Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 DNAJC25 Gene 0 41.16 54.54 36.35 37.66 43.12 19.64 28.41 34.85 29.42 32.16 34.92 84.78 45.10 28.03 32.67 24.74 20.18 12.60 17.53 35.50 10.86 53.75 19.40 2 313525 Transcript 0 4.93 3.16 5.11 1.03 0.00 2.36 1.06 2.24 0.90 2.28 3.41 0.00 6.66 7.53 10.14 4.66 3.80 5.17 0.71 3.20 5.24 3.58 6.15 3 463589 Transcript 0 2.14 5.47 4.50 2.87 3.62 3.04 4.12 1.68 1.61 1.52 6.86 6.89 4.85 1.99 2.12 3.79 3.03 2.40 1.46 2.76 1.87 1.56 1.49 4 447096 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 436202 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 ER1a ExonRegion 0 0.00 0.00 0.82 0.00 0.00 0.00 0.00 0.00 0.00 0.76 1.93 0.00 0.00 2.53 0.00 4.95 3.30 1.64 1.42 3.78 1.96 0.00 0.00 7 ER1b ExonRegion 0 0.94 0.00 1.23 0.00 0.00 0.00 0.00 0.00 0.00 1.15 5.37 0.00 0.00 4.33 0.00 5.94 7.70 1.85 5.31 4.26 2.20 0.00 1.63 8 ER1c ExonRegion 0 1.87 2.20 3.88 0.80 0.39 3.48 1.32 3.09 1.73 3.97 7.28 0.56 0.71 8.97 8.79 4.88 7.83 4.41 2.88 7.11 5.17 5.30 5.89 9 E1a_E2a KnownJunction 0 0.00 3.03 6.98 0.00 0.00 2.90 0.00 0.00 0.00 0.00 6.74 0.00 0.00 0.00 0.00 0.00 3.46 0.00 0.00 0.00 0.00 0.00 0.00 10 E1a_E2b KnownJunction 0 0.00 7.76 3.08 4.13 8.66 11.81 5.39 9.61 7.47 5.18 10.00 0.00 6.82 11.54 9.27 3.08 11.41 7.75 0.00 5.75 5.25 2.63 0.00 11 E1a_E3b KnownJunction 0 9.85 6.31 9.40 2.06 0.00 4.71 2.12 4.48 1.79 3.79 4.90 0.00 13.31 12.54 20.27 4.36 4.30 8.71 0.00 2.62 8.53 7.16 12.29 12 Ix Intron 0 5.16 5.20 4.31 7.06 8.76 3.07 8.91 6.20 8.52 8.43 20.11 32.44 24.98 15.69 5.22 12.87 14.71 9.37 9.08 30.69 6.26 11.02 10.23 13 Ix_SR1 SilentIntronRegion 0 2.57 1.45 1.69 0.00 0.61 3.34 1.61 0.00 0.66 0.61 5.09 0.00 2.35 11.74 4.59 6.44 1.26 7.68 5.12 13.70 11.39 1.17 6.29 14 Ix_AR1 ActiveIntronRegion 0 2.19 1.89 0.55 3.26 1.02 0.00 0.55 4.03 2.71 0.46 5.13 0.00 0.00 10.21 12.36 4.60 7.66 7.11 0.68 19.98 14.61 0.42 4.40 15 Ix_SR2 SilentIntronRegion 0 3.02 2.03 2.98 3.31 0.00 0.00 1.32 4.69 4.06 1.64 6.63 6.80 0.00 12.53 11.61 2.97 16.03 11.61 0.00 20.67 9.13 2.08 0.00 16 Ix_AR2 ActiveIntronRegion 0 3.76 3.99 2.49 3.62 3.76 1.93 4.00 1.89 3.46 2.65 17.62 13.09 21.27 12.95 6.99 7.71 14.44 9.97 7.84 32.02 5.42 2.42 8.26 17 Ix_SR3 SilentIntronRegion 0 2.15 2.32 3.47 4.53 