Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FSD1L Gene 0 10.16 75.42 28.14 23.88 47.91 82.48 68.23 50.03 44.91 53.34 69.27 56.57 107.17 64.39 55.65 21.45 110.61 23.01 19.07 53.86 4.44 14.29 6.93 2 495708 Transcript 0 1.03 22.06 2.65 3.00 5.03 6.68 5.72 7.01 10.62 6.66 1.88 1.75 6.20 2.09 0.77 1.81 8.90 10.34 5.88 15.29 1.14 0.70 0.99 3 374716 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 469022 Transcript 0 0.82 1.49 0.34 1.62 1.16 1.19 12.16 3.75 2.17 1.85 2.64 9.42 14.98 3.00 5.48 3.91 5.42 2.58 3.10 8.24 0.29 0.45 0.25 5 374710 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 481272 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 484973 Transcript 0 0.00 28.48 16.56 6.06 36.08 45.37 63.95 14.70 20.43 28.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57.87 8.38 70.50 0.00 0.00 0.00 8 394926 Transcript 0 0.00 1.87 0.00 1.39 0.00 0.78 1.69 0.28 0.00 0.71 6.70 6.43 3.95 6.09 0.12 2.39 5.33 1.03 0.00 2.48 0.00 3.58 0.00 9 480279 Transcript 0 0.00 0.00 0.00 0.85 2.16 0.00 0.00 0.00 0.65 2.27 2.29 3.15 0.00 7.15 0.00 6.24 0.00 0.93 2.40 0.00 4.32 3.74 10.29 10 394927 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 374707 Transcript 1 1.03 0.49 0.00 0.00 0.00 0.45 3.86 0.00 0.89 0.00 120.19 0.00 25.59 64.55 26.36 33.78 295.26 0.00 0.00 1.55 0.52 0.00 0.00 12 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.55 0.02 0.12 0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 0.12 0.07 0.03 0.12 0.12 0.20 0.00 0.00 13 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.70 0.00 0.00 1.82 0.00 4.86 0.00 0.00 0.00 15 ER1b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 1.83 5.30 0.00 0.00 2.29 0.00 0.00 0.00 0.00 0.00 5.94 3.30 1.85 6.37 4.26 2.20 0.00 0.00 16 ER1c ExonRegion 0 0.00 12.63 0.30 0.02 2.39 17.89 9.99 0.45 0.69 4.17 3.32 0.00 1.23 13.14 1.83 4.90 15.81 3.31 5.92 18.40 3.90 0.26 0.00 17 E1_Ad KnownBoundary 0 0.00 15.13 0.00 0.00 0.00 37.54 9.01 0.00 0.00 5.29 5.26 0.00 6.82 18.72 0.00 7.78 12.62 3.40 0.00 14.45 0.00 0.00 0.00 18 E1_Ae KnownBoundary 0 0.00 6.31 1.83 0.00 4.07 5.68 15.02 2.55 1.79 1.67 13.16 0.00 0.00 0.00 0.00 8.46 13.37 6.18 9.41 22.82 6.12 3.12 0.00 19 ER1d ExonRegion 1 0.00 17.14 1.23 1.36 0.00 31.79 12.23 5.19 7.82 10.54 10.58 0.00 4.69 14.62 0.00 5.94 19.33 2.99 8.65 27.25 4.41 2.08 0.00 20 E1_Af KnownBoundary 0 0.00 24.73 0.00 2.06 0.00 31.57 12.67 7.64 11.83 11.12 4.79 0.00 0.00 8.36 4.45 19.14 21.41 5.80 17.22 22.05 0.00 0.00 0.00 21 ER1e ExonRegion 0 0.00 23.15 1.23 1.99 0.00 33.29 18.43 8.64 11.21 14.12 13.08 0.00 2.16 9.37 2.45 16.23 21.07 7.53 19.36 38.79 4.41 2.72 1.58 22 ER1f ExonRegion 1 3.76 38.28 2.39 4.74 9.23 50.25 35.55 12.14 16.61 19.44 12.13 0.00 0.70 24.00 3.70 21.70 27.15 25.82 15.77 54.20 6.89 