Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TEX10 Gene 0 66.66 129.98 72.16 51.50 62.05 43.45 57.59 49.43 41.06 83.88 119.04 134.10 104.54 94.69 72.93 90.66 111.34 57.33 62.43 80.26 47.38 91.79 58.74 2 374902 Transcript 0 21.03 81.77 35.91 23.18 24.00 23.73 36.42 22.87 18.76 79.73 170.09 156.93 120.25 98.79 46.39 90.84 146.51 49.85 49.01 73.58 45.67 77.25 56.10 3 444730 Transcript 0 0.00 1.41 4.61 0.87 0.00 0.00 0.00 1.97 0.00 2.63 2.00 11.48 3.41 4.91 2.23 12.56 5.52 1.29 0.00 0.00 1.58 1.56 0.00 4 429235 Transcript 0 7.56 9.54 8.19 3.36 3.90 7.33 6.01 7.43 6.60 12.76 14.58 36.76 34.90 9.89 8.90 4.36 16.83 0.00 0.00 0.00 11.00 15.37 0.00 5 477648 Transcript 0 60.78 56.71 42.94 41.75 60.66 35.14 49.99 43.19 36.85 41.18 29.79 69.98 63.71 25.69 24.46 34.79 38.17 25.28 37.00 50.87 18.59 61.36 30.81 6 ER1a ExonRegion 1 39.38 48.68 2.73 5.28 9.42 24.18 17.54 3.35 3.81 22.13 48.48 0.00 8.99 51.19 19.70 86.81 97.79 28.26 24.55 39.10 40.72 37.33 65.10 7 E1_Ab KnownBoundary 1 138.39 159.64 9.91 18.95 32.94 52.70 52.24 12.20 12.15 57.08 135.09 0.00 6.49 142.50 30.29 246.26 259.47 112.17 77.74 108.02 104.96 95.71 181.57 8 ER1b ExonRegion 1 58.05 81.11 11.06 8.64 18.73 19.16 23.57 14.09 9.42 39.30 57.75 11.91 11.49 41.85 8.27 88.72 102.08 44.53 24.02 35.74 49.84 39.47 61.25 9 E1a_E2a KnownJunction 1 6.08 9.67 4.29 3.76 3.40 0.00 3.62 0.00 13.98 30.68 69.70 0.00 13.80 35.20 0.00 15.21 169.71 4.60 0.00 14.32 61.16 8.94 0.00 10 ER2a ExonRegion 0 9.89 44.02 43.25 32.28 28.65 36.62 34.82 41.14 32.32 106.64 191.90 224.45 287.28 141.44 71.32 197.48 189.11 88.55 73.50 102.28 53.62 140.24 123.42 11 E2a_E3a KnownJunction 0 17.41 118.73 86.31 62.00 37.35 67.52 60.24 98.50 55.90 172.53 282.23 453.45 316.86 343.11 353.30 216.01 238.52 89.41 154.64 169.06 25.33 448.05 152.46 12 ER3a ExonRegion 0 19.52 155.03 73.57 58.20 33.27 37.24 61.46 72.06 56.51 186.78 473.63 394.57 235.60 196.58 113.47 153.93 380.91 77.88 102.64 191.83 87.55 229.44 105.79 13 E3_Da KnownBoundary 0 20.23 130.83 49.85 25.34 36.76 33.67 65.05 25.51 28.70 116.82 262.12 286.29 233.43 118.43 91.85 100.14 220.20 33.74 74.92 124.70 65.73 170.05 64.02 14 E3a_E3c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E3_Ab KnownBoundary 1 23.63 105.44 42.07 40.15 29.80 25.21 37.01 39.68 20.80 114.22 273.44 309.55 220.93 115.66 40.79 85.28 172.51 35.69 18.64 93.70 39.60 100.12 57.96 16 ER3b ExonRegion 0 19.82 132.18 62.83 40.14 35.03 30.09 59.16 42.74 34.47 156.81 345.02 355.41 252.41 122.03 75.04 