Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 UGCG Gene 0 191.87 88.70 88.33 92.42 188.57 92.17 125.07 173.73 111.65 119.18 159.91 236.62 228.49 164.14 108.35 124.32 117.61 30.51 28.79 57.82 30.26 160.84 71.72 2 374279 Transcript 0 106.30 109.04 57.32 77.29 162.18 116.64 135.83 159.37 124.88 118.88 215.13 270.90 231.08 229.11 77.68 190.36 175.25 50.30 33.60 86.44 55.28 160.48 107.96 3 489355 Transcript 0 7.75 6.66 6.49 6.88 13.12 2.27 18.44 8.66 4.46 5.49 11.04 21.98 14.49 10.82 5.64 7.56 7.31 1.56 1.97 8.93 2.28 4.67 7.81 4 490110 Transcript 0 7.62 9.43 6.61 1.36 3.47 1.50 7.56 10.28 6.46 9.58 11.79 25.27 9.67 16.45 1.70 9.68 13.89 6.37 1.47 7.01 1.75 4.44 1.89 5 495085 Transcript 0 7.95 6.38 1.00 3.16 4.86 6.61 7.66 4.69 5.13 4.15 6.18 6.17 17.13 6.30 2.86 5.04 3.25 2.27 1.25 1.39 0.60 5.46 3.25 6 474306 Transcript 0 6.10 1.78 10.33 7.32 6.52 1.88 5.00 10.93 9.66 5.21 6.11 19.36 19.78 6.99 4.99 7.91 8.46 0.91 0.08 2.66 0.58 6.90 3.50 7 ER1a ExonRegion 0 0.89 2.59 0.78 1.09 2.36 8.30 5.46 3.48 3.11 3.93 17.88 3.33 3.85 25.69 7.21 51.70 23.15 4.41 3.83 4.46 6.23 5.21 37.44 8 E1_Ab KnownBoundary 0 13.56 27.50 4.79 1.90 36.08 42.48 21.33 22.55 8.80 18.35 30.59 6.60 6.17 55.09 18.54 50.50 26.18 14.09 8.66 14.38 24.83 21.25 51.73 9 E1_Ac KnownBoundary 0 13.11 28.42 8.25 5.06 8.23 44.97 33.92 14.42 21.33 17.51 31.22 10.50 0.00 72.81 30.90 30.85 46.94 11.69 4.14 23.46 22.86 25.47 47.46 10 ER1b ExonRegion 0 7.76 30.59 6.38 2.04 22.19 41.49 31.44 14.12 9.57 21.60 31.25 0.72 1.56 70.72 24.30 31.45 36.03 5.00 4.25 11.44 22.31 27.61 60.45 11 ER1c ExonRegion 1 7.43 14.51 11.42 10.48 19.06 9.82 20.11 30.76 28.19 40.89 102.53 24.12 38.78 130.31 30.02 64.43 86.24 17.52 5.46 27.34 40.16 56.89 33.14 12 E1a_E2a KnownJunction 1 20.67 6.58 18.66 19.64 20.12 0.00 22.66 77.84 54.95 68.36 144.56 89.73 95.45 185.89 38.69 84.08 129.50 42.70 18.92 52.48 43.43 107.83 40.80 13 I1_AR1 ActiveIntronRegion 0 7.07 2.22 9.01 5.11 2.27 1.92 11.20 11.01 6.59 3.94 3.84 6.04 11.57 2.91 3.54 7.38 15.62 2.92 3.04 6.02 3.64 1.93 14.42 14 ER2a ExonRegion 1 30.02 53.22 32.46 34.05 60.56 41.05 51.27 94.52 76.17 87.52 239.22 119.30 171.81 190.59 56.88 144.52 170.34 53.01 18.28 68.61 44.34 106.41 104.50 15 E2_Da KnownBoundary 0 8.96 9.01 10.47 9.19 7.56 0.00 17.14 11.71 4.14 10.69 18.85 6.30 88.14 21.78 0.00 7.60 12.25 5.02 0.00 14.96 0.00 2.33 11.18 16 E2a_E3a KnownJunction 0 3.78 6.71 7.51 0.00 7.56 2.33 6.23 11.95 2.92 14.85 17.06 38.56 6.33 28.19 0.00 21.79 13.84 9.12 3.95 6.46 2.90 5.76 3.41 17 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 E2a_E4b KnownJunction 1 22.37 101.56 26.99 34.73 121.39 156.27 109.08 98.17 77.00 88.35 219.90 141.05 179.53 164.46 32.63 210.12 157.46 49.04 21.93 43.27 36.14 148.61 57.28 19 ER2b ExonRegion 0 7.75 6.66 6.49 6.88 13.12 2.27 18.44 8.66 4.46 5.49 11.04 21.98 14.49 10.82 5.64 7.56 7.31 1.56 1.97 8.93 2.28 4.67 7.81 20 ER3a