Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PRPF4 Gene 0 56.44 108.42 93.79 63.52 61.58 62.18 79.56 69.50 64.53 141.90 190.30 99.08 70.00 200.70 173.97 155.56 141.89 121.34 96.04 103.02 77.99 73.71 57.00 2 374199 Transcript 0 2.82 31.05 20.52 12.09 7.39 10.90 10.73 8.83 21.15 49.40 40.38 36.76 32.63 33.90 13.35 15.64 17.39 32.25 29.18 28.00 15.26 5.45 4.35 3 374198 Transcript 0 0.53 10.97 4.89 3.76 0.67 1.83 7.24 4.93 6.29 14.57 19.17 10.65 16.53 8.97 3.63 9.19 22.41 15.29 13.98 5.85 2.48 2.34 1.47 4 488937 Transcript 0 6.93 13.50 16.18 15.23 8.56 2.92 9.38 14.96 9.63 20.00 5.68 9.06 5.67 13.46 9.11 3.76 6.11 8.04 15.25 10.52 1.25 4.01 6.20 5 ER1a ExonRegion 0 11.32 21.85 7.83 6.34 31.25 54.43 42.70 8.08 8.49 21.54 37.85 3.85 6.89 66.27 34.03 49.89 37.84 33.29 42.62 23.75 25.86 14.83 29.09 6 E1a_E2a KnownJunction 0 0.00 6.18 1.21 2.06 0.00 0.00 1.90 2.51 1.77 7.63 7.90 6.15 18.99 4.94 0.00 8.72 17.58 9.33 8.85 0.00 0.00 0.00 0.00 7 E1a_E2b KnownJunction 0 2.82 31.05 20.52 12.09 7.39 10.90 10.73 8.83 21.15 49.40 40.38 36.76 32.63 33.90 13.35 15.64 17.39 32.25 29.18 28.00 15.26 5.45 4.35 8 ER2a ExonRegion 0 1.06 15.76 8.58 5.45 1.34 3.67 12.58 7.35 10.81 21.50 30.44 15.15 14.07 12.99 7.25 9.66 27.23 21.25 19.11 11.70 4.96 4.69 2.94 9 ER2b ExonRegion 0 11.90 38.08 50.32 40.26 21.15 19.78 22.96 46.88 63.86 140.03 199.57 51.64 50.82 240.28 116.25 189.68 163.87 125.49 154.46 102.54 103.41 64.71 87.92 10 E2a_E3a KnownJunction 1 14.15 145.04 58.07 53.84 188.12 89.27 83.47 29.90 68.23 152.41 217.37 84.33 48.21 242.04 86.78 199.26 135.95 161.50 101.65 104.95 79.14 75.99 64.71 11 ER3a ExonRegion 0 33.47 194.47 60.07 39.64 120.71 210.75 175.42 50.92 73.25 148.64 194.98 107.55 71.89 200.37 103.51 131.11 162.11 110.88 81.18 99.13 102.27 74.81 43.61 12 E3_Ab KnownBoundary 0 96.02 243.64 69.90 44.52 81.07 64.11 103.91 51.96 85.99 166.25 211.00 171.81 65.09 240.33 154.40 116.47 152.50 136.88 80.19 101.24 113.05 66.19 63.94 13 ER3b ExonRegion 0 61.80 177.39 82.63 46.45 78.21 48.26 74.67 65.63 79.61 162.43 242.55 166.99 70.62 262.60 116.80 160.24 165.52 143.28 78.36 123.46 93.50 97.98 80.30 14 E3a_E4a KnownJunction 0 73.49 202.27 107.45 64.23 100.34 43.84 75.83 78.12 88.11 197.30 264.96 181.11 93.99 316.79 162.06 218.92 237.31 149.98 106.92 157.94 91.18 131.96 101.92 15 ER4a ExonRegion 0 51.66 156.05 101.79 65.25 84.23 53.16 110.07 90.31 89.88 227.65 264.10 240.92 103.02 345.11 149.65 280.83 241.49 199.75 130.24 166.88 96.66 138.46 83.19 16 E4_Da KnownBoundary 0 0.00 2.83 14.16 12.35 19.61 0.00 12.45 17.13 7.78 27.61 2.26 0.00 0.00 4.94 12.61 3.85 9.26 6.96 21.55 11.95 3.15 8.57 0.00 17 E4a_E4b KnownJunction 1 37.49 119.12 74.27 53.41 87.35 88.41 150.29 71.67 95.83 199.85 314.08 365.37 127.59 327.98 132.15 237.72 232.54 197.07 144.95 147.33 88.65 125.41 50.19 18 ER4b ExonRegion 0 6.93 13.50 16.18 15.23 8.56 2.92 9.38 14.96 9.63 20.00 5.68 9.06 5.67 13.46 9.11 3.76 6.11 8.04 15.25 10.52 1.25 4.01 6.20 19 E4_Ab KnownBoundary 0 3.33 5.66 13.69 19.05 11.46 0.00 21.11 13.72 6.45 26.19 0.00 24.61 13.15 21.19 18.54 0.00 9.54 0.00 11.95 11.38 