Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C9orf91 Gene 0 72.57 64.02 36.07 41.82 40.55 43.86 28.59 48.50 47.74 57.48 87.99 87.41 137.12 67.36 51.00 18.98 68.50 60.38 27.09 36.59 20.26 48.12 56.10 2 288502 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 374049 Transcript 0 4.82 2.88 2.48 1.21 0.67 3.16 1.99 3.63 4.56 3.95 10.34 7.87 9.76 10.46 2.50 6.83 12.56 6.25 5.58 2.30 1.84 5.03 6.61 4 471206 Transcript 0 3.02 1.42 1.67 2.42 1.71 3.41 2.35 7.68 9.67 6.72 6.59 4.98 4.34 12.26 5.58 1.34 9.35 10.50 7.95 8.77 2.73 4.77 5.47 5 448809 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 482552 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 9.59 4.45 0.00 4.02 0.00 0.00 0.00 3.15 8.94 0.00 7 IG28_AR1 ActiveIntergenicRegion 0 29.30 15.10 16.26 16.89 25.33 21.16 16.14 19.46 29.73 14.95 11.11 13.73 16.17 5.31 8.15 5.76 6.66 3.54 12.12 13.93 7.14 11.85 11.01 8 ER1a ExonRegion 0 0.00 1.23 0.74 0.41 0.10 0.37 0.00 0.00 0.74 0.69 2.64 0.00 0.00 0.27 2.59 0.21 2.83 3.38 1.42 1.14 0.44 0.42 0.59 9 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.16 0.00 2.47 0.00 0.00 2.06 0.00 4.10 8.70 12.64 7.81 3.20 0.00 0.00 0.00 10 ER1b ExonRegion 0 0.12 0.33 0.02 0.10 1.06 5.29 1.27 0.03 0.17 0.10 7.62 0.98 2.70 4.23 4.82 0.93 5.92 5.30 4.96 0.36 1.52 0.08 0.28 11 E1a_E2a KnownJunction 0 0.00 0.00 0.00 1.30 0.00 0.00 0.00 0.00 1.13 0.00 4.63 11.10 6.17 4.94 10.75 4.27 18.14 6.34 4.42 0.00 3.15 0.00 0.00 12 ER2a ExonRegion 0 8.67 9.22 5.93 5.53 2.28 10.57 1.45 13.49 16.02 9.11 32.87 9.08 9.56 38.78 15.15 4.62 35.90 25.73 12.67 12.42 8.54 10.64 19.90 13 E2_Da NovelBoundary 0 9.71 3.35 2.69 5.63 0.00 0.00 3.36 4.68 7.32 4.49 2.26 0.00 0.00 2.47 0.00 0.00 4.58 11.48 14.02 6.52 0.00 0.00 17.58 14 E2a_E3a KnownJunction 0 0.00 0.00 0.00 1.43 0.00 0.00 0.00 1.73 6.02 5.32 2.05 0.00 0.00 10.01 4.70 0.00 0.00 5.51 4.61 9.08 0.00 2.39 0.00 15 E2a_E3c KnownJunction 0 14.08 3.35 10.82 8.06 3.48 10.51 4.37 26.21 24.28 16.92 51.07 13.50 20.45 45.09 14.09 15.64 52.92 28.27 13.18 10.80 3.15 5.76 23.05 16 ER3a ExonRegion 0 6.04 2.85 3.34 3.42 3.42 6.82 4.70 13.63 13.32 8.12 11.14 9.97 8.67 14.51 6.46 2.68 18.69 15.49 11.30 8.47 5.46 7.15 10.94 17 E3_Ab KnownBoundary 0 3.78 3.29 4.70 3.70 8.40 4.88 6.27 8.95 13.37 8.92 9.58 18.46 6.82 26.37 18.79 0.00 27.86 10.61 13.27 7.48 5.75 8.51 11.10 18 ER3b ExonRegion 0 7.28 4.78 3.93 2.85 8.84 10.58 8.37 13.39 14.45 13.55 17.71 14.60 6.44 15.07 13.09 4.49 23.57 22.09 9.11 7.92 9.48 6.15 14.21 19 E3_Ac KnownBoundary 0 20.23 3.29 3.34 1.33 3.31 21.07 12.14 13.35 18.43 15.34 16.37 