Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MRRF Gene 0 104.17 85.09 72.99 64.38 57.90 59.23 48.07 48.30 56.90 54.92 158.56 108.75 76.66 156.03 165.23 147.36 154.09 61.37 84.55 74.61 73.06 58.12 64.86 2 344641 Transcript 0 4.95 1.69 1.60 0.54 0.00 0.22 0.00 1.15 0.66 1.34 1.84 0.72 3.68 2.25 3.13 2.64 1.65 2.63 3.12 3.30 1.28 0.41 2.01 3 297908 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 394315 Transcript 0 3.78 10.06 1.21 5.59 0.00 2.61 0.00 0.00 1.50 6.69 6.90 0.00 0.00 5.42 20.27 7.95 4.11 4.44 4.05 5.62 5.62 2.63 6.91 5 441707 Transcript 0 6.08 9.14 7.42 5.09 12.14 0.00 7.77 0.00 2.89 4.03 11.85 17.71 0.00 9.65 4.45 12.13 13.00 1.78 13.84 15.15 6.05 2.45 8.19 6 373729 Transcript 0 0.00 0.00 0.00 0.00 4.07 2.73 2.25 0.00 0.00 0.00 2.21 0.00 0.00 0.00 14.22 3.25 3.93 1.70 0.00 0.00 0.00 0.00 7.68 7 373727 Transcript 0 0.00 0.00 3.31 4.69 0.00 0.00 2.25 2.01 0.00 2.77 2.68 5.55 0.00 2.30 0.00 0.00 4.39 6.55 0.00 3.13 2.78 0.00 0.00 8 373728 Transcript 0 55.35 35.73 27.01 33.74 35.49 31.43 35.36 32.81 32.91 35.23 46.05 53.16 33.52 35.70 32.18 31.32 32.35 16.97 23.64 22.57 35.34 23.76 29.20 9 470366 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 373724 Transcript 0 0.00 2.70 0.00 1.53 0.00 0.00 0.00 0.00 3.44 0.00 1.95 0.00 0.00 0.00 4.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 467864 Transcript 1 18.84 1.98 0.81 3.79 1.17 3.09 2.49 2.57 0.06 3.58 1.08 12.78 18.87 16.72 5.02 10.51 18.11 0.00 2.87 6.49 1.40 0.15 3.44 12 373730 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 402028 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 373723 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 489572 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16 ER1a ExonRegion 0 3.55 0.00 1.56 1.09 0.00 0.44 0.00 2.30 1.32 0.00 0.46 0.00 1.10 1.79 1.43 2.32 0.00 5.26 3.05 3.06 2.56 0.82 4.03 17 E1_Ab KnownBoundary 0 0.00 0.00 1.60 0.00 0.00 0.00 0.00 2.14 0.00 0.00 0.00 0.00 13.47 2.47 0.00 0.00 0.00 2.24 0.00 0.00 2.41 2.82 4.18 18 E1_Ac KnownBoundary 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 4.36 0.00 0.00 0.00 0.00 3.15 0.00 4.35 19 ER1b ExonRegion 0 3.45 1.28 1.48 2.22 0.99 0.68 1.05 3.64 0.20 0.42 0.71 0.00 7.90 5.21 3.97 2.97 5.21 1.94 0.34 2.58 3.83 2.63 8.81 20 E1_Ad KnownBoundary 0 42.38 27.69 5.50 16.98 15.28 21.41 25.66 6.65 4.92 3.55 31.32 0.00 0.00 39.79 