3.78 2.73 6.54 3.29 7.71 5.82 15.13 26.37 18.44 16.16 4.47 13.17 15.87 9.74 8.08 26.09 7.51 8.61 9.03 18 Ix_AR3 ActiveIntronRegion 0 2.12 0.00 0.54 5.45 0.00 1.83 14.71 0.00 9.88 4.59 24.70 39.45 37.52 16.60 5.80 18.49 16.50 14.17 11.68 48.46 18.85 15.51 16.97 19 Ix_AR4 ActiveIntronRegion 0 2.35 1.14 4.37 4.42 2.25 0.02 7.86 3.31 7.23 5.46 36.27 21.65 31.43 18.91 2.63 17.33 19.93 11.98 15.15 38.72 12.65 10.90 9.88 20 Ix_AR5 ActiveIntronRegion 0 0.00 7.68 2.45 2.04 4.01 1.63 7.28 6.34 9.88 7.01 32.75 27.18 22.93 16.78 2.58 26.75 19.62 17.76 3.72 29.55 23.26 11.92 16.80 21 Ix_AR6 ActiveIntronRegion 0 0.00 6.39 2.45 2.73 10.70 1.83 5.11 5.19 12.35 8.03 37.00 19.79 47.57 15.55 0.41 20.80 18.39 15.57 12.74 37.08 20.15 10.42 12.59 22 Ix_AR7 ActiveIntronRegion 0 1.82 7.63 1.33 2.84 5.05 1.11 4.08 3.99 5.50 7.10 17.08 21.04 15.98 14.67 2.44 10.67 13.69 9.54 8.70 30.67 10.31 10.53 8.98 23 Ix_AR8 ActiveIntronRegion 0 4.23 8.59 1.37 2.37 6.40 3.93 3.72 4.63 4.94 2.55 8.54 34.74 26.24 7.93 0.93 6.30 5.74 1.08 12.17 13.88 2.07 6.95 11.89 24 Ix_AR9 ActiveIntronRegion 0 2.72 4.07 2.45 0.97 13.38 5.50 5.67 0.49 3.18 3.44 15.46 25.98 15.41 9.74 2.90 5.94 6.60 1.85 14.56 17.02 6.61 4.17 8.81 25 Ix_AR10 ActiveIntronRegion 0 2.12 3.56 2.45 0.00 12.44 0.00 4.50 0.00 1.30 3.44 8.99 14.29 13.84 9.50 0.87 5.94 4.62 1.66 9.24 11.17 6.61 4.17 8.22 26 Ix_SR4 SilentIntronRegion 0 5.96 6.02 3.84 8.02 10.97 3.27 11.00 8.10 9.56 10.46 23.59 38.20 28.29 16.68 5.07 14.00 15.26 10.18 9.71 36.46 5.55 12.97 12.14 27 Ix_AR11 ActiveIntronRegion 0 11.57 11.39 14.10 17.09 20.90 6.74 14.31 10.29 11.15 12.64 25.53 57.14 44.41 14.30 8.83 13.12 15.62 5.37 9.82 30.07 2.75 17.38 10.47 28 Ix_SR5 SilentIntronRegion 0 6.11 4.57 8.62 13.55 9.44 2.35 7.64 12.35 22.21 14.15 25.29 42.59 28.85 16.74 9.32 15.25 10.59 12.02 13.28 26.39 3.53 21.25 7.48 29 Ix_SR6 SilentIntronRegion 0 21.29 11.86 5.17 12.20 23.50 4.63 17.62 8.81 5.66 12.91 11.23 22.20 28.74 11.03 7.18 9.39 7.88 4.39 5.49 5.39 2.20 4.17 2.79 30 Ix_AR14 ActiveIntronRegion 0 18.10 4.59 5.25 5.45 13.31 1.20 8.37 5.43 2.30 8.98 20.84 12.54 21.95 14.83 5.21 7.28 13.54 3.93 11.64 8.32 0.03 8.23 2.15 31 E2_Aa NovelBoundary 0 22.23 16.71 7.72 11.65 8.06 28.96 3.71 6.61 10.50 5.86 17.27 31.06 12.99 