20.26 0.00 6.95 13.35 3.85 12.62 27.61 9.22 9.40 10.32 6.06 20.57 20 ER3c ExonRegion 0 30.25 16.14 7.18 7.89 11.17 29.49 13.41 35.38 37.87 31.11 79.18 33.21 41.61 73.99 30.00 15.11 79.40 64.43 31.82 33.07 20.66 27.64 46.80 21 E3a_E4a KnownJunction 0 0.00 0.00 2.96 0.00 0.00 0.00 0.00 2.55 1.74 0.00 2.68 6.30 5.84 4.59 0.00 7.86 8.79 2.57 4.80 0.00 0.00 4.84 4.18 22 E3a_E4b KnownJunction 1 28.75 8.49 7.13 16.71 3.14 29.93 14.84 32.98 33.59 40.99 87.39 42.46 61.36 86.64 17.92 16.41 85.65 52.73 43.01 40.65 17.05 21.98 53.52 23 ER4a ExonRegion 1 7.41 1.53 3.68 3.41 2.01 8.25 5.96 7.78 11.73 10.90 27.06 12.99 21.11 26.80 6.53 12.63 27.23 16.17 11.95 6.91 5.51 9.90 14.68 24 ER4b ExonRegion 1 12.80 17.47 13.55 18.49 13.70 26.62 13.73 27.35 47.78 47.91 84.83 49.65 53.08 86.43 30.12 20.00 83.73 74.50 21.79 41.50 22.00 24.55 60.30 25 E4a_E5a KnownJunction 0 20.60 17.89 33.00 16.78 16.81 35.21 4.24 36.76 59.75 42.17 89.08 38.71 55.52 99.36 34.37 11.71 99.30 104.59 14.21 47.43 14.21 35.58 27.49 26 ER5a ExonRegion 0 28.12 14.89 22.80 18.85 17.98 40.48 14.80 30.93 56.56 50.05 92.36 61.93 57.52 94.21 41.52 26.27 89.20 82.76 30.91 37.43 25.99 31.40 65.15 27 E5_Da NovelBoundary 1 19.78 21.58 25.84 19.68 24.45 52.13 15.19 25.71 47.48 53.48 98.55 36.16 80.84 100.71 30.53 31.02 77.14 56.63 4.80 46.02 30.64 21.86 63.25 28 E5b_E6a KnownJunction 1 20.08 36.97 18.18 25.27 16.38 44.52 14.49 33.06 47.57 51.57 111.03 18.16 75.32 95.00 46.11 25.46 79.94 38.43 28.33 30.74 28.97 39.80 69.74 29 E5b_E7a NovelJunction 0 0.00 3.22 4.44 0.00 0.00 0.00 6.09 2.18 2.43 10.40 2.68 5.55 0.00 6.89 0.00 0.00 13.46 6.55 0.00 3.00 2.53 5.39 4.35 30 ER5b ExonRegion 1 13.63 23.26 16.52 20.01 25.15 48.93 11.23 30.49 49.70 47.85 103.99 19.40 71.10 104.53 37.25 25.32 88.33 43.61 19.11 35.15 31.73 33.42 67.78 31 ER6a ExonRegion 0 16.61 21.49 24.51 16.32 9.88 30.27 12.24 27.25 40.07 46.16 80.71 53.36 49.77 72.28 47.10 21.61 68.22 57.18 23.99 36.84 25.41 31.20 41.77 32 E6_Da NovelBoundary 0 6.67 5.85 4.55 8.79 0.00 0.00 0.00 4.39 4.83 5.56 0.00 6.30 13.47 7.18 0.00 13.07 4.58 3.90 0.00 5.94 2.59 3.12 8.45 33 E6a_E7a KnownJunction 0 33.19 12.63 21.41 24.81 6.88 30.10 22.74 37.25 54.63 54.61 116.13 69.02 93.83 95.65 66.01 24.95 89.01 94.85 36.90 34.96 23.85 53.52 54.46 34 E7_Aa NovelBoundary 0 6.59 3.16 1.33 5.79 8.32 20.16 0.00 4.85 4.98 3.01 6.42 0.00 25.97 2.47 6.30 4.36 7.76 8.50 0.00 6.26 0.00 0.00 7.51 35 ER7a ExonRegion 0 29.87 24.88 25.78 28.72 21.44 45.51 24.27 33.46 45.20 62.49 137.19 58.42 80.37 94.26 42.48 17.80 87.37 95.12 20.13 39.51 38.17 52.60 47.71 