109.02 235.56 53.08 62.11 126.11 59.30 161.00 70.21 17 ER3c ExonRegion 0 122.93 154.79 107.86 74.24 55.33 41.61 73.70 89.98 65.76 216.86 453.48 512.47 590.24 273.67 158.50 243.37 375.58 111.54 114.38 201.54 97.80 313.32 142.75 18 E3_Ac KnownBoundary 1 229.52 197.20 127.94 86.17 65.96 41.45 97.38 86.95 73.90 213.93 538.61 872.68 948.48 490.79 386.68 380.07 455.63 111.76 217.42 306.48 134.43 395.94 203.42 19 ER3d ExonRegion 0 53.04 133.44 102.32 65.31 33.18 37.67 69.06 58.63 52.57 167.63 356.58 517.89 390.02 230.59 106.48 197.05 320.12 118.07 110.98 168.38 88.81 212.06 138.73 20 E3_Db KnownBoundary 1 13.11 157.54 74.48 53.51 48.13 27.82 80.02 36.15 44.21 141.13 284.23 334.91 218.98 158.99 43.51 141.76 293.31 106.45 102.69 147.97 85.31 186.76 148.36 21 E3b_E3d KnownJunction 0 0.00 2.83 9.22 1.73 0.00 0.00 0.00 3.94 0.00 5.26 4.00 22.96 6.82 9.83 4.45 25.12 11.03 2.57 0.00 0.00 3.15 3.12 0.00 22 E3b_E4a KnownJunction 0 7.56 9.54 8.19 3.36 3.90 7.33 6.01 7.43 6.60 12.76 14.58 36.76 34.90 9.89 8.90 4.36 16.83 0.00 0.00 0.00 11.00 15.37 0.00 23 ER3e ExonRegion 0 22.83 140.11 73.18 46.62 51.54 40.64 65.67 43.67 36.75 136.55 281.05 261.51 212.58 208.13 79.22 164.57 246.08 116.22 96.64 126.97 80.46 109.65 89.07 24 E3_Ad KnownBoundary 0 24.37 147.67 60.47 30.73 35.40 50.65 59.44 43.83 37.35 130.01 241.80 161.45 149.67 210.78 101.12 168.50 189.90 176.34 97.70 111.02 88.96 54.38 92.28 25 ER3f ExonRegion 0 33.43 167.57 66.74 45.23 48.51 47.80 70.13 46.69 42.36 140.76 277.10 226.12 163.18 262.12 101.04 237.92 244.97 153.32 114.95 127.94 111.73 121.31 117.59 26 E3c_E4a KnownJunction 0 20.37 141.95 71.94 45.12 57.98 41.85 112.66 38.73 35.18 129.61 262.49 295.00 166.87 224.50 103.71 179.78 201.87 156.98 108.90 145.92 135.54 118.30 97.31 27 ER4a ExonRegion 0 37.58 185.00 78.00 43.45 64.92 61.81 85.46 56.92 44.09 128.76 275.79 263.55 143.43 205.18 93.58 170.39 253.17 82.94 85.17 137.95 81.82 148.07 96.72 28 E4a_E5a KnownJunction 0 93.65 227.53 71.20 58.33 63.41 51.05 107.45 67.73 51.19 134.36 289.97 258.23 230.50 201.66 170.96 152.61 252.27 46.22 64.10 145.86 47.01 214.75 73.58 29 I4_AR1 ActiveIntronRegion 0 6.35 6.10 5.31 9.09 5.35 7.34 7.72 3.46 8.65 12.04 18.36 4.33 29.70 4.87 0.00 6.44 13.20 0.62 0.00 15.96 2.20 6.25 2.45 30 I4_AR2 ActiveIntronRegion 0 4.01 3.64 4.05 7.85 2.93 2.18 14.22 5.47 8.12 7.55 12.84 31.41 16.00 3.65 3.32 8.33 10.61 4.43 6.10 15.84 1.67 6.10 5.28 31 I4_AR3 ActiveIntronRegion 0 8.78 24.48 17.74 9.04 7.85 2.97 9.78 10.69 8.19 