Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SLC44A1 Gene 0 45.89 59.12 30.31 30.68 44.42 27.32 45.10 40.48 24.63 43.57 47.80 112.77 189.53 52.10 100.52 61.98 38.80 29.38 16.09 23.94 105.32 317.86 175.26 2 374720 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 470972 Transcript 0 27.19 45.52 31.52 41.55 58.83 22.94 61.47 52.21 17.79 41.85 12.90 49.07 197.06 11.95 45.24 45.12 26.46 8.46 3.86 34.00 40.40 407.26 209.31 4 374723 Transcript 0 0.00 0.00 0.00 0.00 8.57 0.00 0.00 0.00 0.00 6.93 0.00 0.00 16.07 4.77 6.06 8.37 0.00 0.00 3.86 0.00 3.03 16.23 4.35 5 374724 Transcript 0 12.70 2.16 1.30 1.93 6.63 8.05 2.39 10.25 2.66 4.04 1.26 4.23 0.69 5.56 33.18 0.35 0.48 0.13 0.27 0.24 8.48 21.21 3.47 6 343170 Transcript 0 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.58 0.72 0.57 0.00 0.00 0.00 0.00 1.21 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 7 361080 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 ER1a ExonRegion 0 0.51 0.42 1.02 0.09 0.20 3.82 3.09 1.16 1.41 2.83 16.50 6.04 21.96 17.36 12.47 21.13 14.02 12.03 3.19 5.84 84.75 32.00 77.62 9 E1a_E5a KnownJunction 1 3.56 2.50 9.17 3.43 3.74 9.65 6.05 16.88 13.28 24.85 52.80 6.30 120.93 63.28 43.51 67.42 49.28 48.71 18.82 20.84 122.07 159.94 226.21 10 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.31 0.35 0.79 0.00 1.48 1.85 0.81 2.40 0.00 0.00 0.39 3.01 3.22 3.20 13 ER5a ExonRegion 1 5.13 11.34 16.35 12.39 9.19 12.63 13.11 20.09 12.49 37.82 92.35 18.71 97.24 97.05 62.83 78.13 75.96 49.70 6.83 30.64 247.11 345.22 221.75 14 E5a_E6a KnownJunction 1 3.78 5.46 19.19 19.21 18.51 17.60 42.48 23.78 15.80 52.11 79.39 47.42 133.11 116.66 52.66 100.14 52.73 65.83 3.58 29.59 314.63 299.86 208.03 15 E5a_E7a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.31 4.86 0.00 4.63 0.00 0.00 12.07 0.00 3.50 0.00 3.61 0.00 0.00 8.96 10.96 7.77 16 ER6a ExonRegion 0 15.93 20.36 22.57 19.85 15.96 21.95 38.64 29.81 32.21 58.29 146.62 120.77 242.77 149.35 100.31 159.77 131.62 81.80 27.35 48.82 391.24 532.67 354.08 17 E6a_E7a KnownJunction 1 7.04 19.34 37.73 32.40 19.69 7.67 28.48 37.79 42.51 80.48 162.25 167.90 221.74 182.59 122.38 197.90 118.28 96.67 56.75 57.78 463.02 926.22 578.34 18 ER7a ExonRegion 0 9.50 32.61 27.36 29.82 26.76 32.57 46.16 31.78 46.89 75.06 173.93 217.96 375.10 149.38 122.51 217.49 149.65 121.99 27.78 53.13 448.45 740.73 580.90 19 E7a_E8a KnownJunction 0 24.15 52.16 32.79 35.33 36.67 62.12 64.04 