Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF782 Gene 0 21.98 38.03 17.03 21.18 26.28 19.67 32.82 25.89 24.47 24.48 16.76 30.84 26.71 19.24 14.26 18.40 22.22 15.07 9.31 19.18 5.32 7.79 6.87 2 498811 Transcript 0 1.83 1.23 1.78 2.33 4.68 1.78 1.12 2.79 2.67 3.11 1.37 1.20 1.89 1.19 2.06 0.32 3.09 2.03 0.62 2.43 1.44 0.10 0.59 3 289032 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 481138 Transcript 0 17.16 35.96 18.10 18.90 18.82 9.06 19.81 20.64 14.79 13.02 9.67 15.12 13.93 10.78 14.04 10.80 17.12 3.18 5.10 12.75 4.11 5.45 5.08 5 485322 Transcript 0 0.00 2.83 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 4.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 478850 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 430274 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 466833 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 3.01 4.32 0.00 6.33 9.54 0.00 4.19 0.00 1.95 0.00 2.68 0.00 0.00 0.00 9 395262 Transcript 0 0.00 0.00 0.31 0.00 1.34 0.46 5.30 1.73 1.24 2.29 3.87 0.00 2.35 2.44 4.35 0.74 4.13 1.39 0.00 0.53 0.00 1.04 0.73 10 IG19 Intergenic 0 23.88 43.50 30.90 28.59 36.77 27.44 41.75 34.26 27.57 44.15 21.18 11.65 23.06 18.11 18.80 26.74 19.30 38.11 32.03 55.75 10.08 10.34 13.15 11 IG19_AR6 ActiveIntergenicRegion 0 11.23 35.93 8.67 7.85 26.45 21.31 32.19 8.86 8.67 9.41 22.10 8.03 9.99 20.19 16.58 31.11 27.28 20.96 36.50 61.11 16.90 8.39 12.57 12 IG19_SR5 SilentIntergenicRegion 0 13.21 27.98 4.38 5.28 41.96 31.45 45.27 4.89 6.12 6.42 14.52 3.09 15.18 20.40 26.83 29.49 23.09 25.85 38.67 49.29 16.33 7.76 16.00 13 IG19_SR4 SilentIntergenicRegion 0 4.39 14.33 12.11 5.89 15.53 20.53 24.70 11.75 10.68 22.68 14.43 0.00 8.01 20.72 13.59 18.49 16.42 59.79 17.17 37.05 14.08 4.32 12.18 14 IG19_AR4 ActiveIntergenicRegion 0 72.23 123.60 89.61 95.06 129.09 102.66 161.68 101.91 83.93 144.40 99.39 60.94 113.17 76.06 74.84 111.75 77.75 119.03 109.19 179.52 33.85 47.27 53.43 15 IG19_AR3 ActiveIntergenicRegion 0 60.63 116.49 97.71 74.69 98.77 79.21 96.25 109.22 69.64 147.31 56.51 33.17 81.52 51.74 49.51 79.62 51.53 147.20 111.88 176.35 32.50 29.63 40.99 16 IG19_SR2 SilentIntergenicRegion 0 3.92 44.85 0.00 0.00 27.60 11.92 20.15 0.00 0.00 0.00 3.33 9.62 33.09 11.70 15.58 5.50 9.17 3.49 8.91 28.29 0.00 7.64 0.00 17 IG19_AR1 ActiveIntergenicRegion 