8.99 6.06 15.26 14.00 4.06 9.38 4.51 6.69 1.68 3.22 10.12 0.22 9.91 3.57 32 E5_Aa NovelBoundary 0 22.60 73.80 36.60 18.71 19.61 0.00 12.81 20.17 5.82 15.15 4.95 13.95 19.32 0.00 5.19 4.36 0.00 1.82 0.00 17.39 2.53 13.41 7.26 33 ER5a ExonRegion 0 71.61 274.28 113.57 67.19 87.68 67.33 105.16 59.84 52.49 151.56 232.65 400.88 250.69 190.78 136.41 134.38 221.28 39.05 78.62 139.22 36.88 171.31 68.19 34 E5_Da NovelBoundary 0 6.59 46.90 27.44 5.76 4.33 2.90 5.92 30.07 6.19 9.43 2.53 19.66 6.66 0.00 8.90 11.19 4.02 4.44 4.71 18.28 2.97 10.78 3.93 35 E5a_E6a KnownJunction 0 76.46 256.14 105.32 74.05 109.25 106.93 88.68 41.40 47.92 150.70 260.96 409.63 194.95 137.44 125.84 129.20 281.81 39.30 83.11 134.10 38.55 172.43 41.66 36 E5a_E8a NovelJunction 0 0.00 5.00 3.52 0.00 0.00 0.00 2.25 1.77 4.48 1.67 22.22 0.00 6.66 12.07 17.06 0.00 8.88 5.89 4.71 3.26 11.68 17.02 27.91 37 I5_AR8 ActiveIntronRegion 0 11.35 9.83 5.45 6.24 7.01 5.70 11.06 10.20 10.30 8.23 3.58 10.65 9.16 2.92 7.67 6.73 5.68 8.66 9.74 19.39 5.93 6.38 11.56 38 I5_AR9 ActiveIntronRegion 0 11.21 22.52 11.18 15.72 11.24 1.47 9.13 10.97 7.55 11.42 2.44 14.92 12.53 2.00 4.09 6.07 11.81 5.42 4.78 20.03 2.36 5.74 11.35 39 E6_Aa NovelBoundary 0 6.30 14.80 18.83 7.42 8.66 18.91 12.72 17.09 13.72 3.73 2.53 6.45 8.28 0.00 0.00 8.72 4.11 3.61 0.00 16.62 2.53 2.45 3.84 40 ER6a ExonRegion 0 79.22 252.96 115.72 77.95 94.20 64.48 85.68 50.85 51.08 142.14 251.88 362.91 229.58 160.86 116.92 144.18 235.15 58.09 87.44 125.99 55.81 137.61 59.38 41 E6_Da NovelBoundary 0 25.41 17.43 23.18 8.89 14.86 4.77 0.00 13.43 5.09 9.83 2.47 12.00 6.49 0.00 0.00 4.36 0.00 5.26 4.61 12.98 0.00 11.27 3.67 42 E6a_E7a KnownJunction 0 56.45 190.30 154.25 103.58 101.78 59.00 100.16 60.46 52.86 131.35 219.11 329.66 195.77 174.41 134.62 196.87 191.12 81.83 125.37 100.99 32.99 155.96 62.23 43 I6 Intron 0 9.23 34.04 12.37 9.64 4.79 4.00 7.11 3.81 6.88 10.11 4.82 11.64 8.91 1.92 2.72 3.47 9.77 5.87 0.99 14.08 3.08 8.44 5.49 44 I6_AR1 ActiveIntronRegion 0 5.23 26.39 10.13 10.95 5.22 4.20 6.30 4.42 7.28 9.52 5.36 11.17 8.10 1.73 1.14 3.82 14.22 6.39 1.33 17.23 3.16 7.24 5.48 45 I6_SR1 SilentIntronRegion 0 14.40 44.04 15.31 8.04 4.28 3.76 8.20 3.07 6.42 10.94 4.16 12.32 10.02 2.18 4.76 3.05 4.14 5.25 0.57 10.16 3.00 10.02 5.54 46 E7_Aa NovelBoundary 0 13.34 97.61 35.92 8.16 7.89 2.90 5.83 3.90 7.99 16.55 4.74 6.30 0.00 5.12 0.00 0.00 8.51 1.74 4.52 8.37 2.90 5.82 7.34 47 ER7a ExonRegion 0 89.51 220.96 117.57 76.91 130.99 101.00 100.55 