.56 94.01 71.87 51.95 32 E6a_E7a KnownJunction 0 88.02 572.20 284.79 305.36 474.53 832.13 645.44 508.13 539.09 520.05 7.95 5.40 6.82 2.12 5.44 3.67 4.02 354.05 207.16 816.29 96.68 99.26 44.64 33 ER7a ExonRegion 0 73.60 521.02 276.53 317.42 395.74 812.15 580.53 466.47 510.81 495.98 7.02 8.57 3.78 2.86 7.92 2.81 3.06 381.16 268.94 724.99 67.44 76.17 46.22 34 E7a_E8a KnownJunction 0 139.43 858.14 327.01 364.19 498.81 1137.07 922.87 504.72 584.22 513.47 9.42 6.30 6.17 2.47 0.00 0.00 4.02 310.03 215.44 786.63 48.25 85.48 28.08 35 ER8a ExonRegion 0 123.01 637.34 287.11 355.63 466.47 1121.78 697.83 467.60 548.73 511.90 9.40 8.53 3.98 3.20 3.30 1.71 0.85 353.42 206.47 707.28 39.37 75.07 36.40 36 E8a_E9a KnownJunction 0 174.48 697.90 336.24 449.73 625.64 1396.01 756.24 546.74 623.17 570.12 9.90 18.61 6.82 9.59 4.45 3.76 0.00 356.79 214.22 770.78 39.72 87.87 61.46 37 I8_AR5 ActiveIntronRegion 0 0.88 2.40 2.00 4.81 8.14 0.95 18.30 5.03 4.87 2.89 0.00 0.00 2.95 0.00 0.71 0.00 0.00 13.87 3.24 16.66 12.93 0.72 2.24 38 I8_AR6 ActiveIntronRegion 0 2.46 4.19 6.09 3.58 8.07 0.93 14.70 2.73 1.66 3.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.04 2.57 11.11 9.24 0.40 3.46 39 ER9a ExonRegion 0 120.54 967.31 341.91 372.36 481.53 848.15 575.82 536.70 572.74 523.03 9.98 11.00 2.38 2.76 5.19 3.55 4.90 365.17 310.08 740.06 74.61 75.01 42.58 40 E9a_E10a KnownJunction 0 169.73 1601.23 432.69 417.26 447.54 692.50 621.77 613.65 622.42 549.11 10.58 18.76 0.00 0.00 0.00 4.19 8.98 345.39 254.97 831.05 85.75 67.79 43.54 41 E9a_E11a NovelJunction 0 6.74 81.30 0.00 24.51 0.00 24.87 6.76 17.05 14.24 11.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.71 7.91 5.75 0.00 2.39 0.00 42 ER10a ExonRegion 0 126.58 1935.53 379.93 374.46 549.34 904.59 715.36 536.92 538.46 514.02 8.44 10.67 2.48 2.88 2.24 3.01 6.66 291.55 208.03 721.15 73.07 70.59 37.01 43 E10a_E11a KnownJunction 0 194.48 2451.47 563.85 591.30 790.92 1537.81 1022.54 683.06 637.46 613.77 14.48 13.80 0.00 2.41 0.00 3.50 0.00 327.98 288.01 907.24 55.72 120.26 30.73 44 ER11a ExonRegion 0 80.04 1309.64 367.17 382.86 441.02 634.03 544.54 598.79 474.70 483.04 2.23 8.34 2.54 1.64 0.86 0.57 1.81 94.02 83.65 407.90 10.83 82.11 17.58 45 ER11b ExonRegion 0 1.06 43.21 18.38 7.50 14.05 15.13 18.54 23.77 14.51 16.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 11.17 0.00 2.08 0.00 46 IG20 Intergenic 0 1.22 26.28 6.32 8.90 17.60 13.75 34.98 24.37 7.22 19.13 0.00 0.00 0.00 0.00 0.00 0.00 0.76 16.34 4.40 17.68 5.59 3.37 6.78 47 IG20_AR1 ActiveIntergenicRegion 0 1.23 26.39 6.35 8.95 17.67 13.82 35.14 24.48 7.26 19.21 0.00 0.00 0.00 0.00 0.00 0.00 0.77 16.41 4.42 17.76 5.61 3.38 6.81