14.48 4.94 32.30 14.03 1.87 9.32 9.01 0.00 17.57 4.35 32 E2_Ab NovelBoundary 0 2.89 15.52 14.49 22.04 26.83 15.22 29.15 11.46 14.47 15.47 23.85 29.71 20.45 9.65 15.08 21.19 12.44 9.62 13.46 14.51 15.63 5.39 3.76 33 ER2a ExonRegion 0 5.46 9.10 10.45 9.76 12.82 8.78 14.01 6.10 4.68 3.44 18.01 7.98 12.84 5.98 5.19 7.66 8.34 8.95 5.53 5.94 6.96 3.73 3.40 34 ER2b ExonRegion 0 39.28 28.14 28.55 25.22 36.92 17.67 31.58 35.95 31.84 29.07 70.00 46.05 36.67 39.54 27.64 40.46 31.57 30.87 24.42 44.03 18.23 30.93 24.76 35 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36 E2a_E3b KnownJunction 0 49.93 37.36 22.03 29.97 46.52 32.94 29.94 31.05 49.16 47.01 67.33 57.02 26.78 40.56 17.80 50.50 15.24 38.51 21.27 42.19 0.00 36.07 29.62 37 ER3a ExonRegion 0 3.09 9.75 0.58 1.71 1.66 0.47 2.46 0.63 1.76 2.66 2.70 19.59 6.55 1.96 3.27 7.50 0.31 0.65 0.30 5.10 0.52 2.51 2.56 38 E3_Ab KnownBoundary 0 16.74 9.27 0.00 1.70 4.33 0.00 4.50 0.00 3.10 4.62 0.00 16.51 0.00 0.00 8.90 7.01 0.00 0.00 0.00 2.81 2.47 0.00 3.50 39 ER3b ExonRegion 0 48.51 45.35 40.62 31.55 34.33 25.50 29.07 49.61 46.06 49.81 67.73 101.74 49.74 58.08 50.94 47.14 33.55 38.06 22.34 57.15 26.14 57.68 27.51 40 E3a_E4a KnownJunction 0 63.79 56.04 40.12 44.85 41.60 15.84 23.85 43.99 41.09 45.48 76.02 117.49 56.17 60.22 56.49 80.66 41.80 56.54 27.48 87.57 26.13 72.32 46.35 41 ER4a ExonRegion 0 81.30 92.03 50.21 48.10 72.28 30.96 48.24 40.62 38.44 37.80 54.24 113.90 84.80 56.32 54.90 40.35 33.48 20.03 21.07 56.15 20.83 85.66 38.15 42 E4a_E5a KnownJunction 1 98.24 81.50 94.67 98.69 119.44 58.15 97.73 81.74 63.48 57.59 52.86 155.90 148.85 53.15 64.28 44.35 36.37 25.95 22.97 74.34 27.74 97.54 48.06 43 E5_Aa NovelBoundary 0 3.78 0.00 11.41 0.00 25.89 4.54 4.06 3.66 0.00 2.66 0.00 0.00 7.14 11.77 4.45 0.00 0.00 2.11 0.00 0.00 0.00 0.00 0.00 44 ER5a ExonRegion 0 40.52 66.28 44.75 50.89 50.58 21.38 30.46 43.07 34.19 39.48 27.75 110.54 47.80 19.36 32.72 20.61 16.57 6.56 20.04 34.57 6.30 64.52 15.81 45 ER5b ExonRegion 0 6.35 4.07 0.00 0.00 2.68 3.67 2.65 0.00 1.24 1.15 5.80 0.00 4.69 0.00 2.90 2.97 0.00 0.00 3.19 4.26 0.00 2.08 5.87 46 ER5c ExonRegion 0 1.06 1.36 0.00 0.00 2.68 2.45 1.10 0.00 0.82 0.38 2.90 0.00 1.56 0.00 0.48 0.99 0.00 0.00 1.06 1.77 0.00 0.00 3.92