0.00 3.00 8.19 20 ER4c ExonRegion 0 33.58 153.54 99.31 66.84 84.95 84.27 138.47 70.63 94.04 221.48 372.92 295.49 113.41 296.33 163.46 205.48 255.37 168.82 182.36 151.40 105.73 105.17 79.89 21 E4_Db KnownBoundary 0 54.08 203.06 109.52 69.95 93.04 96.08 162.17 68.02 99.02 232.97 337.19 301.00 121.91 219.32 132.02 190.72 275.46 155.41 147.20 152.83 117.56 89.52 95.78 22 ER4d ExonRegion 0 40.27 182.38 98.03 63.04 112.92 101.75 116.89 61.58 85.54 210.28 322.35 270.41 122.88 240.18 131.47 200.66 230.69 165.51 129.14 148.75 114.91 92.69 99.51 23 E4c_E5a KnownJunction 1 44.82 211.74 96.89 62.00 151.53 142.13 134.21 67.32 92.56 202.62 278.75 247.28 79.38 302.67 149.82 233.70 216.36 177.84 122.83 140.43 93.28 89.65 108.67 24 E5_Aa NovelBoundary 0 13.85 22.10 9.88 5.59 29.12 2.90 34.36 8.46 9.20 9.43 4.84 19.66 0.00 4.77 8.90 4.36 4.77 7.96 9.60 8.76 0.00 0.00 4.35 25 ER5a ExonRegion 0 40.39 190.79 96.07 74.38 76.14 81.23 100.76 84.95 95.42 208.46 273.88 266.40 125.68 362.32 181.73 284.75 256.52 208.62 164.96 146.45 119.68 127.89 113.03 26 E5_Da NovelBoundary 0 2.82 7.96 17.86 5.99 0.00 7.84 6.58 21.52 11.60 17.49 19.32 18.91 8.28 16.01 10.51 27.34 18.89 17.62 25.32 14.96 13.90 5.51 8.71 27 E5a_E6a KnownJunction 0 71.64 160.56 128.77 93.93 78.44 21.64 100.47 70.98 107.15 216.29 323.50 365.67 126.78 426.51 232.15 263.78 257.88 209.59 199.91 147.58 109.10 117.02 95.18 28 E6_Aa NovelBoundary 1 3.63 3.22 2.87 17.85 18.59 5.56 7.68 13.68 10.30 15.34 0.00 6.00 40.58 10.18 13.72 7.52 8.60 6.67 9.41 11.70 3.15 8.45 4.18 29 ER6a ExonRegion 0 51.73 130.26 107.24 69.16 69.34 49.76 95.91 71.67 91.53 191.98 357.42 243.59 98.89 329.27 170.50 235.11 248.44 205.74 162.05 152.77 134.15 101.04 79.38 30 E6_Da NovelBoundary 0 6.67 17.96 13.42 12.65 25.30 0.00 11.88 17.42 9.84 16.79 2.63 23.71 6.82 4.83 6.30 3.85 9.07 5.43 0.00 5.62 6.18 2.63 11.61 31 E6a_E7a KnownJunction 0 64.90 115.37 122.38 62.30 46.01 38.56 76.67 80.55 80.21 152.12 262.65 203.47 82.30 279.54 201.37 158.93 211.59 200.22 70.68 158.96 115.40 82.67 57.71 32 E7_Aa NovelBoundary 0 14.45 29.73 13.96 14.72 7.64 8.29 21.02 23.70 20.57 36.21 11.85 0.00 19.48 21.66 17.80 0.00 4.68 17.91 31.81 29.85 5.62 12.74 8.28 33 ER7a ExonRegion 0 53.38 165.20 122.47 73.41 80.45 70.52 107.51 77.63 94.04 172.50 326.79 142.65 114.95 337.84 199.74 221.00 240.63 228.09 108.95 143.53 123.07 88.53 110.20 34 E7a_E8a KnownJunction 0 71.79 166.81 132.79 88.87 125.72 95.63 174.22 99.65 106.91 185.24 309.55 180.36 114.93 410.21 258.24 262.92 217.77 210.38 155.30 153.15 111.63 116.28 136.24 35 ER8a ExonRegion 0 36.25 130.33 102.28 84.82 86.10 104.02 128.95 92.17 83.06 190.28 316.64 143.22 141.31 339.45 207.95 230.94 238.60 211.57 121.45 166.61 142.85 92.85 83.88 36 E8a_E9a KnownJunction 0 30.30 123.33 120.46 83.67 91.60 81.54 107.45 46.00 71.90 161.33 222.32 126.49 112.01 304.55 224.74 156.80 187.28 218.42 141.37 120.29 108.54 83.52 65.39 37 ER9a ExonRegion 0 47.83 91.69 120.88 90.62 43.23 53.42 83.32 81.37 71.21 182.05 265.92 127.29 75.77 296.22 239.58 233.48 214.23 253.90 106.75 171.13 133.86 79.68 87.77 38 E9a_E10a