Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C9orf130 Gene 0 21.68 15.22 9.94 13.76 18.81 9.50 14.44 18.77 18.14 14.88 5.53 10.35 11.28 6.35 10.85 15.17 12.45 13.54 18.22 22.30 8.09 4.70 8.77 2 412446 Transcript 0 6.16 5.97 3.81 9.42 9.31 5.15 10.11 13.04 18.92 8.16 2.58 4.64 5.77 3.93 7.62 11.53 10.81 7.94 13.97 11.05 6.11 4.31 7.90 3 321517 Transcript 0 1.37 2.03 3.33 1.05 3.96 1.50 3.53 1.80 1.80 1.74 1.25 9.15 4.28 1.49 0.81 4.68 1.98 0.44 1.42 1.73 2.62 0.00 0.86 4 437228 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 429781 Transcript 0 7.02 7.31 5.65 14.09 12.13 5.18 9.97 12.98 16.00 5.81 0.96 2.89 3.42 1.88 1.99 6.81 4.51 6.87 4.41 9.30 1.87 2.87 6.58 6 375268 Transcript 0 7.37 4.79 0.00 0.00 1.55 4.79 3.59 0.00 1.16 0.00 2.74 8.80 20.27 7.44 7.11 10.74 2.98 1.37 4.93 5.70 1.49 0.00 4.55 7 433656 Transcript 0 0.00 0.00 2.42 3.61 0.89 0.00 0.99 1.05 1.78 1.38 0.00 0.00 4.02 0.00 0.00 0.00 0.00 0.00 2.11 0.00 0.00 0.00 0.00 8 427259 Transcript 0 37.76 9.73 5.71 7.72 14.71 1.86 5.06 7.37 5.46 14.50 12.44 24.05 13.28 7.98 8.99 5.42 11.54 3.59 5.49 11.82 2.93 5.54 0.51 9 448465 Transcript 0 13.48 0.00 0.00 0.00 0.00 0.00 0.00 2.55 0.00 1.40 0.00 12.60 0.00 2.47 0.00 4.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.30 0.00 0.00 0.00 0.00 0.00 0.00 11 ER1b ExonRegion 0 3.85 0.00 0.00 0.00 0.00 0.00 0.96 0.00 0.28 0.00 0.00 0.00 0.00 0.00 0.00 1.89 3.30 0.00 0.87 0.00 0.00 0.00 0.00 12 ER1c ExonRegion 0 5.80 1.83 0.00 0.00 0.00 1.11 2.04 0.08 1.22 0.00 0.00 0.00 0.00 0.00 1.17 2.94 2.89 0.00 1.61 0.00 0.00 0.00 0.00 13 E1_Da KnownBoundary 0 13.48 6.38 1.27 1.47 0.00 0.00 0.00 11.62 5.84 4.11 12.21 0.00 0.00 5.36 0.00 8.37 17.95 9.91 4.14 13.61 3.15 2.94 4.35 14 E1a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 ER1d ExonRegion 0 13.13 0.45 2.29 1.90 2.93 0.67 0.99 3.74 2.15 1.88 1.19 0.65 0.71 2.44 4.37 5.51 3.93 2.80 1.10 1.95 3.96 0.74 1.61 16 E1_Ad KnownBoundary 0 86.31 6.31 4.85 1.30 0.00 0.00 4.50 1.52 5.09 0.00 5.00 5.40 6.17 2.47 15.45 0.00 8.42 9.53 0.00 0.00 8.77 0.00 0.00 17 ER1e ExonRegion 0 60.30 11.40 2.51 4.25 7.53 8.66 6.93 6.63 9.85 2.24 11.96 5.64 1.42 7.97 17.54 11.34 18.12 8.64 7.19 1.34 11.48 1.99 0.07 18 E1_Db KnownBoundary 0 89.87 20.06 0.00 9.59 28.27 