5.78 8.81 23 E1_Da KnownBoundary 0 11.26 45.26 5.68 5.79 20.12 41.40 42.09 11.62 14.61 18.02 12.79 0.00 0.00 7.12 4.45 15.21 22.16 45.39 0.00 53.24 11.86 8.08 10.07 24 E1a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 ER1g ExonRegion 0 2.94 14.96 4.76 4.34 11.34 10.60 13.17 8.17 10.61 18.68 18.97 5.06 22.26 8.62 3.49 4.23 23.78 17.19 2.92 35.20 7.99 3.57 2.84 26 E1b_E2a KnownJunction 0 0.00 6.51 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 9.54 0.00 4.10 0.00 0.00 9.41 5.88 0.00 0.00 0.00 27 E1b_E4a KnownJunction 0 0.00 5.92 2.37 6.03 10.10 0.00 16.61 6.98 8.36 17.11 30.96 22.81 8.12 7.12 13.35 0.00 24.96 10.24 4.71 38.09 9.08 2.27 4.35 28 ER2a ExonRegion 0 1.12 1.42 3.88 0.00 1.06 2.23 2.80 3.55 3.42 1.95 7.11 5.68 7.72 5.45 3.51 5.73 7.15 13.86 8.69 9.46 3.49 1.54 0.00 29 E2a_E4a KnownJunction 0 0.00 2.57 0.00 0.00 8.49 2.61 0.00 2.55 3.07 4.89 2.00 0.00 6.82 5.06 8.90 7.69 0.00 16.21 16.19 6.46 0.00 3.12 0.00 30 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.08 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 ER4a ExonRegion 0 0.00 10.17 6.37 6.54 19.27 3.30 10.59 14.52 10.37 21.79 32.09 18.18 22.51 10.72 23.21 10.11 25.09 29.93 15.93 40.43 8.81 11.25 2.94 32 ER4b ExonRegion 1 2.02 15.24 12.11 12.01 12.26 19.41 20.86 26.86 25.34 32.48 41.53 36.40 38.50 40.71 12.82 27.14 26.77 57.22 23.28 75.96 5.18 11.17 3.07 33 E4a_E5a KnownJunction 0 3.41 14.93 14.67 12.92 3.57 32.03 20.23 28.05 46.73 38.14 25.43 25.21 43.50 33.55 22.25 52.64 17.67 70.76 30.97 85.14 0.00 20.39 15.28 34 ER5a ExonRegion 1 0.66 38.22 17.35 10.06 16.54 55.92 54.64 33.48 42.71 36.70 27.49 45.07 69.82 29.68 17.67 20.76 23.86 39.19 13.75 71.36 2.50 12.75 6.16 35 E5a_E6a KnownJunction 1 3.48 71.57 27.97 10.35 19.44 61.21 58.38 42.88 43.98 57.97 32.69 116.14 31.98 37.50 19.66 30.16 33.38 36.31 18.35 82.20 5.37 21.19 0.00 36 ER6a ExonRegion 1 6.70 56.42 17.90 7.80 23.29 46.89 52.17 45.38 38.40 52.21 32.97 90.20 55.82 44.33 17.49 43.07 33.04 42.44 17.86 94.97 5.53 22.08 5.99 37 E6_Da KnownBoundary 0 0.00 2.70 11.95 1.53 0.00 2.61 29.68 7.43 1.24 2.20 7.16 12.00 11.85 2.47 6.30 3.85 9.54 0.00 4.05 6.52 0.00 0.00 0.00 38 E6a_E7a KnownJunction 1 2.89 67.62 11.77 1.33 20.80 51.56 50.12 16.14 27.43 30.92 16.90 49.37 27.76 29.25 4.45 27.00 26.74 34.95 18.45 69.80 0.00 0.00 0.00 39 E6a_E8a KnownJunction 0 0.00 0.00 0.00 1.70 4.33 0.00 0.00 0.00 1.30 4.54 4.58 6.30 0.00 14.30 0.00 12.48 0.00 1.87 4.80 0.00 8.65 7.47 20.57 40 ER6b ExonRegion 1 0.00 2.34 5.09 1.80 1.00 3.49 10.53 4.51 2.48 1.35 1.66 15.60 27.84 4.46 5.92 5.76 5.34 0.76 3.99 13.56 0.89 0.00 1.19 41 E6_Db KnownBoundary 0 0.00 0.00 1.80 0.00 0.00 2.33 6.49 4.44 4.57 0.00 0.00 37.21 6.82 2.47 9.89 12.05 0.00 0.00 0.00 12.59 0.00 0.00 0.00 42 E6_Dc