72.93 53.23 69.85 20.19 20.14 43.91 15.51 13.29 71.02 21 ER1c ExonRegion 0 29.13 20.22 4.83 11.06 10.55 22.33 15.19 7.83 6.54 4.39 21.15 1.53 1.38 22.16 45.05 38.99 48.15 11.63 11.24 33.42 13.48 8.21 52.00 22 ER1d ExonRegion 1 100.96 65.48 19.36 23.03 62.88 123.96 63.55 22.99 30.38 16.52 75.77 4.33 4.69 63.67 141.87 131.67 102.00 23.65 56.38 86.17 53.77 27.09 127.74 23 E1a_E2a KnownJunction 1 87.20 67.55 4.55 6.89 76.66 42.65 54.19 11.99 11.43 13.51 69.18 0.00 0.00 75.34 41.78 107.24 95.56 27.28 120.57 41.48 32.99 14.14 84.77 24 E1a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 E1a_E3c KnownJunction 1 257.45 221.47 53.19 63.99 152.89 349.17 195.51 45.06 69.10 41.29 292.34 5.70 6.49 332.63 371.72 359.48 283.59 106.08 151.91 191.24 122.26 83.09 168.25 26 E1a_E3d KnownJunction 0 0.00 0.00 0.00 0.00 4.07 2.73 2.25 0.00 0.00 0.00 2.21 0.00 0.00 0.00 14.22 3.25 3.93 1.70 0.00 0.00 0.00 0.00 7.68 27 E1a_E4a NovelJunction 0 14.00 11.97 1.80 5.29 3.82 28.34 13.34 2.55 2.89 3.09 53.07 0.00 0.00 21.25 28.18 16.15 30.11 0.00 31.53 6.52 11.74 15.31 24.24 28 ER1e ExonRegion 1 150.63 99.98 27.26 36.68 103.91 201.57 129.64 30.82 45.18 28.48 150.61 4.33 4.69 134.94 219.77 213.75 175.22 45.42 96.89 140.96 79.33 50.70 177.91 29 ER1f ExonRegion 1 227.35 237.08 47.79 53.38 152.96 273.24 165.38 44.65 60.21 48.55 294.93 4.33 10.94 298.57 355.40 374.49 335.87 108.09 195.63 200.18 117.71 77.09 224.41 30 ER2a ExonRegion 0 31.32 40.99 6.77 15.32 28.25 20.15 24.73 7.94 10.32 12.40 46.18 27.01 18.70 28.29 11.95 73.56 81.50 24.15 45.32 29.99 17.52 5.16 26.95 31 E2_Da KnownBoundary 0 20.60 8.49 2.60 5.26 0.00 0.00 15.24 3.94 1.19 4.46 5.11 36.61 26.13 10.77 0.00 12.13 13.18 1.53 0.00 8.88 2.72 0.00 3.41 32 E2a_E3c KnownJunction 0 0.00 0.00 3.31 4.69 0.00 0.00 2.25 2.01 0.00 2.77 2.68 5.55 0.00 2.30 0.00 0.00 4.39 6.55 0.00 3.13 2.78 0.00 0.00 33 ER2b ExonRegion 0 11.42 9.61 16.81 10.56 25.52 12.12 18.56 10.15 7.81 8.61 40.25 38.15 28.44 42.23 17.23 44.52 47.56 10.33 27.57 26.84 13.84 11.83 27.24 34 E2_Db NovelBoundary 1 6.30 24.67 26.26 22.01 11.63 5.79 12.01 10.76 7.96 3.84 16.74 61.52 33.44 19.19 4.45 27.77 30.76 10.28 23.25 28.63 8.65 11.45 15.11 35 E2b_E3c KnownJunction 0 6.08 9.14 7.42 5.09 12.14 0.00 7.77 0.00 2.89 4.03 11.85 17.71 0.00 9.65 4.45 12.13 13.00 1.78 13.84 15.15 6.05 2.45 8.19 36 E2b_E3d KnownJunction 0 0.00 2.70 0.00 1.53 0.00 0.00 0.00 0.00 3.44 0.00 1.95 0.00 0.00 0.00 4.