24.02 15.24 12.03 11.23 5.32 24.01 13.95 13.15 14.13 23.86 19.91 36.00 2.07 17.32 5.56 18.16 2.69 0.00 19 ER1f ExonRegion 0 58.63 7.88 3.75 8.67 29.22 64.64 23.21 17.61 10.11 11.36 14.95 6.29 10.19 12.05 38.08 23.64 23.16 17.84 17.22 15.06 13.57 0.42 8.95 20 E1_Ae KnownBoundary 0 65.64 9.27 8.37 9.79 47.11 43.90 17.31 26.94 12.27 16.55 7.00 6.30 21.26 22.01 30.16 11.45 12.90 34.41 7.81 21.03 5.50 0.00 7.51 21 ER1g ExonRegion 0 25.00 2.86 17.74 19.58 18.53 10.27 8.61 32.82 31.52 37.22 24.42 8.74 8.26 16.44 33.70 24.51 28.67 17.45 28.29 34.42 24.11 4.70 12.92 22 E1_Af KnownBoundary 0 19.26 0.00 34.03 36.13 26.99 14.82 5.65 55.82 42.71 59.58 23.32 0.00 6.33 24.78 51.05 32.56 33.38 47.75 33.98 78.36 22.49 8.08 20.06 23 ER1h ExonRegion 0 37.68 14.47 24.12 28.13 58.73 56.02 30.88 49.37 53.18 48.57 25.71 19.53 19.39 26.37 38.40 60.85 41.31 58.45 123.54 56.54 17.08 14.64 34.11 24 E1_Ag KnownBoundary 0 17.11 42.23 8.93 31.36 20.20 4.88 5.43 55.45 48.38 42.71 25.16 51.02 0.00 14.95 38.94 31.70 37.87 34.32 39.91 42.89 17.17 6.12 4.35 25 ER1i ExonRegion 0 53.05 16.97 8.81 28.95 23.55 6.72 7.50 49.97 54.37 30.80 22.12 34.64 22.15 21.87 21.89 25.99 43.65 25.60 31.61 37.92 19.20 7.89 12.01 26 E1_Dc NovelBoundary 0 9.19 8.75 4.76 5.66 7.13 8.46 1.99 14.17 10.88 12.54 2.05 6.30 20.45 4.59 5.56 4.36 13.46 7.71 4.61 20.77 5.75 3.12 0.00 27 E1c_E2a KnownJunction 0 0.00 0.00 3.61 0.00 0.00 0.00 0.00 2.55 1.39 0.00 2.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.09 0.00 0.00 28 E1c_E2b KnownJunction 0 13.48 0.00 0.00 0.00 0.00 0.00 0.00 2.55 0.00 1.40 0.00 12.60 0.00 2.47 0.00 4.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 E1c_E3a KnownJunction 0 38.67 2.63 4.79 7.72 7.72 0.00 0.00 6.57 8.36 19.45 24.22 32.41 8.28 13.95 15.33 8.37 20.94 5.93 9.51 5.75 5.87 10.59 0.00 30 E1c_E4a KnownJunction 0 0.00 0.00 4.44 25.67 15.20 7.89 14.00 18.11 28.91 2.77 0.00 0.00 0.00 2.47 0.00 8.03 3.74 6.72 0.00 0.00 0.00 5.14 12.63 31 E1c_E6a NovelJunction 0 2.89 2.89 3.67 0.00 11.63 0.00 2.16 2.55 4.92 8.86 0.00 6.30 12.99 0.00 4.45 4.27 4.77 11.81 38.87 8.18 9.33 0.00 0.00 32 E1c_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.62 0.00 0.00 0.00 0.00 0.00 33 E2_Aa NovelBoundary 0 3.78 0.00 1.21 2.06 0.00 10.28 13.34 0.00 3.24 