48.75 57.44 90.61 172.52 251.33 530.97 187.59 135.24 243.78 167.74 115.61 25.51 65.64 501.01 836.63 676.59 20 ER8a ExonRegion 0 26.07 49.52 24.72 31.93 49.27 49.01 74.48 53.42 54.42 91.39 204.87 291.92 502.78 202.62 154.29 268.69 152.30 114.62 45.88 66.73 531.68 913.34 647.53 21 E8a_E9a KnownJunction 0 16.60 51.83 28.98 31.16 31.75 43.78 72.78 56.48 52.86 90.58 167.31 234.83 454.68 167.76 178.13 195.25 112.58 94.31 20.89 49.86 503.18 822.24 589.01 22 I8_AR3 ActiveIntronRegion 0 11.64 6.83 1.23 6.91 3.44 3.67 1.70 10.00 1.41 12.04 0.00 0.00 8.71 0.00 11.61 2.97 1.65 11.48 1.37 4.26 0.00 2.08 3.36 23 I8_AR4 ActiveIntronRegion 0 12.09 12.49 2.04 3.05 8.54 1.05 1.39 9.79 1.24 13.33 0.00 8.66 11.39 0.77 4.84 2.97 0.00 13.99 9.56 3.04 1.26 0.79 2.66 24 I8_AR6 ActiveIntronRegion 0 6.35 11.86 2.45 1.36 8.03 0.00 3.53 5.19 1.24 14.91 0.00 12.99 9.38 1.62 2.90 0.00 0.00 14.78 12.74 0.35 2.20 2.08 5.87 25 I8_SR2 SilentIntronRegion 0 16.53 5.71 4.46 4.04 7.61 3.90 6.37 7.95 3.06 3.83 0.71 1.60 11.21 0.30 8.30 7.58 3.60 4.77 2.31 4.47 1.28 3.27 7.80 26 I8_AR7 ActiveIntronRegion 0 27.43 9.94 8.08 9.38 10.58 2.31 6.31 11.31 1.59 3.63 1.66 6.17 8.01 0.77 10.91 2.07 1.42 3.76 4.72 3.73 0.47 3.73 9.49 27 I8_SR4 SilentIntronRegion 0 11.28 3.33 3.10 3.94 6.16 1.33 6.17 6.71 3.12 3.83 0.82 5.32 13.86 0.97 10.49 5.04 1.80 1.95 1.93 1.93 0.80 1.89 3.02 28 ER9a ExonRegion 0 31.39 60.24 19.14 32.83 53.86 49.21 75.30 43.13 47.44 76.85 154.60 339.53 558.53 175.57 148.75 230.22 127.26 115.04 25.65 58.06 403.84 816.81 618.54 29 E9a_E10a KnownJunction 0 25.12 76.24 27.59 34.26 93.80 48.21 83.42 56.23 55.76 96.09 184.84 287.64 628.37 221.73 136.10 231.90 156.62 108.69 16.75 37.52 289.98 1004.47 634.59 30 ER10a ExonRegion 0 23.75 41.89 19.88 33.24 59.94 57.87 92.54 40.64 45.59 93.19 169.24 283.87 636.23 183.07 160.50 240.71 144.43 100.07 38.15 52.10 331.78 821.16 622.27 31 E10a_E11a KnownJunction 0 23.41 40.91 19.16 38.62 43.12 81.60 80.69 37.13 38.17 81.26 137.98 245.63 552.89 164.87 173.44 202.94 109.86 78.10 57.60 50.88 343.48 662.55 614.53 32 ER11a ExonRegion 0 34.67 76.48 25.36 30.61 64.43 71.06 68.76 43.17 61.24 76.84 197.79 326.01 610.68 187.17 186.78 263.46 158.23 131.39 40.16 58.24 496.23 879.22 653.95 33 E11a_E12a KnownJunction 0 51.12 103.40 30.37 33.10 59.34 81.03 83.78 39.64 57.49 58.69 197.68 323.96 869.42 220.67 246.25 216.01 154.00 147.08 44.99 47.87 565.76 874.17 660.88 34 ER12a ExonRegion 0 