Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C9orf129 Gene 0 0.56 7.46 14.69 6.64 0.71 0.57 1.70 6.49 6.27 7.71 0.17 0.00 0.00 0.00 0.00 0.00 0.00 15.26 5.49 14.58 0.00 0.00 0.52 2 375419 Transcript 0 0.24 8.56 14.31 7.67 1.27 0.22 1.00 5.61 6.51 8.45 0.08 0.00 0.00 0.00 0.00 0.00 0.00 13.68 5.74 12.56 0.00 0.00 0.81 3 ER1a ExonRegion 0 0.32 9.40 17.61 6.70 0.80 1.37 2.63 5.34 6.41 9.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.32 6.71 24.09 0.00 0.00 0.73 4 E1a_E2a KnownJunction 0 0.00 14.34 31.76 19.24 0.00 0.00 2.03 8.87 23.41 24.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37.31 17.51 38.03 0.00 0.00 4.10 5 ER2a ExonRegion 0 0.00 5.21 37.50 9.20 0.00 0.00 1.11 11.23 12.42 17.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39.02 12.55 28.48 0.00 0.00 1.98 6 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 ER3a ExonRegion 0 1.48 10.74 21.15 10.45 0.48 0.65 2.83 14.26 12.73 10.50 0.69 0.00 0.00 0.00 0.00 0.00 0.00 21.03 9.48 19.55 0.00 0.00 0.52 8 E3a_E4a KnownJunction 0 0.00 9.14 7.63 5.43 0.00 0.00 0.00 4.52 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 4.61 2.36 0.00 0.00 0.00 9 I3 Intron 0 2.45 40.63 33.13 30.28 5.72 9.06 9.91 19.29 24.93 22.74 0.00 0.02 0.00 0.00 0.00 0.00 0.00 23.76 9.30 36.21 0.00 0.11 0.53 10 I3_AR1 ActiveIntronRegion 0 1.46 26.78 25.26 16.26 0.56 1.54 6.79 11.93 8.69 10.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36.77 10.06 29.96 0.00 0.00 0.00 11 I3_SR1 SilentIntronRegion 0 1.71 46.08 26.41 27.71 3.80 4.11 10.35 13.33 15.29 13.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.87 6.77 31.42 0.00 0.10 0.60 12 I3_AR2 ActiveIntronRegion 0 4.66 38.25 36.80 39.25 21.33 20.34 17.54 30.68 42.83 37.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.10 4.52 33.89 0.00 0.00 0.00 13 I3_SR2 SilentIntronRegion 0 8.77 41.78 42.67 32.01 23.10 40.21 14.54 28.13 41.97 43.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31.96 18.23 58.78 0.00 0.00 0.59 14 I3_AR3 ActiveIntronRegion 0 5.21 38.34 45.88 39.00 14.92 28.98 16.95 25.80 54.65 39.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39.59 18.06 64.78 0.00 0.50 0.71 15 I3_SR3 SilentIntronRegion 0 0.99 19.91 28.21 23.86 1.94 6.48 5.20 17.93 24.09 23.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32.80 10.81 34.64 0.00 0.05 0.45 16 I3_AR4 ActiveIntronRegion 0 2.27 53.18 49.74 40.55 4.71 4.74 9.23 28.75 29.43 30.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 32.80 11.16 34.79 0.00 0.12 0.86 17 I3_AR5 ActiveIntronRegion 0 4.33 51.99 46.09 36.54 4.87 13.92 8.88 28.15 33.83 32.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26.43 9.96 39.38 0.00 0.11 0.31 18 Ix Intron 0 1.91 39.89 41.25 31.78 2.17 5.95 4.66 25.44 22.16 27.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35.45 8.04 30.80 0.00 0.47 0.13 19 Ix_SR1 SilentIntronRegion 0 1.82 32.82 43.61 32.47 2.44 6.59 4.76 26.72 23.56 29.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39.21 8.54 32.08 0.00 0.42 0.15 20 Ix_AR1 ActiveIntronRegion 0 2.68 99.39 22.32 26.53 0.00 0.77 3.91 15.18 10.86 10.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.64 4.03 20.61 0.00 0.88 0.00 21 E4_Aa NovelBoundary 0 20.74 259.82 100.68 92.86 34.89 36.06 35.99 107.78 44.91 53.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36.15 35.95 49.15 0.00 0.00 4.18 22 ER4a ExonRegion 0 0.09 8.77 4.95 6.58 1.23 0.00 0.00 3.76 1.82 3.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.82 0.17 0.00 0.00 0.00 23 E4_Da NovelBoundary 0 10.08 215.03 125.96 74.42 12.05 15.73 12.10 56.19 47.05 49.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47.84 22.49 54.39 0.00 2.33 3.41 24 E4a_E5a KnownJunction 0 0.00 16.18 6.12 8.72 7.98 0.00 0.00 2.05 0.00 8.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 E5_Aa NovelBoundary 0 30.01 369.21 189.50 108.71 12.39 33.45 23.98 132.75 58.94 75.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 163.66 33.70 112.88 0.00 3.12 11.27 26 ER5a ExonRegion 0 0.31 3.26 2.05 2.75 0.91 0.00 0.38 0.47 0.01 1.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.80 0.00 0.31 0.00 0.00 0.00