8.76 5.37 30.91 12.99 2.41 4.94 3.16 0.00 9.04 0.00 12.66 0.00 0.00 0.00 34 ER2a ExonRegion 0 2.74 4.07 3.06 2.11 7.92 3.01 7.06 1.06 2.21 3.47 0.28 18.30 8.57 2.99 1.62 9.35 3.96 0.89 2.85 3.46 2.14 0.00 1.72 35 E2_Ab KnownBoundary 0 3.04 0.00 3.61 3.33 12.99 2.90 4.33 0.00 0.00 5.51 0.00 30.16 20.45 2.30 0.00 4.36 12.90 2.57 13.37 8.76 0.00 0.00 3.33 36 ER2b ExonRegion 1 9.88 0.47 2.45 1.26 8.10 4.89 4.45 1.60 0.00 5.68 0.94 12.77 13.11 5.75 4.24 1.45 12.27 2.18 8.33 2.29 0.00 1.98 0.53 37 E2a_E3a KnownJunction 0 7.04 0.00 1.42 0.00 4.07 5.11 4.06 0.00 0.00 4.19 2.32 0.00 0.00 7.95 4.45 0.00 12.90 0.00 4.61 2.68 0.00 2.76 0.00 38 I2 Intron 0 8.91 5.07 2.56 3.23 7.84 2.52 5.98 4.42 4.59 4.79 2.53 19.66 20.43 2.06 1.78 3.43 3.70 0.92 2.78 11.80 0.76 1.23 0.55 39 I2_SR1 SilentIntronRegion 0 8.91 5.07 2.56 3.23 7.84 2.52 5.98 4.42 4.59 4.79 2.53 19.66 20.43 2.06 1.78 3.43 3.70 0.92 2.78 11.80 0.76 1.23 0.55 40 E3_Aa NovelBoundary 0 94.39 32.95 0.00 5.09 16.64 0.00 3.97 3.70 4.37 5.45 0.00 0.00 13.15 2.12 4.45 0.00 0.00 0.00 4.24 2.81 0.00 0.00 0.00 41 ER3a ExonRegion 0 40.43 12.56 6.37 8.96 21.29 2.94 8.56 10.56 8.82 19.58 9.15 28.14 15.32 12.82 7.34 11.87 12.16 4.16 7.16 19.18 4.09 3.57 0.00 42 E3_Da KnownBoundary 0 6.15 0.00 1.45 5.29 12.22 0.00 7.15 2.09 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.50 0.00 0.00 0.00 43 E3_Db KnownBoundary 0 9.33 9.14 2.87 5.09 4.16 2.90 1.85 0.00 4.63 7.25 0.00 7.05 7.79 0.00 0.00 3.59 4.77 0.00 0.00 14.57 0.00 0.00 0.00 44 ER3b ExonRegion 0 23.28 10.17 2.45 9.54 18.73 1.83 9.27 12.10 3.71 13.76 0.00 8.66 4.69 4.87 0.00 5.94 3.30 1.85 0.00 19.15 0.00 0.00 0.00 45 ER3c ExonRegion 0 36.85 16.82 6.63 7.71 21.69 3.72 10.12 8.17 2.57 9.56 0.67 15.70 18.27 2.01 2.65 2.48 2.13 1.24 1.47 17.88 0.00 0.48 1.01 46 E3_Dc NovelBoundary 0 82.24 16.64 2.87 6.93 95.16 2.44 14.49 8.58 5.24 14.13 2.68 18.31 13.64 2.47 13.35 6.58 9.16 1.53 3.67 31.00 0.00 0.00 3.50 47 I3 Intron 0 6.33 4.86 4.12 2.05 7.37 3.55 4.73 5.18 4.37 10.38 1.43 10.06 8.74 1.88 1.42 3.33 3.27 7.62 4.84 22.74 1.44 0.54 0.95 48 I3_SR1 SilentIntronRegion 0 2.58 3.49 2.05 2.26 4.41 1.20 4.36 3.05 3.45 5.15 1.03 9.84 9.42 1.48 1.07 2.47 2.84 4.54 3.34 19.19 0.97 0.32 0.55 49 I3_AR1 ActiveIntronRegion 0 1.96 3.19 