Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TRIM32 Gene 0 24.55 64.73 39.63 34.39 31.65 43.65 40.45 34.52 34.66 73.35 88.53 52.27 36.64 70.92 52.75 56.93 55.45 98.40 33.64 69.91 95.62 53.64 58.39 2 450136 Transcript 0 11.34 3.35 7.95 5.66 8.49 34.07 12.90 2.14 16.35 32.07 10.74 0.00 0.00 14.95 13.35 29.14 17.77 18.94 14.12 28.89 23.78 8.82 33.89 3 394497 Transcript 0 7.41 24.93 7.42 11.79 3.57 36.46 17.62 8.87 6.31 29.09 2.47 0.00 0.00 17.36 16.81 43.24 22.72 13.68 4.80 49.34 21.68 6.25 25.69 4 373983 Transcript 0 0.30 0.68 0.18 0.52 0.00 1.05 0.50 0.74 0.85 1.04 0.74 2.68 1.56 1.08 0.83 0.99 0.79 2.20 1.06 2.38 0.84 0.30 1.40 5 411410 Transcript 0 0.00 1.13 0.00 0.00 0.00 1.53 0.72 0.00 0.00 0.00 0.52 1.99 0.00 0.37 0.57 0.00 2.14 1.17 1.71 3.37 1.20 0.57 0.00 6 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.47 1.27 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 7 E1_Ac KnownBoundary 0 3.19 5.99 0.00 0.00 0.00 2.50 0.00 0.00 7.99 6.77 0.00 0.00 0.00 2.12 0.00 3.59 0.00 3.69 0.00 11.19 0.00 0.00 0.00 8 ER1b ExonRegion 0 0.00 0.00 0.66 0.31 0.00 0.00 0.00 0.00 4.85 5.65 0.00 0.00 0.00 1.62 2.68 0.00 0.00 0.00 0.00 8.18 0.00 0.00 0.00 9 ER1c ExonRegion 0 5.35 10.11 6.09 6.56 0.77 27.89 9.30 5.64 13.49 28.55 6.36 0.46 0.25 16.58 23.67 24.32 15.55 6.81 9.89 45.35 16.53 4.50 25.89 10 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.52 0.00 0.00 0.00 11 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 E1a_E3b KnownJunction 0 11.34 3.35 7.95 5.66 8.49 34.07 12.90 2.14 16.35 32.07 10.74 0.00 0.00 14.95 13.35 29.14 17.77 18.94 14.12 28.89 23.78 8.82 33.89 13 E1a_E3c KnownJunction 0 7.41 24.93 7.42 11.79 3.57 36.46 17.62 8.87 6.31 29.09 2.47 0.00 0.00 17.36 16.81 43.24 22.72 13.68 4.80 49.34 21.68 6.25 25.69 14 Ix_AR7 ActiveIntronRegion 0 2.12 6.46 3.68 4.09 0.00 3.67 15.97 7.32 13.88 10.52 0.91 11.72 18.76 5.64 2.90 2.10 7.38 0.00 0.00 19.52 2.20 8.82 0.00 15 Ix_AR8 ActiveIntronRegion 0 6.12 4.88 3.18 5.35 7.27 5.40 15.79 6.43 7.01 6.12 6.35 14.88 31.48 3.13 1.08 3.89 5.58 3.45 2.88 10.89 0.81 3.48 3.54 16 ER2a ExonRegion 0 0.00 3.40 0.00 0.00 0.00 4.60 2.17 0.00 0.00 0.00 1.55 5.96 0.00 1.12 1.71 0.00 1.73 1.85 5.12 3.59 3.61 1.71 0.00 17 E2_Da NovelBoundary 0 3.70 0.00 1.60 17.65 4.07 2.27 6.18 8.95 6.25 6.80 2.63 0.00 6.49 9.77 8.90 7.69 0.00 3.86 0.00 5.24 0.00 6.06 3.76 18 E2a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.68 1.66 0.00 0.00 0.00 0.00 0.00 19 Ix Intron 0 1.04 2.48 2.24 3.49 1.31 3.60 2.60 4.42 4.06 6.70 1.90 14.74 6.09 2.25 1.00 0.73 1.62 4.28 2.34 6.26 1.62 2.55 1.44 20 Ix_SR1 SilentIntronRegion 0 1.04 2.50 2.25 3.50 1.32 3.61 2.61 4.44 4.08 6.74 1.90 14.81 6.12 2.26 1.01 0.73 1.63 4.30 2.35 6.29 1.63 2.56 1.45 21 ER3a ExonRegion 0 0.91 2.03 0.53 1.56 0.00 3.14 1.51 0.49 1.94 3.11 2.21 3.71 4.69 3.25 2.49 2.97 2.36 6.60 3.19 6.08 2.52 0.89 4.20 22 ER3b ExonRegion 0 11.29 13.56 6.13 6.36 0.89 28.12 14.56 8.07 16.47 30.58 15.46 5.77 4.69 17.87 15.47 37.65 22.01 44.96 20.17 43.97 25.71 6.25 37.20 23 ER3c ExonRegion 0 9.48 29.41 21.34 21.79 12.42 21.44 18.72 21.57 22.84 56.40 69.68 22.76 14.94 63.29 24.52 51.88 51.22 102.57 25.10 59.97 102.47 31.75 50.73 24 E3_Da KnownBoundary 1 13.71 29.01 21.88 49.41 7.64 32.82 37.76 19.92 30.96 71.56 86.60 12.60 31.98 91.24 46.85 80.41 65.08 155.37 26.82 88.21 150.74 58.05 27.15 25 ER3d ExonRegion 0 28.66 74.70 45.12 38.50 37.00 49.72 46.57 38.72 38.51 79.94 96.55 60.54 42.72 75.72 60.58 60.44 58.81 102.36 36.76 74.63 98.79 60.52 62.46 26 ER3e ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.73 0.62 0.00 0.00 4.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.06 0.00 0.00 0.00