38.69 58.89 30.63 32.42 53.97 60.47 60.66 45.71 51.58 63.39 173.88 296.30 542.59 202.95 175.63 263.96 147.82 124.91 31.22 57.08 544.26 661.97 635.56 35 E12a_E13a KnownJunction 0 41.19 59.66 37.91 30.97 61.80 73.93 102.06 52.62 38.05 54.10 105.97 228.67 517.17 154.45 145.25 153.89 93.50 74.91 13.55 41.99 402.91 430.41 385.41 36 ER13a ExonRegion 0 46.98 70.04 28.65 37.87 78.56 59.38 82.34 49.10 43.97 69.39 124.32 242.40 525.82 157.30 142.88 179.31 108.55 82.81 34.58 43.59 337.05 562.59 494.06 37 E13a_E14a KnownJunction 0 85.94 67.29 40.83 61.03 99.15 21.46 70.66 74.10 58.36 86.31 147.41 216.67 515.88 161.52 180.11 206.36 122.21 79.88 27.39 36.94 213.13 760.28 479.31 38 ER14a ExonRegion 0 74.31 101.81 39.64 61.95 86.48 78.04 102.16 49.27 48.36 93.91 157.04 231.47 525.82 135.59 195.34 211.65 130.84 98.84 45.26 62.27 235.74 787.05 518.79 39 E14a_E15a KnownJunction 0 92.46 124.12 38.38 64.69 86.33 82.74 117.16 58.53 40.80 97.99 201.84 259.43 625.12 176.82 342.30 240.28 139.32 104.17 50.54 75.17 321.43 924.56 639.54 40 ER15a ExonRegion 0 74.36 102.82 51.35 71.37 97.73 61.19 93.54 58.62 45.89 99.97 182.82 313.37 622.99 187.84 258.66 234.23 153.14 103.98 50.78 69.38 412.78 918.31 592.71 41 E15a_E16a KnownJunction 0 44.53 78.14 48.79 46.41 83.11 59.45 93.54 59.06 48.93 74.68 96.97 278.04 591.03 160.75 203.85 134.92 151.94 80.25 46.59 65.20 389.20 668.98 483.75 42 ER16a ExonRegion 0 65.93 84.13 45.63 53.57 89.13 75.19 78.70 64.52 40.87 78.36 145.05 264.19 530.45 167.78 255.02 185.15 116.20 108.33 40.97 53.42 492.05 808.00 544.00 43 E16a_E17a KnownJunction 0 104.98 91.10 44.53 39.92 70.71 40.43 95.70 52.41 36.28 71.99 145.46 275.49 365.07 206.96 268.50 195.76 127.72 92.07 33.32 34.07 515.66 773.26 585.33 44 ER17a ExonRegion 0 66.23 82.92 46.68 41.69 74.03 70.32 81.55 57.91 37.11 68.28 146.11 218.37 423.63 166.68 211.60 178.48 98.92 93.93 31.29 41.06 358.48 685.21 499.02 45 E17a_E18a KnownJunction 0 72.90 126.10 59.34 58.23 139.05 74.16 88.86 61.04 40.02 59.34 150.04 164.15 485.20 146.51 231.41 187.13 96.31 109.15 41.98 39.44 267.50 704.55 539.49 46 E18_Aa NovelBoundary 0 9.48 9.14 5.71 8.79 19.95 0.00 10.20 0.00 1.30 5.80 5.32 36.01 6.33 0.00 0.00 11.45 3.55 2.36 0.00 0.00 5.44 8.51 4.27 47 ER18a ExonRegion 0 63.94 87.69 50.01 53.10 67.03 43.60 44.26 59.43 44.72 74.44 131.56 201.88 480.41 173.48 237.44 152.39 102.29 90.08 48.33 31.13 316.03 811.13 484.11 48 E18_Da NovelBoundary 0 26.45 61.57 7.69 