KnownJunction 0 41.64 85.97 136.75 93.19 48.30 48.95 92.39 80.71 71.70 183.66 253.17 134.59 103.73 363.71 259.35 338.46 203.27 277.36 123.11 171.36 122.44 83.28 101.84 39 I9_AR1 ActiveIntronRegion 0 15.11 9.38 2.96 10.03 20.13 5.59 14.26 13.61 7.81 6.34 13.09 7.46 11.56 5.87 7.87 11.71 20.13 3.68 9.87 10.43 1.88 9.34 0.00 40 E10_Aa NovelBoundary 0 8.67 36.44 9.99 5.33 23.51 19.76 26.32 22.63 15.48 14.29 0.00 12.60 0.00 7.59 18.79 0.00 7.85 3.65 4.61 20.77 2.72 8.57 7.85 41 ER10a ExonRegion 0 42.92 101.45 113.35 91.26 71.44 66.24 87.79 71.46 77.67 203.94 299.62 117.92 120.57 313.71 237.48 247.27 220.11 216.13 125.60 159.64 129.28 102.14 71.84 42 E10_Da NovelBoundary 0 29.34 26.97 29.36 30.33 24.70 26.12 25.35 36.43 20.08 35.19 22.64 11.55 21.91 12.13 19.28 31.62 13.00 33.20 22.02 39.88 11.12 10.53 15.71 43 E10a_E11a KnownJunction 0 38.15 127.35 126.93 64.29 50.93 32.94 90.45 70.11 70.49 186.69 282.02 110.14 74.51 259.23 187.90 207.55 186.44 194.79 90.83 153.78 134.12 67.36 52.58 44 I10 Intron 0 12.64 13.08 5.03 8.40 9.84 3.37 12.17 10.65 10.99 10.21 18.65 10.18 5.70 16.15 15.11 9.56 4.55 3.80 14.64 14.66 8.10 11.49 2.70 45 I10_AR1 ActiveIntronRegion 0 12.87 13.32 5.13 8.53 10.02 3.43 12.39 10.85 11.20 10.39 18.99 10.37 5.81 16.45 15.38 9.73 4.60 3.87 14.90 14.93 8.25 11.68 2.75 46 E11_Aa NovelBoundary 0 52.75 54.20 19.63 10.16 41.26 16.41 53.44 25.14 28.27 26.06 18.85 25.21 13.64 23.19 13.35 40.84 4.39 15.88 22.12 26.65 5.87 5.39 4.35 47 ER11a ExonRegion 0 85.03 139.49 144.68 92.79 87.41 80.87 110.13 90.87 89.66 241.44 366.75 139.10 103.22 315.39 286.61 273.46 220.55 254.92 148.47 152.11 142.04 113.90 94.54 48 E11_Da NovelBoundary 0 29.04 9.54 7.78 11.89 8.40 35.26 10.25 10.02 16.32 16.17 2.16 6.30 12.34 10.07 8.90 4.36 0.00 13.93 12.52 26.97 2.66 14.39 0.00 49 E11a_E12a KnownJunction 0 97.50 116.23 165.16 96.56 64.35 95.51 95.97 71.88 93.43 250.65 285.12 137.74 175.31 264.29 259.10 211.82 227.49 193.46 110.31 152.89 104.34 146.59 81.18 50 I11 Intron 0 15.59 8.07 2.07 2.30 4.55 1.04 8.25 1.46 1.04 4.84 1.10 0.00 4.38 5.36 1.16 3.37 5.61 0.00 3.61 3.62 1.25 4.72 4.99 51 I11_SR1 SilentIntronRegion 0 15.87 8.16 2.12 2.35 4.65 1.06 8.43 1.49 1.07 4.95 1.12 0.00 4.48 5.48 1.19 3.44 5.74 0.00 3.69 3.70 1.28 4.83 5.11 52 ER12a ExonRegion 0 82.86 106.19 146.58 90.57 44.32 66.65 86.66 86.50 102.40 224.48 275.66 101.14 91.40 273.52 254.77 191.89 183.80 152.88 88.01 170.50 142.98 90.36 54.66 53 E12a_E13a KnownJunction 0 90.02 149.32 166.67 107.31 79.20 103.35 126.35 123.76 95.86 244.23 263.65 87.18 61.85 260.58 311.14 192.43 181.30 173.86 104.29 142.15 114.72 91.36 40.72 54 ER13a ExonRegion 0 87.43 135.68 128.30 83.87 73.55 63.64 89.01 94.53 76.83 162.32 201.52 103.55 79.88 206.11 238.93 167.66 145.49 119.80 104.19 112.50 74.72 88.13 57.67 55 IG4_SR1 SilentIntergenicRegion 0 3.73 14.52 2.44 1.51 6.58 3.15 6.82 1.56 3.87 3.98 12.16 21.95 1.95 15.51 25.08 7.00 3.89 9.17 6.79 13.73 1.85 2.19 2.36 56 IG4_AR1 ActiveIntergenicRegion 0 4.27 14.13 11.10 7.03 4.56 2.78 9.41 7.93 9.55 15.37 9.50 7.19 3.54 8.82 10.12 5.78 5.12 4.99 6.43 16.65 1.14 4.62 3.92