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 I2 Intron 0 12.05 8.66 7.30 9.36 12.90 4.27 10.15 5.70 4.55 5.79 16.28 29.79 20.57 20.76 9.69 13.70 19.33 4.02 8.32 10.11 3.42 7.69 8.22 38 I2_AR1 ActiveIntronRegion 0 26.77 18.71 5.08 8.97 20.43 4.18 13.62 7.59 5.37 7.16 18.95 31.92 31.07 23.38 7.41 17.88 22.20 8.28 7.05 23.24 5.90 6.38 12.39 39 I2_SR1 SilentIntronRegion 0 10.25 9.17 8.74 9.26 13.29 4.59 12.99 5.30 4.42 6.24 18.64 38.49 19.03 23.28 11.04 15.80 20.97 5.16 10.26 11.14 4.91 9.37 7.83 40 I2_AR2 ActiveIntronRegion 0 9.91 5.75 5.87 10.02 10.59 2.10 6.83 5.41 4.96 4.64 16.37 26.22 27.38 19.72 10.43 10.68 17.53 2.92 8.10 7.32 2.10 7.77 6.87 41 I2_AR3 ActiveIntronRegion 0 14.28 5.21 8.02 8.76 6.14 8.34 8.22 5.39 3.62 5.89 12.95 25.83 20.37 16.30 11.23 13.03 19.58 2.10 5.39 8.32 2.25 5.41 3.08 42 E3_Aa NovelBoundary 1 47.49 8.88 11.53 18.51 30.05 16.81 12.90 6.94 1.68 8.92 14.27 48.47 48.54 14.13 23.73 27.94 21.88 5.68 13.84 12.02 3.15 13.78 0.00 43 ER3a ExonRegion 1 18.84 1.98 0.81 3.79 1.17 3.09 2.49 2.57 0.06 3.58 1.08 12.78 18.87 16.72 5.02 10.51 18.11 0.00 2.87 6.49 1.40 0.15 3.44 44 E3_Ab KnownBoundary 0 38.01 2.83 0.00 9.86 4.07 5.45 4.15 2.55 5.18 4.84 2.00 7.35 37.34 25.25 4.45 19.82 25.15 4.73 4.33 9.01 3.15 0.00 7.85 45 E3_Ac KnownBoundary 0 40.53 5.53 10.05 13.05 0.00 5.05 11.39 6.12 6.83 9.67 14.58 6.30 6.82 11.36 9.15 27.17 26.74 0.00 0.00 6.52 0.00 5.63 12.72 46 ER3b ExonRegion 0 55.56 24.15 13.94 16.78 11.37 23.95 19.11 9.94 9.34 13.62 34.07 12.99 18.47 38.88 35.72 54.80 56.73 7.39 15.93 22.47 11.98 10.29 18.35 47 ER3c ExonRegion 1 168.63 179.71 94.15 71.67 79.10 108.15 93.87 46.47 64.20 66.33 233.29 58.33 60.55 162.63 171.37 237.97 248.75 93.49 114.49 121.20 91.76 61.99 86.15 48 E3_Ad KnownBoundary 1 84.31 39.27 40.21 36.86 14.94 13.00 48.89 23.70 34.00 27.21 115.29 61.67 58.60 62.28 74.66 34.95 126.41 20.40 29.55 55.61 40.96 22.04 30.05 49 ER3d ExonRegion 1 63.39 53.49 104.92 94.74 22.99 23.36 22.54 54.29 77.56 75.34 325.87 131.48 65.05 264.11 264.44 228.90 313.02 82.57 153.81 150.85 120.23 77.59 94.77 50 E3a_E4a KnownJunction 1 92.02 103.80 99.91 96.52 73.43 31.69 36.08 56.31 81.71 76.66 183.20 243.83 70.45 255.75 329.44 497.56 195.51 158.02 161.89 126.17 47.75 76.60 125.40 51 ER4a ExonRegion 0 100.90 169.65 90.82 74.31 130.46 156.21 