ExonRegion 0 8.85 13.04 6.24 2.22 2.85 2.16 14.24 12.14 7.89 9.29 15.64 25.09 22.67 13.33 5.10 7.24 16.50 5.64 0.45 6.08 2.34 4.62 2.26 21 E3a_E4b KnownJunction 0 10.22 8.55 6.09 1.86 0.00 0.00 2.21 6.74 8.56 4.59 2.68 12.15 0.00 7.83 0.00 0.00 11.31 4.35 0.00 8.50 0.00 2.94 0.00 22 I3 Intron 0 15.85 7.06 15.61 10.00 14.54 4.32 17.75 16.57 6.28 8.15 11.73 39.12 46.53 16.03 10.25 12.03 11.66 2.03 2.79 9.32 3.33 13.59 8.51 23 I3_AR1 ActiveIntronRegion 0 22.94 8.95 26.20 14.25 16.69 4.29 23.40 25.95 8.13 9.89 15.97 47.45 65.47 21.17 11.15 8.91 14.35 2.12 2.27 11.97 4.04 14.28 9.77 24 I3_AR2 ActiveIntronRegion 0 16.55 0.00 18.42 15.58 19.11 5.44 16.08 27.72 6.00 18.84 11.32 42.83 31.16 22.39 20.00 19.85 19.10 1.52 3.53 11.32 4.33 10.79 13.53 25 I3_SR2 SilentIntronRegion 0 19.32 5.79 17.82 16.00 20.12 8.30 24.31 17.08 6.01 11.39 17.95 34.73 25.28 18.58 17.52 17.67 17.14 1.61 4.14 9.10 4.92 14.90 12.12 26 ER4a ExonRegion 0 15.91 12.76 2.01 6.32 9.73 13.23 15.33 9.38 10.26 8.31 12.36 12.33 34.25 12.60 5.71 10.09 6.50 4.54 2.51 2.77 1.20 10.92 6.50 27 E4_Ab KnownBoundary 0 51.42 24.40 4.88 12.49 11.46 18.74 29.63 16.59 15.48 12.95 16.95 19.21 74.67 9.54 11.25 7.78 3.93 6.38 7.53 7.99 0.00 16.59 11.35 28 ER4b ExonRegion 1 67.33 100.42 50.42 58.16 118.47 100.52 118.81 126.36 111.39 103.27 228.03 307.05 290.00 211.22 64.51 175.09 156.76 31.12 30.29 70.50 24.22 192.95 70.85 29 E4a_E5a KnownJunction 0 63.79 98.80 80.30 78.08 173.26 39.47 105.55 158.18 133.42 130.71 244.17 402.43 270.60 210.84 69.23 140.56 135.30 24.08 30.02 90.70 20.26 163.55 84.51 30 ER5a ExonRegion 1 101.24 116.37 71.71 94.33 175.39 84.59 122.84 144.00 141.87 131.15 251.28 354.80 256.66 259.65 75.18 155.57 163.14 32.37 21.49 83.56 33.64 211.72 92.22 31 E5a_E6a KnownJunction 1 107.57 93.14 97.63 73.72 195.76 104.54 129.66 136.90 139.76 125.71 234.32 260.18 263.13 244.04 65.02 148.25 135.58 28.35 21.27 82.07 30.33 234.10 71.19 32 ER6a ExonRegion 1 104.45 111.28 80.79 84.44 162.35 92.12 125.53 149.49 159.99 118.56 213.56 399.52 325.79 252.00 73.61 167.89 143.01 46.71 31.19 81.05 49.05 185.34 80.31 33 E6_Da KnownBoundary 0 180.77 124.06 81.78 106.28 167.32 96.25 163.84 184.22 192.82 135.71 223.06 530.72 327.90 257.82 144.01 199.95 168.02 70.55 43.39 88.72 66.35 199.68 76.06 34 ER6b ExonRegion 1 100.23 157.43 64.52 83.70 158.79 65.34 119.23 164.87 145.62 135.76 268.84 400.72 298.82 295.87 76.84 187.67 194.61 86.90 24.89 82.49 73.73 173.62 100.35 35 E6_Db NovelBoundary 0 12.45 15.52 41.69 0.00 7.98 2.78 25.75 26.49 15.25 3.98 2.11 18.61 6.33 9.48 0.00 3.76 15.80 2.57 3.95 2.62 2.35 2.57 3.24 36 E6b_E7b KnownJunction 1 109.43 172.14 50.83 70.52 84.21 56.62 112.79 145.73 108.36 121.20 261.43 363.27 144.96 262.52 33.25 203.45 172.42 63.13 22.21 80.34 47.63 152.84 133.68 37 I6_SR1 SilentIntronRegion 0 11.63 2.86 28.56 4.28 14.33 1.55 5.97 26.13 11.93 9.39 6.26 9.15 6.88 7.21 14.14 