KnownBoundary 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 2.51 1.36 0.00 2.68 7.65 0.00 5.42 0.00 0.00 0.00 0.00 4.80 16.75 0.00 0.00 0.00 43 ER6c ExonRegion 1 0.00 0.00 1.23 1.36 1.19 0.00 6.03 4.99 5.21 0.00 1.93 29.83 7.30 6.50 5.48 8.92 0.00 0.00 3.19 21.51 0.00 0.00 0.00 44 ER6d ExonRegion 0 0.82 1.49 0.34 1.62 1.16 1.19 12.16 3.75 2.17 1.85 2.64 9.42 14.98 3.00 5.48 3.91 5.42 2.58 3.10 8.24 0.29 0.45 0.25 45 E6_Dd NovelBoundary 0 3.41 6.71 1.15 2.06 8.57 0.00 16.96 4.07 3.12 1.37 0.00 0.00 28.73 0.00 4.45 12.73 0.00 4.06 4.33 13.74 2.66 0.00 4.35 46 E7a_E8a KnownJunction 1 0.00 42.82 10.38 11.45 12.48 52.64 50.04 26.53 19.76 25.38 20.48 56.27 40.74 27.78 8.90 28.45 22.35 58.53 43.95 74.59 0.00 0.00 0.00 47 ER7a ExonRegion 1 0.74 60.74 12.04 8.12 20.71 56.37 54.51 29.01 30.77 37.25 22.94 67.20 46.08 31.71 9.71 30.11 31.57 62.66 35.59 88.99 0.00 0.00 0.00 48 ER8a ExonRegion 1 4.55 46.09 16.05 11.58 21.14 48.52 49.59 35.36 38.94 48.28 35.43 96.28 74.19 59.29 12.56 37.64 45.02 69.09 35.17 97.19 12.39 11.36 12.54 49 E8a_E10a KnownJunction 0 3.04 52.29 18.01 13.09 23.01 46.90 52.77 29.74 35.45 43.46 63.02 71.87 80.19 64.81 19.53 37.51 51.15 64.42 38.87 108.21 8.28 10.96 16.05 50 ER9a ExonRegion 1 2.06 0.99 0.00 0.00 0.00 0.89 7.72 0.00 1.79 0.00 161.41 0.00 16.93 97.91 52.72 42.60 405.00 0.00 0.00 3.10 1.05 0.00 0.00 51 E9a_E10a KnownJunction 1 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 78.97 0.00 34.25 31.20 0.00 24.95 185.51 0.00 0.00 0.00 0.00 0.00 0.00 52 ER10a ExonRegion 1 4.78 62.75 18.95 15.89 22.24 53.47 62.85 32.93 41.40 45.85 178.28 97.72 87.47 91.46 25.13 67.39 299.27 85.55 45.59 92.90 10.79 12.83 11.90 53 E10_Da KnownBoundary 1 3.78 79.59 14.81 13.55 21.65 73.54 65.01 35.53 37.24 53.27 336.45 85.53 61.52 156.22 79.49 37.51 734.55 73.83 41.51 103.03 5.87 10.90 21.17 54 ER10b ExonRegion 0 3.84 81.79 19.81 19.26 42.97 76.03 86.31 30.18 47.22 37.21 213.11 109.41 219.48 192.44 83.18 70.50 414.32 58.54 30.15 98.77 7.97 10.67 10.42 55 E10b_E11a KnownJunction 1 9.85 58.81 14.16 24.51 75.55 91.14 70.26 24.64 51.91 38.55 153.04 106.68 361.99 121.55 36.34 59.47 235.06 41.33 22.12 98.05 2.47 17.08 14.51 56 E11_Aa NovelBoundary 0 0.00 2.57 1.39 4.06 4.07 0.00 16.83 10.84 3.33 10.23 0.00 0.00 6.82 0.00 9.27 0.00 4.30 1.70 0.00 23.78 0.00 0.00 0.00 57 ER11a ExonRegion 0 8.32 59.08 26.74 17.08 32.92 66.04 69.98 32.60 53.75 33.36 167.54 97.43 268.23 140.18 72.30 47.28 359.06 50.06 33.95 87.77 12.91 12.25 12.34 58 E11a_E12a KnownJunction 0 6.74 66.83 16.06 9.99 33.70 75.87 91.64 37.01 57.67 29.12 194.68 100.98 336.67 190.18 95.19 58.70 418.33 49.54 24.85 91.15 11.31 25.35 8.19 59 ER12a ExonRegion 0 5.89 77.75 17.27 13.66 45.90 68.10 66.71 22.88 38.88 31.72 206.91 94.58 286.67 176.47 80.61 67.33 413.93 48.44 28.28 92.32 13.34 12.50 11.14 60 E12a_E13a KnownJunction 0 0.00 3.16 0.00 3.26 0.00 2.33 2.03 0.00 0.00 1.24 8.58 0.00 6.17 10.01 0.00 4.19 8.23 0.00 0.00 3.26 0.00 3.06 0.00 61 E12a_E14a KnownJunction 0 0.00 36.38 3.19 2.06 4.16 2.90 0.00 3.70 15.94 2.