111.69 63.63 75.10 69.19 315.88 242.23 108.56 255.74 227.30 242.51 252.56 86.13 111.92 116.88 89.17 93.21 80.87 52 E4a_E5a KnownJunction 0 175.88 363.88 83.97 81.28 108.40 68.82 88.28 63.13 118.63 82.47 385.15 207.97 200.96 388.67 286.92 260.70 335.11 84.86 81.41 165.42 98.04 99.81 89.20 53 ER5a ExonRegion 0 177.73 201.26 101.07 75.47 69.28 72.23 49.95 70.63 87.34 94.11 322.94 278.65 138.34 333.04 286.08 260.60 282.05 110.14 164.65 126.82 110.33 114.79 114.16 54 E5_Da KnownBoundary 0 50.90 54.66 29.15 23.24 31.58 24.36 16.61 34.79 59.58 32.58 37.06 36.16 45.29 55.86 17.80 25.81 41.80 15.50 21.46 29.79 48.56 26.21 23.82 55 E5a_E6a KnownJunction 0 43.93 21.71 15.70 23.17 23.51 11.87 18.11 27.23 3.10 14.29 19.79 24.61 12.82 16.48 10.75 31.36 12.34 7.67 13.46 6.14 2.29 12.92 24.76 56 E5a_E7a KnownJunction 0 14.22 0.00 3.67 3.16 0.00 4.43 0.00 3.86 0.00 12.03 19.43 19.21 0.00 12.01 31.15 15.47 4.77 14.67 8.38 6.14 2.66 2.76 12.89 57 E5a_E8a KnownJunction 0 132.91 107.22 98.19 28.10 16.47 57.30 23.05 45.67 36.26 35.75 201.68 168.20 67.53 199.07 203.35 191.23 215.71 95.30 74.17 99.84 56.53 48.62 53.95 58 E5a_E9a NovelJunction 0 3.04 0.00 6.27 0.00 0.00 2.16 0.00 0.00 2.49 2.85 2.68 0.00 0.00 9.30 15.20 0.00 12.25 4.35 13.46 0.00 0.00 3.12 0.00 59 ER5b ExonRegion 0 65.73 36.87 33.03 24.15 24.36 31.83 33.57 36.30 55.44 31.50 51.19 51.83 56.85 41.86 23.56 24.55 41.55 14.35 32.39 32.77 33.61 29.13 23.14 60 E5_Db KnownBoundary 0 95.57 37.95 39.27 33.50 61.46 9.20 35.73 38.08 45.72 28.23 62.17 5.40 26.13 37.91 33.75 34.78 51.61 17.49 20.05 31.64 25.21 26.51 30.47 61 ER5c ExonRegion 0 55.35 35.73 27.01 33.74 35.49 31.43 35.36 32.81 32.91 35.23 46.05 53.16 33.52 35.70 32.18 31.32 32.35 16.97 23.64 22.57 35.34 23.76 29.20 62 E5_Dc NovelBoundary 0 102.02 81.70 26.88 28.60 78.69 57.35 71.23 32.16 44.44 43.57 52.22 30.76 65.26 33.43 42.90 26.49 49.56 20.23 30.97 18.09 47.82 35.52 42.68 63 E6_Aa NovelBoundary 0 155.66 55.12 18.60 30.10 92.36 76.21 69.38 13.14 46.73 27.69 42.91 66.77 34.90 39.14 40.79 32.81 34.78 9.00 4.80 32.53 20.26 31.41 29.28 64 ER6a ExonRegion 0 132.91 69.45 43.18 69.39 61.89 43.78 42.50 29.27 52.25 42.18 59.57 65.59 42.15 57.54 48.70 62.57 54.42 19.17 34.56 28.17 40.67 35.63 47.13 65 E6_Da NovelBoundary 0 9.78 9.21 1.83 5.79 0.00 10.33 29.46 4.93 2.49 6.42 14.48 25.36 13.47 4.94 8.90 30.59 8.88 17.87 0.00 8.44 5.50 