36 E7a_E8a KnownJunction 0 24.30 28.88 31.81 31.90 44.06 67.52 35.33 28.83 47.48 72.55 127.19 48.62 132.46 106.01 43.76 26.32 43.29 99.36 26.35 34.45 28.11 64.05 49.08 37 ER8a ExonRegion 0 30.41 21.45 27.99 33.18 20.82 45.24 15.89 35.65 51.09 72.74 123.61 50.98 68.63 94.88 57.39 19.15 72.31 110.10 26.51 45.01 29.06 44.95 61.38 38 E8a_E9a KnownJunction 0 41.49 36.64 21.35 29.93 3.14 41.91 14.53 39.39 56.57 72.04 82.28 61.37 66.07 97.71 50.31 8.46 73.40 89.58 8.09 40.14 25.33 45.62 26.12 39 ER9a ExonRegion 0 33.37 40.34 35.17 33.19 28.20 51.02 24.02 42.24 45.63 59.18 86.88 48.37 65.77 75.91 62.81 10.45 76.49 83.37 17.97 41.09 21.74 39.03 50.95 40 E9_Ab KnownBoundary 1 38.38 48.28 48.99 35.76 52.21 65.76 40.72 49.54 43.11 59.07 89.18 37.66 73.53 79.40 77.76 3.85 81.07 65.58 0.00 35.86 21.31 52.05 53.10 41 ER9b ExonRegion 0 35.88 31.07 32.53 35.26 29.27 40.40 17.56 50.90 51.64 54.62 100.03 42.67 48.82 76.58 55.56 13.78 70.17 113.33 29.20 47.82 23.39 48.79 82.29 42 E9_Da KnownBoundary 0 42.16 35.65 30.60 45.42 37.18 32.71 11.84 55.86 55.82 54.53 85.92 54.17 39.12 73.75 30.16 21.28 78.17 95.30 44.24 18.41 13.34 73.48 77.85 43 E9a_E9c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 9.59 4.45 0.00 4.02 0.00 0.00 0.00 3.15 8.94 0.00 44 ER9c ExonRegion 0 110.63 151.93 41.11 60.87 70.06 65.01 43.48 84.67 78.98 103.29 128.71 168.13 269.24 103.27 65.63 23.39 107.93 81.51 37.56 47.81 26.62 88.83 86.71 45 E9_Ac KnownBoundary 0 42.60 187.01 64.01 112.17 108.23 72.91 80.02 156.53 103.53 172.59 256.22 448.05 484.06 160.22 112.99 41.10 205.98 86.72 54.31 81.75 37.38 100.30 97.14 46 ER9d ExonRegion 1 47.55 99.02 56.85 64.98 110.62 81.53 57.13 109.78 107.98 139.00 256.81 268.38 394.86 125.01 67.01 21.15 192.22 89.10 43.24 66.30 42.08 86.91 65.95 47 E9_Db KnownBoundary 1 100.24 97.48 31.34 54.47 67.40 43.38 32.95 79.68 104.74 115.75 204.10 205.27 528.37 97.12 55.88 9.83 131.09 101.06 48.10 66.79 47.14 85.73 77.17 48 ER9e ExonRegion 0 132.19 88.22 69.94 70.79 81.40 78.66 49.08 74.50 84.46 94.08 156.55 231.18 397.18 124.44 78.28 37.56 117.06 105.96 43.05 56.61 32.78 91.86 98.90 49 E9_Dc KnownBoundary 1 72.90 72.03 35.75 36.26 50.34 46.90 23.10 60.67 62.82 59.18 91.34 126.19 404.52 61.51 51.55 33.41 40.67 59.69 25.79 30.94 22.30 34.35 78.19 50 ER9f ExonRegion 0 97.56 70.91 44.15 51.60 41.79 42.20 33.59 48.82 38.50 48.95 68.23 59.78 94.33 45.91 57.55 19.26 48.99 42.28 26.95 35.67 16.63 41.82 50.12 51 ER9g ExonRegion 0 7.06 7.12 0.82 0.23 0.00 1.22 0.00 0.58 0.21 0.96 1.29 4.33 2.35 0.00 0.97 0.00 1.65 0.00 0.00 0.00 0.00 0.35 0.98