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.28 4.52 15.21 0.00 0.00 0.00 62 E12a_E15a KnownJunction 0 0.00 3.09 6.27 0.00 4.33 8.01 4.24 2.05 2.46 1.10 218.63 75.62 171.90 184.77 80.10 83.65 471.25 3.77 3.58 0.00 22.86 15.37 8.11 63 E12a_E15b KnownJunction 0 0.00 28.48 16.56 6.06 36.08 45.37 63.95 14.70 20.43 28.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 57.87 8.38 70.50 0.00 0.00 0.00 64 E12a_E18a NovelJunction 0 0.00 5.99 5.50 0.00 0.00 5.17 0.00 0.00 6.11 3.12 38.06 18.31 42.21 27.43 33.75 3.59 56.19 4.81 0.00 2.43 0.00 0.00 0.00 65 I12 Intron 0 0.67 5.65 1.74 2.42 1.27 2.04 12.29 5.31 3.65 3.25 3.37 5.92 23.72 3.65 1.92 2.12 10.73 3.07 4.30 16.54 0.35 0.17 1.40 66 I12_SR1 SilentIntronRegion 0 0.67 5.66 1.74 2.42 1.28 2.04 12.32 5.33 3.66 3.26 3.38 5.94 23.79 3.66 1.93 2.13 10.77 3.08 4.31 16.59 0.35 0.17 1.40 67 E13_Aa NovelBoundary 1 0.00 9.74 0.00 1.76 0.00 8.52 16.34 4.72 3.44 2.53 0.00 6.15 54.54 4.94 0.00 0.00 4.02 2.57 4.80 14.57 0.00 0.00 4.27 68 ER13a ExonRegion 0 0.00 2.46 0.00 0.91 0.00 0.00 3.05 0.84 0.00 0.90 6.79 6.69 5.68 5.86 0.35 2.97 4.10 3.08 0.00 4.19 0.00 4.55 0.00 69 E13a_E15a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.74 12.60 0.00 2.41 0.00 0.00 3.65 0.00 0.00 0.00 0.00 3.12 0.00 70 ER14a ExonRegion 0 3.08 29.81 4.76 6.94 10.37 17.12 17.05 17.34 15.91 17.28 5.65 5.24 18.60 6.28 2.30 5.32 26.63 19.71 13.02 30.53 3.20 2.10 2.96 71 E14_Da NovelBoundary 0 7.56 40.12 8.75 12.55 7.89 10.33 8.39 36.88 13.60 11.74 7.58 24.01 13.47 2.30 0.00 11.36 39.36 55.38 8.66 53.88 8.71 7.96 7.51 72 I14 Intron 0 2.95 32.33 7.54 9.40 12.60 7.94 19.44 22.91 11.89 16.46 4.20 3.67 16.28 3.84 9.16 4.09 11.13 7.92 6.04 18.59 2.29 2.16 2.99 73 I14_SR1 SilentIntronRegion 0 2.96 32.37 7.55 9.41 12.61 7.95 19.46 22.94 11.91 16.48 4.21 3.67 16.29 3.84 9.17 4.10 11.14 7.93 6.05 18.61 2.29 2.16 2.99 74 ER15a ExonRegion 1 0.00 11.18 7.96 3.41 14.05 21.55 23.83 12.96 11.12 12.33 216.00 108.24 196.98 191.24 68.90 69.84 438.19 26.33 11.95 18.09 19.83 23.96 8.81 75 ER15b ExonRegion 0 2.92 52.68 19.26 7.15 24.22 49.42 63.65 27.25 26.97 31.36 155.95 86.54 212.50 173.76 72.62 58.71 336.62 65.26 21.74 77.93 14.79 16.15 21.34 76 E15a_E16a KnownJunction 1 9.56 68.08 15.73 9.89 49.07 60.14 90.67 19.47 26.36 44.19 206.16 57.47 297.06 177.35 157.49 65.37 447.69 65.79 25.88 104.38 11.86 5.88 12.72 77 E15a_E18a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.34 9.48 0.00 0.00 0.00 0.00 0.00 