59.96 46.84 168.68 277.16 332.21 188.54 230.12 182.49 256.56 240.56 113.94 130.53 115.96 74.66 152.05 117.04 48 E7_Da KnownBoundary 0 139.73 239.63 154.76 64.83 174.11 147.53 97.29 73.03 56.08 204.02 245.54 274.14 183.10 337.69 252.43 289.75 229.45 174.15 137.23 143.49 37.93 196.93 154.25 49 ER7b ExonRegion 0 95.06 184.79 144.91 65.33 112.67 87.19 81.31 72.26 55.90 198.59 315.73 227.77 156.91 254.92 192.18 249.79 266.73 153.20 145.97 114.94 69.18 174.06 147.98 50 E7b_E8a KnownJunction 0 110.24 236.14 153.01 79.58 100.59 61.50 114.47 90.40 59.11 215.06 393.99 280.14 182.62 206.37 130.42 229.85 312.86 131.82 152.76 122.72 115.28 144.33 123.69 51 ER8a ExonRegion 0 116.58 281.35 126.65 75.93 85.82 83.18 83.57 71.62 44.84 171.64 290.00 269.09 156.21 237.92 213.54 244.29 269.06 159.81 141.10 106.59 136.54 144.51 133.00 52 E8a_E9a KnownJunction 0 138.84 295.08 158.48 87.10 117.57 92.11 74.81 60.13 36.92 161.33 218.00 233.78 112.01 224.79 238.71 240.02 232.82 167.10 111.25 106.87 133.81 94.12 158.35 53 ER9a ExonRegion 0 96.62 267.06 143.91 84.64 64.52 71.43 67.88 66.54 39.73 141.67 213.30 159.68 93.19 198.96 186.67 179.30 183.24 120.11 106.24 103.61 116.33 113.19 112.40 54 E9a_E10a KnownJunction 0 141.88 350.00 156.29 106.38 80.73 68.03 66.99 61.94 37.56 149.57 177.62 151.70 97.88 230.62 180.11 218.92 161.38 122.45 85.56 135.50 62.95 103.12 100.73 55 ER10a ExonRegion 0 141.28 441.31 169.56 99.12 88.81 88.85 74.16 70.17 51.21 157.60 263.37 129.45 92.69 221.03 192.33 191.52 184.63 126.54 134.72 119.58 118.13 132.76 113.61 56 E10a_E11a KnownJunction 1 149.58 674.88 159.22 94.83 113.58 127.03 117.61 62.72 41.12 169.36 221.69 132.04 51.62 211.96 196.55 136.03 205.52 89.04 147.58 112.30 92.17 65.34 103.55 57 ER11a ExonRegion 0 169.45 646.31 169.90 95.22 78.73 71.09 86.12 56.42 43.66 149.51 193.20 129.40 71.30 176.14 171.48 145.43 157.68 109.27 95.06 112.97 83.66 114.24 99.36 58 E11a_E12a KnownJunction 0 162.62 459.65 194.40 77.78 87.61 69.05 72.12 51.96 46.90 208.93 156.30 177.21 153.07 158.16 186.29 114.59 180.55 40.87 125.18 125.15 48.50 159.39 65.13 59 I11_AR1 ActiveIntronRegion 0 14.52 12.87 8.21 10.79 14.05 10.24 14.75 12.33 20.00 13.26 7.98 17.79 19.67 8.00 8.40 9.30 11.88 12.34 12.80 23.89 9.95 19.26 17.68 60 E12_Aa NovelBoundary 0 11.26 24.27 7.86 1.30 11.80 14.31 4.46 10.88 25.29 11.26 5.00 18.31 6.01 9.42 13.35 17.43 13.84 8.00 31.53 12.59 21.93 11.57 12.72 61 ER12a ExonRegion 1 124.69 411.79 185.68 102.05 129.59 65.72 62.96 62.50 53.14 