0 82.38 118.45 98.77 80.01 108.27 75.31 102.35 102.67 67.68 136.03 46.05 9.26 16.02 45.46 53.44 57.66 36.99 113.55 76.31 143.92 32.23 21.67 30.54 18 IG19_SR1 SilentIntergenicRegion 0 11.03 23.91 14.55 14.39 11.82 7.21 15.31 16.54 17.63 16.35 2.14 2.39 4.54 2.56 3.58 4.87 5.04 9.24 9.11 20.62 1.30 1.74 2.24 19 ER1a ExonRegion 0 0.34 1.83 0.00 0.82 0.59 0.00 0.58 0.00 4.27 2.52 0.50 0.00 0.00 0.00 2.09 0.00 0.00 1.81 0.00 0.00 0.00 0.00 0.70 20 E1_Ab KnownBoundary 0 0.00 8.62 0.00 2.00 3.48 0.00 2.25 0.00 9.78 6.26 2.26 0.00 0.00 0.00 0.00 0.00 0.00 4.44 0.00 0.00 0.00 0.00 3.59 21 ER1b ExonRegion 0 1.88 5.01 0.00 1.57 3.66 0.05 1.64 0.02 4.24 4.57 0.69 0.00 0.00 0.00 0.99 0.00 0.00 3.12 0.00 3.11 0.12 0.00 1.08 22 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 E1a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 E2_Aa NovelBoundary 0 0.00 11.64 7.18 7.36 0.00 2.84 31.00 3.78 13.40 6.39 0.00 0.00 0.00 7.95 0.00 0.00 0.00 4.27 4.61 6.33 0.00 0.00 0.00 25 ER2a ExonRegion 0 2.09 1.36 4.26 4.59 4.68 5.14 1.90 4.23 2.97 4.90 1.50 7.18 8.08 2.56 3.02 0.27 4.34 1.07 0.00 4.76 3.04 0.00 1.97 26 E2a_E3a KnownJunction 0 6.37 0.00 1.83 4.59 17.06 2.44 0.00 7.56 3.10 5.35 4.58 0.00 0.00 2.47 4.45 0.00 9.35 2.53 0.00 3.20 2.47 0.00 0.00 27 ER3a ExonRegion 0 2.19 4.20 4.56 3.95 5.75 3.10 4.22 4.94 5.68 5.87 1.61 0.00 3.26 2.09 2.78 1.62 4.88 6.80 3.73 6.63 3.12 0.61 0.86 28 E3_Da NovelBoundary 0 0.00 15.13 3.19 7.39 0.00 2.33 0.00 4.39 17.82 14.91 2.16 0.00 0.00 4.94 0.00 8.20 0.00 16.29 4.80 5.05 3.15 0.00 0.00 29 E3a_E5c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 I3_AR1 ActiveIntronRegion 0 6.11 16.51 3.33 13.04 9.79 10.16 10.91 7.10 13.04 8.77 1.70 2.42 3.35 1.70 2.72 1.66 1.43 1.67 2.97 4.67 0.73 1.79 1.29 31 I3_SR2 SilentIntronRegion 0 7.27 15.28 11.60 16.46 7.54 13.60 9.89 6.30 10.42 6.85 3.50 0.00 1.05 2.32 1.37 1.21 3.50 1.25 6.05 8.30 2.81 0.85 1.12 32 E4_Aa NovelBoundary 0 3.04 2.43 0.00 0.00 0.00 2.78 0.00 0.00 1.10 3.33 2.68 0.00 0.00 2.47 4.45 15.98 17.02 0.00 0.00 6.01 2.47 0.00 0.00 33 ER4a ExonRegion 0 0.00 2.71 2.17 0.00 0.66 1.54 5.69 1.54 2.18 1.38 11.90 0.00 3.05 12.82 3.91 9.40 18.99 0.73 1.26 0.89 6.30 1.65 4.64 34 E4_Ab KnownBoundary 0 0.00 3.22 0.00 0.00 3.99 0.00 6.62 2.42 1.77 1.42 12.21 0.00 0.00 10.95 4.45 0.00 17.11 0.00 0.00 0.00 13.59 