23.47 11.71 11.24 8.57 22.30 8.16 13.38 7.48 6.15 32.79 6.71 9.64 7.95 4.58 35.48 0.00 8.63 27.43 34.66 19.97 49 E18a_E20a KnownJunction 0 30.45 96.76 37.82 52.47 15.53 29.64 17.05 78.57 47.51 55.98 135.14 194.01 323.03 169.17 276.66 140.31 103.69 69.14 16.94 25.76 256.81 655.50 374.40 50 E18a_E20c KnownJunction 0 0.00 0.00 0.00 0.00 8.57 0.00 0.00 0.00 0.00 6.93 0.00 0.00 16.07 4.77 6.06 8.37 0.00 0.00 3.86 0.00 3.03 16.23 4.35 51 E18a_E21a KnownJunction 0 19.48 2.57 1.12 2.06 8.23 11.87 0.00 16.92 2.84 6.23 2.37 5.85 0.00 9.83 56.62 0.00 0.00 0.00 0.00 0.00 13.78 34.11 4.35 52 I18 Intron 0 13.43 18.22 8.40 12.13 15.30 8.67 14.66 13.78 9.84 10.62 8.17 11.56 22.34 6.79 17.43 11.47 6.98 10.18 1.58 6.88 17.81 27.21 22.29 53 I18_AR1 ActiveIntronRegion 0 14.41 5.84 5.22 4.09 2.68 0.00 0.09 2.96 0.04 3.11 4.30 8.24 15.73 1.31 1.50 2.59 7.13 0.00 0.00 0.00 5.97 8.47 4.64 54 I18_AR2 ActiveIntronRegion 0 13.39 19.34 8.71 12.86 16.45 9.45 15.98 14.76 10.73 11.31 8.54 11.89 23.01 7.28 18.84 12.28 6.99 11.10 1.73 7.50 18.91 28.92 23.89 55 ER19a ExonRegion 0 0.00 0.00 0.41 0.00 0.00 0.00 0.00 0.58 0.72 0.57 0.00 0.00 0.00 0.00 1.21 0.00 0.00 0.00 0.00 0.00 0.00 1.04 0.00 56 I19 Intron 0 24.06 25.70 11.12 15.32 23.60 6.17 17.69 17.80 8.87 8.55 1.93 16.02 47.01 5.59 14.80 6.21 5.70 3.35 2.61 5.80 2.80 30.31 10.41 57 I19_AR1 ActiveIntronRegion 0 25.91 27.89 11.67 16.07 24.09 6.99 19.25 19.26 8.82 9.30 1.51 16.92 51.70 5.90 14.35 6.98 5.92 3.85 2.04 6.37 2.97 31.06 10.87 58 I19_AR2 ActiveIntronRegion 0 17.07 16.81 13.81 17.44 31.57 5.26 6.71 18.09 12.43 11.47 3.87 16.16 21.26 3.25 15.67 0.00 2.64 1.85 2.12 7.38 2.20 38.20 10.18 59 I19_AR3 ActiveIntronRegion 1 15.34 16.52 12.25 15.50 29.10 0.00 9.93 13.18 12.35 9.46 6.52 11.36 24.04 3.25 23.94 1.11 4.54 0.23 9.16 3.72 0.00 36.20 14.68 60 I19_AR4 ActiveIntronRegion 0 19.05 20.34 11.03 11.93 24.53 0.00 14.56 12.10 10.81 2.48 6.93 12.99 28.92 5.96 24.90 2.97 6.60 0.00 9.56 2.13 2.20 35.07 11.26 61 Ix Intron 0 6.63 21.24 8.35 15.80 13.77 6.23 13.66 16.68 8.12 10.58 4.19 13.27 29.67 5.28 10.25 9.47 4.40 7.20 3.08 7.78 7.13 28.08 11.35 62 Ix_SR1 SilentIntronRegion 0 7.12 21.30 10.26 15.46 12.77 7.08 11.96 19.15 9.52 11.60 4.36 13.42 26.62 5.70 9.87 8.80 3.31 8.59 3.58 7.69 9.26 26.62 10.66 63 Ix_AR1 ActiveIntronRegion 0 5.44 18.06 12.92 22.46 8.86 11.05 15.64 30.29 6.32 10.13 2.39 16.49 37.97 7.31 6.08 12.88 5.27 9.06 2.35 6.84 5.14 33.44 7.62 64 Ix_AR2 