161.76 224.60 130.26 63.17 227.82 204.77 139.51 150.74 95.35 98.71 121.83 75.61 105.38 93.72 62 E12_Da NovelBoundary 0 13.11 8.16 6.56 8.72 4.07 11.24 6.36 13.27 16.35 13.22 11.42 13.20 33.60 6.65 5.19 19.57 21.69 3.48 17.79 23.01 14.39 11.33 4.35 63 E12a_E13a KnownJunction 0 157.44 484.65 210.55 112.24 155.35 58.72 78.34 80.75 47.19 151.13 193.36 71.87 65.58 208.67 224.12 129.54 85.74 112.50 68.24 112.69 66.41 74.70 113.62 64 E12a_E14b NovelJunction 0 0.00 0.00 5.03 0.00 0.00 0.00 2.25 6.12 1.79 1.58 2.68 0.00 0.00 10.30 4.33 4.10 0.00 4.77 0.00 0.00 3.15 2.45 3.50 65 I12_SR1 SilentIntronRegion 0 10.79 12.88 2.83 7.75 17.66 10.71 15.23 6.23 11.29 13.02 13.46 25.37 19.95 9.34 7.46 10.61 19.60 9.93 10.19 20.29 9.89 17.80 10.58 66 I12_AR2 ActiveIntronRegion 0 5.74 10.89 3.66 11.82 5.43 2.94 13.21 8.63 10.82 6.36 9.84 26.80 19.53 7.57 2.82 8.50 12.66 5.74 8.28 16.07 7.06 16.25 16.34 67 E13_Aa NovelBoundary 0 17.04 18.02 6.65 16.15 8.49 7.89 16.61 8.42 27.86 7.20 14.53 47.42 19.48 11.83 4.45 16.06 26.09 12.19 8.66 26.21 0.00 15.25 23.65 68 ER13a ExonRegion 0 114.44 484.82 178.97 93.39 67.39 55.79 78.83 66.44 61.42 148.05 171.26 85.54 58.63 187.00 183.35 104.92 141.10 71.22 83.50 110.18 82.59 108.01 83.24 69 E13_Da NovelBoundary 1 3.78 11.71 4.44 10.06 14.94 7.21 18.68 8.75 17.19 27.56 33.75 90.63 92.04 5.47 9.39 12.56 46.56 15.96 25.51 27.42 2.35 43.66 19.55 70 E13a_E14b KnownJunction 1 175.22 303.37 172.61 83.71 36.33 53.26 53.97 68.22 54.95 128.53 156.41 38.26 33.60 209.78 255.02 156.97 110.52 108.19 103.44 84.12 93.84 96.44 74.95 71 I13 Intron 0 6.51 9.05 2.81 7.23 11.06 8.76 18.22 11.05 13.11 9.13 15.97 44.35 38.12 9.42 4.08 9.86 16.03 4.03 8.25 16.19 2.85 23.95 11.41 72 I13_SR1 SilentIntronRegion 0 9.80 10.85 3.13 5.92 7.62 11.09 14.53 10.30 9.12 11.42 14.29 37.77 38.91 9.65 4.99 5.32 13.09 2.13 10.48 14.20 3.82 20.98 12.56 73 I13_AR1 ActiveIntronRegion 0 5.02 8.26 2.68 7.88 12.71 7.72 20.02 11.45 15.02 8.11 16.81 47.60 37.92 9.36 3.67 12.02 17.47 4.93 7.25 17.19 2.41 25.44 10.92 74 E14_Aa NovelBoundary 1 3.33 20.13 3.28 4.79 7.98 2.44 18.42 9.57 25.64 12.79 20.16 40.06 97.56 9.77 4.45 20.76 21.60 5.97 0.00 30.04 9.45 43.90 8.02 75 ER14a ExonRegion 1 60.78 56.71 42.94 41.75 60.66 35.14 49.99 43.19 36.85 41.18 29.79 69.98 63.71 25.69 24.46 34.79 38.17 25.28 37.00 50.87 18.59 61.36 30.81 76 E14_Ab KnownBoundary 0 68.46 32.10 43.29 32.76 45.08 15.84 46.37 65.06 31.80 48.06 28.95 24.61 60.71 38.67 17.80 28.62 69.94 49.62 51.77 69.29 27.43 