0.00 0.00 35 ER4b ExonRegion 0 0.00 2.89 0.00 0.54 3.74 5.02 3.33 4.12 5.09 5.24 22.59 2.14 1.70 24.93 8.11 9.88 25.81 5.72 0.00 5.51 14.82 3.92 0.88 36 E4_Ac KnownBoundary 0 0.00 5.92 1.74 2.06 3.14 5.34 1.63 4.19 6.39 3.41 6.21 0.00 6.82 39.03 8.90 40.76 22.16 6.14 4.61 5.62 6.05 8.33 8.71 37 ER4c ExonRegion 0 2.30 4.07 0.01 1.09 0.14 3.47 2.41 3.18 3.04 2.98 10.47 0.05 0.60 16.59 8.02 23.05 9.94 4.23 1.80 6.68 7.13 3.37 4.06 38 E4_Ad KnownBoundary 0 0.00 3.35 0.00 2.06 0.00 0.00 6.09 2.14 1.68 7.36 13.64 0.00 0.00 10.60 13.35 4.36 13.28 3.94 0.00 0.00 9.08 0.00 3.67 39 ER4d ExonRegion 0 2.27 8.26 2.67 1.39 2.34 4.57 6.88 10.37 7.94 17.70 25.35 5.97 4.59 17.49 13.41 10.64 21.40 18.65 10.60 17.69 10.25 9.36 9.12 40 E4a_E5b KnownJunction 0 0.00 0.00 1.77 0.00 7.98 0.00 3.58 6.78 1.77 9.35 14.79 0.00 18.51 7.18 4.45 0.00 7.95 4.68 0.00 3.00 0.00 5.33 4.35 41 E4a_E5c KnownJunction 0 0.00 2.83 0.00 0.00 0.00 2.50 0.00 0.00 0.00 0.00 4.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 E4a_E6a KnownJunction 0 0.00 8.88 1.71 1.80 4.24 0.00 0.00 0.00 8.04 10.61 4.63 0.00 0.00 4.94 4.45 16.32 4.49 14.05 9.22 12.46 10.32 11.70 12.72 43 E5_Ab NovelBoundary 0 6.37 0.00 1.27 1.63 0.00 0.00 1.90 0.00 1.24 4.08 2.32 0.00 0.00 4.83 0.00 0.00 0.00 2.57 4.05 0.00 5.37 0.00 10.93 44 ER5a ExonRegion 0 0.00 0.00 0.31 0.00 1.34 0.46 5.30 1.73 1.24 2.29 3.87 0.00 2.35 2.44 4.35 0.74 4.13 1.39 0.00 0.53 0.00 1.04 0.73 45 ER5b ExonRegion 0 1.00 3.73 4.10 2.78 4.62 0.23 21.33 11.28 3.10 13.16 23.23 15.19 16.80 22.83 10.92 18.32 21.49 6.25 6.95 4.64 1.52 3.49 6.03 46 E5_Ac KnownBoundary 0 3.41 0.00 7.13 5.89 8.32 0.00 26.32 11.34 3.24 13.70 26.32 51.77 27.92 18.84 14.09 24.01 21.69 9.33 21.84 8.63 2.78 2.88 8.02 47 E5_Da KnownBoundary 0 10.59 5.99 4.52 3.80 11.29 11.02 31.27 6.74 1.65 9.29 18.85 30.01 15.10 34.96 8.90 12.05 22.07 12.85 12.24 8.95 3.15 8.70 4.35 48 ER5c ExonRegion 0 8.33 3.87 7.27 6.33 7.08 7.16 28.79 9.92 2.99 15.50 24.38 46.23 22.24 26.98 9.64 16.39 23.11 13.71 17.37 9.27 2.70 5.78 8.81 49 ER5d ExonRegion 0 5.96 5.26 6.41 3.96 9.32 11.71 16.33 10.38 8.43 16.22 25.22 13.65 17.64 28.53 16.02 23.00 24.48 11.85 8.28 10.54 2.36 7.05 6.23 50 E5_Db NovelBoundary 0 14.00 6.58 5.00 9.32 0.00 10.51 24.69 4.72 2.86 10.83 5.00 12.45 0.00 10.36 4.45 3.16 9.44 12.02 0.00 9.65 2.41 0.00 