5.39 0.00 66 E6a_E7a KnownJunction 1 191.74 40.65 56.95 83.41 88.54 37.36 54.28 33.85 70.92 42.95 69.60 107.28 96.91 54.56 65.52 42.30 75.64 26.53 32.19 30.74 37.31 14.39 63.51 67 ER7a ExonRegion 0 133.61 78.39 67.20 87.31 77.51 48.90 50.37 40.77 65.17 51.39 74.14 63.08 53.83 73.92 68.16 84.06 69.47 33.87 45.32 51.81 55.73 47.16 60.25 68 E7a_E8a KnownJunction 0 168.03 130.50 78.71 55.20 85.65 106.36 72.43 41.73 94.21 65.14 97.29 45.76 54.22 101.60 64.40 73.83 42.36 20.02 51.95 61.55 46.27 35.58 59.84 69 I7_AR1 ActiveIntronRegion 0 8.47 4.77 9.92 5.60 6.96 2.85 9.74 4.82 5.92 7.75 2.23 17.60 20.61 4.19 3.93 9.58 7.27 2.03 5.54 4.54 6.24 2.05 2.77 70 ER8a ExonRegion 0 185.89 188.48 144.15 112.19 112.47 114.09 81.31 76.26 104.03 84.60 308.30 194.21 131.88 368.82 330.52 286.45 269.42 114.86 121.01 140.19 168.92 110.43 126.12 71 E8a_E9a KnownJunction 0 194.78 189.05 169.33 125.76 97.62 97.90 60.50 97.10 77.60 95.82 260.96 187.56 175.15 304.79 365.17 274.63 282.56 117.56 121.04 107.19 139.37 98.03 114.56 72 E8a_E10a KnownJunction 0 3.78 10.06 1.21 5.59 0.00 2.61 0.00 0.00 1.50 6.69 6.90 0.00 0.00 5.42 20.27 7.95 4.11 4.44 4.05 5.62 5.62 2.63 6.91 73 ER9a ExonRegion 0 211.47 150.07 171.74 130.21 85.62 108.12 83.00 102.19 107.54 111.59 326.47 221.55 166.41 384.84 383.91 375.32 362.50 188.67 228.89 155.42 193.25 124.83 165.61 74 E9_Da KnownBoundary 0 244.49 153.72 186.98 153.99 133.02 87.62 118.67 109.17 128.44 140.65 414.42 263.19 145.77 468.36 519.44 549.00 475.27 229.73 375.45 175.13 230.18 212.48 205.21 75 ER9b ExonRegion 0 172.34 106.98 183.17 131.45 85.24 90.15 88.75 101.15 119.25 120.77 386.30 206.73 116.75 389.18 448.87 389.77 407.84 161.05 249.20 144.38 188.06 167.28 139.81 76 E9b_E10a KnownJunction 0 207.81 113.86 169.21 118.07 54.41 88.76 66.20 104.94 117.27 98.58 379.89 160.40 124.83 296.49 438.10 249.85 387.28 92.07 198.88 142.41 155.25 90.26 99.70 77 ER10a ExonRegion 0 229.01 139.53 157.83 100.17 97.37 102.92 63.15 90.51 106.44 111.36 388.64 219.56 105.54 343.31 423.02 337.43 384.19 154.72 194.77 134.52 176.77 114.19 122.07 78 E10_Da KnownBoundary 0 396.51 242.00 166.88 102.45 131.07 148.15 99.59 88.84 93.34 98.31 408.00 261.24 182.94 396.61 738.74 612.06 449.37 196.65 372.43 179.86 157.72 250.81 203.59 79 ER10b ExonRegion 0 162.70 141.51 134.66 90.66 83.41 72.83 74.83 75.90 79.32 91.00 304.31 152.10 102.06 