17.11 1.87 3.58 0.00 0.00 0.00 0.00 78 E16_Aa NovelBoundary 0 3.78 12.76 1.77 4.83 8.66 0.00 33.21 11.54 5.76 5.72 2.68 0.00 13.31 4.89 5.19 10.68 17.95 7.59 7.53 6.33 0.00 0.00 8.28 79 ER16a ExonRegion 0 6.38 64.69 18.56 14.05 33.66 61.22 60.05 36.61 39.42 48.55 184.14 114.77 217.42 167.93 74.85 56.73 371.22 65.75 26.54 102.91 12.77 13.99 19.09 80 E16_Da NovelBoundary 0 0.00 19.80 8.87 1.90 0.00 0.00 8.39 5.59 15.48 6.82 7.21 0.00 0.00 0.00 14.71 0.00 16.08 4.27 8.75 6.01 3.15 5.94 12.29 81 E16a_E17a KnownJunction 1 6.52 42.43 20.87 18.41 20.71 44.29 65.32 36.84 40.86 59.20 145.93 89.73 141.39 110.37 35.73 36.32 238.34 57.91 21.37 81.05 6.30 6.25 7.94 82 E16a_E18a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.03 0.00 0.00 1.10 7.74 0.00 0.00 0.00 4.45 0.00 4.11 0.00 0.00 0.00 0.00 0.00 0.00 83 I16_AR2 ActiveIntronRegion 0 2.12 7.20 1.33 6.81 5.13 0.76 1.05 3.46 5.51 4.59 7.17 2.53 9.38 1.08 2.78 2.97 18.71 4.47 3.19 9.84 5.51 8.59 8.20 84 I16_AR3 ActiveIntronRegion 0 1.51 6.10 1.23 5.45 5.35 3.67 2.65 3.46 4.94 4.92 8.28 0.00 4.02 1.62 4.56 0.42 15.56 5.54 0.46 10.94 4.41 8.63 5.87 85 ER17a ExonRegion 0 7.85 52.60 12.54 14.53 27.42 76.24 56.62 31.33 41.99 47.49 162.86 91.99 185.18 134.77 62.52 35.47 261.62 50.87 17.25 84.32 12.53 15.36 15.54 86 E17a_E18a KnownJunction 1 0.00 76.10 12.24 22.27 23.43 75.47 60.55 28.79 45.92 45.80 140.88 151.40 191.38 133.09 44.87 24.44 246.10 57.41 12.33 75.23 17.11 20.94 24.67 87 E18_Aa NovelBoundary 0 3.78 2.83 1.39 5.33 0.00 0.00 8.30 3.90 9.14 9.11 12.69 5.55 18.99 4.24 0.00 7.43 24.96 6.14 3.76 25.31 5.62 11.08 14.34 88 ER18a ExonRegion 0 10.09 69.85 17.32 20.77 31.43 71.13 58.93 37.77 56.80 52.51 238.19 79.66 194.08 174.49 72.40 62.96 426.07 71.49 28.55 95.73 25.05 21.58 20.76 89 E18_Da KnownBoundary 1 9.19 79.26 14.46 16.28 16.30 90.63 87.04 44.03 46.70 40.29 285.76 43.06 156.16 136.91 53.90 58.36 433.75 49.58 23.15 95.43 23.72 17.70 0.00 90 E18_Db KnownBoundary 1 10.00 68.28 18.54 17.01 45.93 118.85 91.73 14.58 68.52 40.91 247.64 44.56 86.68 124.08 59.83 41.87 451.33 55.63 81.04 76.57 33.67 17.94 11.95 91 ER18b ExonRegion 1 10.11 75.69 21.47 21.76 45.39 104.19 86.60 39.75 74.34 51.40 328.16 53.56 115.51 138.59 59.85 64.95 518.73 76.92 69.13 99.13 36.81 20.14 6.63 92 ER18c ExonRegion 0 6.44 76.47 21.13 22.28 49.81 93.95 84.23 41.26 58.32 52.90 172.95 79.73 148.91 135.21 78.29 43.11 255.69 39.14 33.27 90.24 9.11 22.97 9.75 93 E18_Dc KnownBoundary 0 12.74 118.53 14.37 17.51 54.16 83.47 133.28 54.63 49.65 49.00 106.13 93.18 130.02 101.30 108.29 29.74 146.80 27.19 8.56 75.49 2.84 20.39 3.59 94 ER18d ExonRegion 0 15.47 109.52 42.90 36.08 72.71 121.86 94.98 74.38 62.56 77.39 68.49 68.59 129.62 68.54 76.93 19.00 95.08 19.23 22.27 59.62 3.28 19.71 7.65