18.84 9.77 3.75 2.24 3.30 4.35 4.11 10.34 38 ER7a ExonRegion 0 6.10 1.78 10.33 7.32 6.52 1.88 5.00 10.93 9.66 5.21 6.11 19.36 19.78 6.99 4.99 7.91 8.46 0.91 0.08 2.66 0.58 6.90 3.50 39 E7_Ab KnownBoundary 0 3.33 0.00 8.81 14.42 3.82 2.67 0.00 21.32 11.37 7.28 14.32 12.60 6.82 7.83 8.90 17.09 13.37 0.00 0.00 3.26 3.03 4.71 20.32 40 ER7b ExonRegion 1 96.90 117.05 61.76 91.89 146.65 107.55 115.36 172.89 150.56 142.22 291.18 388.56 303.33 322.94 87.16 246.40 244.96 92.47 40.70 110.88 84.64 188.01 146.07 41 E7_Da NovelBoundary 0 62.90 93.34 40.24 52.74 30.81 41.91 80.20 115.25 89.18 90.71 87.97 191.46 191.71 122.67 48.83 140.82 129.41 65.99 23.25 39.25 25.08 79.30 79.22 42 E7b_E8a KnownJunction 1 48.68 136.42 62.74 96.32 98.05 76.55 142.34 179.25 163.31 168.67 207.58 283.29 255.83 328.04 53.53 254.72 228.80 109.73 21.93 81.69 80.93 155.23 134.19 43 ER7c ExonRegion 1 61.56 133.71 56.16 86.09 84.73 70.75 117.28 186.10 151.40 159.80 216.97 334.45 284.14 302.49 71.81 266.75 234.36 109.63 31.85 79.26 78.42 145.50 132.15 44 ER8a ExonRegion 1 68.29 133.95 59.85 96.33 118.79 74.99 114.17 188.99 152.05 152.03 272.39 285.06 262.27 285.76 69.63 253.33 236.27 110.04 22.30 86.84 93.19 160.60 117.00 45 E8_Da KnownBoundary 1 130.91 159.05 66.53 103.45 155.86 96.54 132.09 196.21 156.25 145.94 328.87 307.30 328.06 302.61 74.79 253.44 238.71 101.56 16.85 94.92 104.77 180.88 120.02 46 ER8b ExonRegion 1 89.07 127.16 61.57 89.48 151.53 132.30 136.37 194.65 164.35 137.09 322.79 382.05 293.84 302.65 77.15 244.02 282.80 80.06 45.05 117.59 87.65 201.63 151.93 47 E8b_E9a KnownJunction 1 100.54 155.10 60.88 89.67 196.01 158.09 205.53 185.45 178.90 137.29 300.81 365.37 292.03 320.09 80.10 269.07 269.66 58.24 42.17 136.21 72.96 199.50 146.65 48 ER9a ExonRegion 0 106.69 126.78 76.90 97.29 165.53 117.47 146.92 205.45 170.78 145.90 277.75 373.88 322.23 307.67 101.35 246.78 250.92 81.30 44.24 106.79 84.27 195.99 154.67 49 E9_Da NovelBoundary 0 47.93 0.00 39.77 13.62 33.11 2.56 9.76 32.61 14.38 12.46 17.43 15.30 41.23 15.54 13.35 31.02 26.65 6.26 8.09 2.36 5.81 11.08 14.51 50 E9a_E10a KnownJunction 1 108.98 131.95 38.38 91.86 209.08 112.44 166.85 174.89 130.84 153.27 181.26 325.31 218.33 295.78 80.97 172.18 114.26 50.16 38.50 128.03 71.04 149.53 129.84 51 I9 Intron 0 26.63 4.30 18.91 8.82 27.11 3.68 16.51 30.98 18.04 9.52 13.34 21.27 24.76 5.76 4.48 11.91 7.72 3.89 2.13 5.92 0.98 12.99 6.21 52 I9_SR1 SilentIntronRegion 0 34.70 2.32 21.38 11.98 38.40 5.54 18.94 39.81 25.63 14.62 13.06 40.11 39.32 6.05 4.65 17.83 7.22 6.36 4.38 6.62 1.24 17.70 8.65 53 I9_AR2 ActiveIntronRegion 0 24.11 2.68 19.67 3.71 28.52 3.26 17.00 30.27 16.36 6.07 8.33 18.16 27.75 5.67 3.68 9.80 7.43 1.57 2.31 5.19 0.00 9.75 7.32 54 ER10a ExonRegion 0 315.54 118.16 135.76 136.94 289.34 131.59 180.64 253.53 149.15 166.32 185.50 305.33 307.76 187.46 164.38 138.63 128.48 28.86 39.48 68.73 28.64 222.89 77.92