352.08 464.96 327.26 280.86 153.04 204.21 131.04 128.01 125.78 123.98 80 E10_Db KnownBoundary 0 131.80 147.08 114.78 90.40 142.87 74.84 104.89 67.57 66.96 74.38 210.32 139.55 54.38 310.44 442.55 204.82 226.09 98.16 168.76 129.69 117.81 97.67 124.54 81 ER10c ExonRegion 0 154.66 118.12 115.95 93.19 85.92 94.14 69.50 68.98 82.26 84.91 221.94 139.78 114.80 266.86 319.80 211.74 225.37 83.89 115.28 101.04 106.42 85.62 91.32 82 E10_Dc KnownBoundary 0 77.72 119.39 49.17 61.83 19.61 23.34 36.92 49.21 44.21 55.44 84.55 73.22 87.01 51.09 63.54 111.34 68.54 55.30 86.40 49.47 46.33 56.27 31.58 83 E10_Dd KnownBoundary 0 171.96 112.02 57.98 78.91 28.52 41.34 25.22 54.79 57.15 44.54 93.34 31.21 86.36 47.03 111.87 126.98 92.38 38.10 53.46 79.96 33.79 79.42 44.13 84 ER10d ExonRegion 0 198.25 178.62 103.14 135.15 45.93 66.93 54.28 90.46 96.96 107.81 177.18 161.63 207.14 141.57 255.31 225.39 143.04 83.76 122.64 109.22 78.97 121.19 82.72 85 ER10e ExonRegion 0 95.34 81.15 78.98 86.48 50.77 46.01 36.85 64.04 58.92 55.24 115.93 120.25 130.82 104.43 136.70 119.04 116.91 58.00 71.30 77.29 54.33 54.63 41.42 86 ER10f ExonRegion 0 6.35 3.39 1.63 0.00 0.00 0.00 0.00 0.00 0.00 2.68 3.22 1.44 6.25 2.71 4.84 2.97 3.30 0.00 3.19 3.55 0.00 0.00 0.00 87 IG27_AR2 ActiveIntergenicRegion 0 11.79 12.39 14.02 8.93 7.44 5.92 18.45 9.05 9.88 7.73 9.71 26.94 18.90 13.73 17.83 17.90 19.87 21.03 24.49 26.05 10.65 13.49 14.51 88 IG27_SR2 SilentIntergenicRegion 0 6.39 10.08 12.63 4.37 6.02 3.92 14.18 6.45 7.78 5.42 5.96 27.28 26.25 8.22 16.41 9.63 20.91 6.60 18.72 21.78 3.61 8.50 11.17 89 IG27_AR4 ActiveIntergenicRegion 0 7.73 13.00 8.90 5.48 7.95 0.56 9.20 4.93 5.93 4.12 8.93 26.85 26.32 9.16 14.04 6.45 18.87 8.61 14.04 15.23 4.31 13.30 11.61 90 IG27_SR4 SilentIntergenicRegion 0 14.85 17.83 21.62 11.99 8.78 3.02 12.40 8.35 10.49 5.14 9.89 23.75 24.59 7.64 19.08 13.96 12.67 22.07 29.70 23.23 12.84 12.02 14.23 91 IG27_AR5 ActiveIntergenicRegion 0 6.84 6.26 9.27 4.78 8.61 2.27 3.31 10.64 4.10 3.60 3.59 5.39 6.22 7.40 12.76 4.05 6.13 9.43 12.63 11.84 4.09 10.81 5.93 92 IG27_AR7 ActiveIntergenicRegion 0 1.85 0.00 0.00 0.44 0.00 0.00 0.87 0.00 0.81 0.00 7.62 0.78 0.00 7.33 1.42 1.22 2.89 0.00 0.01 0.00 1.93 2.28 3.86 93 IG27_AR9 ActiveIntergenicRegion 0 3.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.91 0.00 0.00 7.28 1.63 4.74 0.00 0.00 0.00 0.00 8.78 31.25 35.10