37.41 40.29 77 ER14b ExonRegion 1 100.89 194.71 180.88 86.78 68.30 46.08 52.88 86.18 69.85 151.92 186.58 52.86 33.97 167.80 229.86 127.19 147.24 143.05 116.87 123.71 119.43 107.83 88.66 78 E14_Da NovelBoundary 0 19.41 28.81 24.10 29.13 11.71 37.82 38.69 21.11 30.24 35.57 16.37 29.86 20.45 26.19 13.35 18.80 36.37 57.58 44.90 60.98 14.58 27.00 20.40 79 E14a_E15a KnownJunction 1 78.16 105.24 205.55 97.79 15.28 38.61 54.14 55.70 59.72 162.70 184.89 38.11 6.66 160.28 196.55 157.22 94.25 112.88 61.84 89.80 96.99 82.91 67.10 80 I14 Intron 0 29.63 21.82 16.52 15.63 20.73 17.12 29.75 25.03 23.47 23.26 17.39 65.36 48.75 24.77 17.65 25.31 29.86 22.39 31.88 49.34 19.40 36.79 29.25 81 I14_AR1 ActiveIntronRegion 0 29.69 21.86 16.55 15.66 20.77 17.15 29.80 25.08 23.51 23.30 17.42 65.48 48.84 24.82 17.69 25.36 29.91 22.42 31.94 49.43 19.43 36.86 29.31 82 E15_Aa NovelBoundary 1 46.30 27.23 24.33 30.97 36.59 54.51 43.32 38.86 40.16 26.70 22.64 83.28 27.11 26.19 9.52 27.69 68.44 63.13 61.27 54.84 32.49 36.74 24.93 83 ER15a ExonRegion 0 73.68 77.84 122.36 59.35 32.74 26.56 36.38 63.33 57.59 112.86 112.45 94.89 71.70 99.71 147.76 92.52 92.78 69.52 77.92 96.88 84.65 111.52 52.63 84 ER15b ExonRegion 0 21.69 18.30 16.54 6.47 1.34 3.21 6.29 6.05 6.79 11.18 10.15 28.14 17.59 28.42 30.46 7.43 8.25 6.47 17.52 10.11 8.26 8.85 2.94 85 ER15c ExonRegion 0 2.12 6.10 4.90 0.68 0.00 0.00 3.31 1.73 0.00 3.44 5.80 10.82 7.04 13.81 11.61 2.97 6.60 1.85 12.74 2.13 2.20 1.04 0.00 86 IG17 Intergenic 0 37.05 30.23 33.66 18.37 31.01 20.62 28.68 19.77 28.89 26.91 17.58 105.67 97.33 35.95 34.17 39.38 46.97 22.28 39.09 53.37 22.30 42.89 22.11 87 IG17_AR3 ActiveIntergenicRegion 0 36.15 35.78 31.61 18.79 35.28 20.41 34.53 17.61 33.32 24.81 14.34 113.43 77.35 30.16 36.52 35.11 40.50 14.68 30.27 55.17 15.29 45.53 18.93 88 IG17_SR2 SilentIntergenicRegion 0 67.50 53.09 33.96 16.78 40.71 18.09 28.47 28.75 32.65 35.26 18.49 83.08 125.05 29.52 27.60 49.72 41.26 10.69 23.85 51.98 7.42 34.04 18.73 89 IG17_AR2 ActiveIntergenicRegion 0 36.92 23.19 39.74 20.93 31.60 22.09 26.04 24.36 28.93 30.62 20.27 103.54 106.85 44.11 38.67 44.13 54.62 31.17 50.54 58.50 31.74 42.31 26.35 90 IG17_SR1 SilentIntergenicRegion 0 7.53 1.81 0.27 0.15 8.32 6.72 8.68 2.11 3.98 1.40 2.79 18.28 20.84 7.94 6.77 7.60 9.90 2.67 7.08 7.56 1.47 9.72 3.59 91 IG17_AR1 ActiveIntergenicRegion 0 26.00 27.22 22.41 11.34 13.95 19.11 22.67 7.67 16.44 18.45 18.71 110.35 114.00 31.79 19.06 33.19 46.67 22.90 37.92 36.40 21.33 44.97 20.75