3.67 51 E5b_E6a KnownJunction 1 3.33 3.35 1.48 5.36 11.97 4.94 15.81 4.03 2.86 14.24 21.27 12.60 34.41 35.73 0.00 36.14 30.39 4.02 4.33 6.33 2.59 8.51 0.00 52 E6_Aa NovelBoundary 0 5.63 6.18 3.34 8.92 0.00 0.00 27.43 6.37 6.19 1.53 7.37 12.15 12.50 14.24 0.00 11.88 13.18 17.41 22.49 17.96 2.47 0.00 0.00 53 ER6a ExonRegion 0 9.72 19.41 6.44 3.44 6.17 11.50 15.12 12.10 17.63 22.47 28.86 36.91 34.26 42.86 16.96 34.76 31.05 15.03 15.44 25.50 18.08 10.28 13.19 54 E6_Da NovelBoundary 0 14.97 15.72 2.84 8.66 15.79 2.10 36.43 9.94 6.31 3.87 10.27 6.30 26.13 4.83 0.00 7.26 12.44 0.00 13.27 3.26 0.00 0.00 4.27 55 E6a_E7a KnownJunction 0 15.85 8.81 8.52 0.00 4.33 8.18 13.96 19.88 17.85 19.21 24.48 18.61 0.00 51.45 20.27 18.97 25.06 22.26 8.56 22.56 20.88 14.70 16.56 56 E6a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 2.25 0.00 0.00 3.01 4.32 0.00 6.33 9.54 0.00 4.19 0.00 1.95 0.00 2.68 0.00 0.00 0.00 57 E7_Aa NovelBoundary 0 10.37 12.37 0.00 8.69 0.00 2.50 23.67 6.45 11.14 5.02 2.63 12.60 6.33 0.00 10.88 4.02 12.44 4.52 9.51 6.14 3.15 0.00 0.00 58 ER7a ExonRegion 1 6.41 13.55 11.72 6.39 5.50 11.70 19.84 14.41 19.57 33.53 32.45 35.49 6.34 33.60 19.86 32.32 30.17 19.75 19.79 23.40 19.24 13.41 11.66 59 E7_Da KnownBoundary 0 3.78 18.81 13.60 13.25 8.23 23.68 31.84 23.74 43.98 53.29 24.74 12.45 6.66 36.73 33.25 18.37 34.13 27.40 22.59 19.11 2.90 6.25 12.12 60 E7_Db NovelBoundary 1 71.79 253.05 81.75 102.68 133.96 77.51 119.11 122.48 175.11 171.73 89.81 31.21 70.61 124.96 33.13 128.51 133.15 371.42 83.58 307.57 106.38 85.67 77.85 61 ER7b ExonRegion 1 7.70 19.20 9.21 15.48 8.03 21.35 26.43 19.29 25.34 35.05 37.96 19.22 25.14 49.76 16.60 16.88 31.69 26.24 21.02 19.06 14.19 12.33 14.45 62 E7_Dc NovelBoundary 0 3.70 6.71 1.66 7.66 16.89 10.45 14.79 6.82 6.92 6.85 0.00 0.00 0.00 0.00 0.00 8.37 4.77 6.76 14.21 11.57 5.87 3.00 0.00 63 E7c_E8a KnownJunction 0 14.52 27.76 19.19 19.74 11.97 59.74 6.09 16.84 28.62 31.94 41.01 24.76 28.73 24.90 13.60 44.09 36.56 26.20 25.79 29.79 30.33 9.00 0.00 64 ER7c ExonRegion 1 12.77 22.70 12.29 15.65 8.03 33.01 14.69 19.63 28.29 28.56 44.46 20.81 30.86 37.15 8.80 29.43 32.37 29.98 18.29 26.63 26.94 11.69 7.67 65 E8_Aa NovelBoundary 0 3.26 0.00 5.32 7.66 0.00 0.00 0.00 2.34 2.86 1.67 0.00 18.91 0.00 0.00 0.00 0.00 0.00 1.95 0.00 7.99 0.00 0.00 4.35 