ActiveIntronRegion 0 7.27 21.78 6.98 22.06 14.95 6.40 18.23 16.54 7.55 10.67 1.71 11.16 35.35 3.59 10.82 9.47 5.66 3.64 4.70 6.65 2.39 31.22 11.96 65 Ix_SR2 SilentIntronRegion 0 5.90 22.92 5.39 11.99 16.32 4.93 14.42 12.07 6.47 9.32 5.61 13.64 32.40 5.45 12.09 10.25 5.61 7.06 1.06 8.53 6.75 28.70 12.64 66 E20_Aa NovelBoundary 0 16.97 29.86 12.15 13.35 8.06 0.00 8.13 14.42 2.58 7.63 10.74 20.26 36.20 17.25 14.83 16.83 3.83 11.81 0.00 21.35 9.20 38.21 32.52 67 ER20a ExonRegion 0 25.29 74.71 35.23 44.83 42.81 29.12 45.31 61.29 42.76 54.12 105.37 204.80 272.76 122.75 165.64 130.11 97.77 51.76 36.17 37.99 252.18 659.24 396.79 68 E20_Da KnownBoundary 0 32.30 132.15 24.81 37.66 78.61 67.06 80.38 46.29 27.26 63.10 66.81 297.10 275.63 75.05 156.75 101.85 89.85 31.59 37.46 44.93 175.08 713.49 347.26 69 E20a_E20b KnownJunction 0 27.19 45.52 31.52 41.55 58.83 22.94 61.47 52.21 17.79 41.85 12.90 49.07 197.06 11.95 45.24 45.12 26.46 8.46 3.86 34.00 40.40 407.26 209.31 70 ER20b ExonRegion 0 22.42 72.15 14.29 26.67 69.74 35.49 65.49 31.53 13.32 34.02 46.12 192.14 322.31 85.58 163.20 74.87 46.09 16.26 18.51 22.68 94.73 512.49 232.81 71 E20_Ab KnownBoundary 1 70.90 168.92 35.24 65.96 227.25 62.52 183.50 74.96 30.58 66.51 69.12 309.55 703.20 164.58 347.98 154.57 88.73 18.90 25.69 55.29 145.49 1259.21 560.66 72 ER20c ExonRegion 1 84.88 102.74 61.25 68.97 101.95 52.85 105.70 82.89 40.96 96.26 78.38 360.58 642.08 112.23 192.30 111.97 68.06 23.04 21.34 36.87 90.12 877.18 302.63 73 E20_Ac KnownBoundary 0 174.40 118.07 83.59 52.24 152.04 75.58 227.88 85.35 47.05 99.01 151.41 207.22 642.81 166.46 173.31 195.16 111.83 50.12 43.39 40.91 235.87 710.92 534.71 74 ER20d ExonRegion 1 178.19 181.88 112.38 72.66 109.13 50.14 96.38 106.27 42.93 99.69 99.00 270.67 415.50 93.67 368.78 107.09 68.04 34.09 26.73 40.31 137.02 839.44 311.29 75 E20_Db KnownBoundary 0 32.67 34.80 8.25 14.78 40.32 14.14 18.24 37.01 19.39 31.08 7.48 41.71 56.00 5.36 32.39 8.72 4.77 9.91 13.46 2.43 13.47 51.50 35.60 76 ER20e ExonRegion 0 17.97 32.69 11.38 18.88 24.14 14.12 25.06 24.37 16.31 21.68 4.41 20.91 19.78 5.64 15.53 8.69 5.62 10.67 9.64 13.67 19.66 43.40 37.34 77 E20_Dc NovelBoundary 0 6.59 23.81 0.00 5.89 4.33 0.00 13.65 2.46 4.63 2.93 0.00 5.70 0.00 0.00 4.45 0.00 0.00 0.00 8.75 2.68 0.00 6.25 0.00 78 ER21a ExonRegion 0 5.91 1.75 1.48 1.79 5.03 4.24 4.77 3.58 2.47 1.85 0.15 2.61 1.37 1.29 9.75 0.69 0.95 0.26 0.55 0.49 3.19 8.30 2.58