66 ER8a ExonRegion 0 16.33 31.96 14.33 16.65 19.81 28.05 28.57 17.35 24.10 31.71 41.75 34.89 37.66 44.33 21.59 50.12 33.46 29.53 29.01 24.91 14.04 13.40 15.17 67 E8a_E9a KnownJunction 0 27.04 27.23 13.69 19.44 44.65 7.33 16.21 24.56 20.72 27.13 19.69 80.28 19.48 33.90 16.69 37.68 37.59 21.06 4.05 18.98 0.00 14.27 4.35 68 I8 Intron 0 15.64 15.13 8.91 10.85 9.33 4.57 13.35 7.21 9.33 9.28 1.16 8.76 10.48 1.76 3.78 5.06 3.74 2.26 2.35 8.08 0.72 1.15 2.52 69 I8_SR1 SilentIntronRegion 0 14.39 14.93 8.15 10.53 8.38 4.30 13.14 7.52 8.00 8.66 1.09 8.77 10.26 1.72 4.12 5.03 3.94 1.93 2.24 7.74 0.42 1.08 2.59 70 I8_AR1 ActiveIntronRegion 0 27.73 13.72 15.56 13.82 16.10 7.22 15.14 7.22 16.08 15.12 2.32 9.36 7.43 1.72 3.62 5.09 3.33 4.62 4.95 10.93 2.37 1.49 3.32 71 I8_AR2 ActiveIntronRegion 0 14.91 11.52 9.82 12.18 9.43 3.98 14.35 5.99 10.34 9.68 0.33 8.04 13.02 1.87 1.73 5.19 2.90 2.17 0.00 6.86 1.29 0.00 1.72 72 I8_AR3 ActiveIntronRegion 1 8.06 24.44 4.28 7.74 7.84 3.22 11.64 4.53 11.87 5.00 0.57 8.16 17.30 2.30 1.80 5.23 2.90 1.89 0.93 8.11 0.65 2.44 0.86 73 E9_Aa NovelBoundary 1 3.04 33.55 13.25 17.91 12.05 13.12 53.88 15.61 9.40 7.15 0.00 34.66 13.15 0.00 4.45 0.00 0.00 4.23 0.00 22.24 0.00 5.63 0.00 74 ER9a ExonRegion 0 19.12 47.80 15.49 22.46 23.43 17.42 41.45 24.15 35.88 24.84 25.92 49.50 31.06 30.14 17.43 29.89 34.46 21.86 7.00 24.69 5.05 9.35 7.21 75 E9_Da KnownBoundary 0 42.53 49.73 16.17 19.94 28.35 10.28 57.06 34.38 35.99 27.37 24.32 44.11 47.07 17.13 19.41 32.38 21.04 19.28 4.33 28.76 2.78 6.00 21.34 76 ER9b ExonRegion 0 24.92 46.71 17.74 24.89 34.91 25.46 44.02 30.18 31.57 30.05 18.41 40.08 37.54 21.38 13.18 21.04 26.51 19.77 11.07 21.87 5.05 7.72 8.57 77 E9_Db KnownBoundary 1 38.15 22.04 32.76 43.22 31.32 40.83 62.31 46.17 23.78 42.95 8.79 25.36 26.62 29.08 25.71 4.02 42.92 10.28 8.38 26.40 3.15 11.70 11.35 78 ER9c ExonRegion 0 41.87 44.31 27.38 31.36 37.82 32.15 42.17 41.46 28.28 33.02 12.63 35.20 28.69 15.75 17.27 14.74 18.58 15.45 9.05 22.20 4.33 11.39 5.40 79 E9_Dc KnownBoundary 0 33.41 72.88 37.37 54.14 68.00 30.10 45.44 50.56 43.26 37.02 15.32 31.21 32.95 24.43 13.35 15.72 39.46 23.79 28.33 22.82 8.34 8.70 7.60 80 ER9d ExonRegion 1 34.33 69.22 34.03 37.80 36.98 16.59 33.93 39.74 27.41 24.67 7.45 30.25 24.80 8.74 24.17 12.19 15.26 5.63 8.95 24.61 1.91 9.25 5.51