6.95 1.54 3.76 3.23 3.13 3.22 6.33 10.36 1.21 8.42 5.85 5.64 0.73 7.53 5.64 30.80 6.26 34.25 4.80 0.00 2.20 50 I3_SR2 SilentIntronRegion 0 2.35 3.62 12.30 0.86 1.49 4.79 0.00 2.62 4.46 10.07 1.83 12.27 2.00 3.16 1.93 0.94 6.17 29.50 5.31 35.54 4.86 0.00 2.56 51 I3_AR2 ActiveIntronRegion 0 4.51 2.11 2.84 0.33 6.82 1.76 3.96 4.63 3.05 6.36 3.13 2.87 1.63 2.64 1.44 10.05 2.68 19.65 6.64 31.31 6.47 0.00 0.07 52 I3_SR3 SilentIntronRegion 0 10.25 6.33 5.84 1.66 10.82 6.57 5.20 6.63 5.17 15.76 1.61 11.70 8.47 2.23 1.53 3.82 3.43 9.66 6.19 25.10 1.41 0.82 1.23 53 I3_AR3 ActiveIntronRegion 0 15.85 9.32 9.04 3.60 12.73 5.12 6.45 14.40 6.75 21.81 3.28 6.82 10.30 1.46 3.59 4.17 5.09 6.75 8.34 31.62 2.32 0.99 2.29 54 ER4a ExonRegion 0 0.13 0.00 3.17 14.64 14.31 8.14 20.08 17.99 33.07 5.28 0.15 0.00 6.18 0.30 0.00 9.05 22.26 5.29 4.54 2.45 1.74 5.68 6.27 55 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.36 0.00 0.00 0.00 56 E4a_E6a KnownJunction 0 0.00 0.00 0.00 15.55 14.69 5.22 6.71 18.36 35.36 9.86 0.00 0.00 0.00 0.00 0.00 8.20 13.65 2.24 13.27 3.26 0.00 0.00 4.35 57 E4a_E8a NovelJunction 0 0.00 0.00 0.00 1.86 0.00 17.09 4.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58 E5_Aa NovelBoundary 0 291.53 178.98 129.33 123.33 170.03 91.20 258.53 170.17 100.23 122.20 53.75 34.96 46.26 20.19 41.78 92.71 87.80 136.67 79.63 146.75 46.70 64.30 110.89 59 ER5a ExonRegion 0 21.07 21.94 12.51 16.61 21.19 7.65 15.92 20.83 17.30 14.67 2.89 8.68 10.25 3.16 5.97 12.40 9.79 13.88 13.22 25.53 5.60 3.46 7.11 60 E5_Da NovelBoundary 0 13.71 2.76 5.23 4.99 14.18 0.00 0.00 13.68 9.84 9.35 0.00 12.15 0.00 0.00 0.00 3.93 0.00 2.24 4.80 14.70 2.78 0.00 0.00 61 ER6a ExonRegion 0 24.66 23.89 15.23 22.14 22.54 15.39 33.71 33.78 38.95 22.80 10.33 18.58 23.06 15.72 30.47 37.91 26.30 29.51 42.60 40.93 24.44 17.23 27.24 62 E6_Da NovelBoundary 0 14.22 20.26 2.34 4.16 16.04 0.00 20.58 0.00 9.23 3.33 1.95 0.00 12.01 0.00 0.00 6.66 3.83 1.78 18.07 2.36 2.29 12.55 7.09 63 I6_SR1 SilentIntronRegion 0 4.65 9.43 4.35 9.92 12.58 5.81 10.03 21.40 22.25 12.11 0.47 4.09 3.64 0.86 1.13 8.53 5.24 10.60 21.01 11.05 6.32 5.98 5.74 64 I6_AR1 ActiveIntronRegion 0 3.87 13.28 9.52 16.83 30.42 6.47 14.78 38.57 42.53 26.00 0.00 4.23 1.74 0.16 1.68 5.48 2.51 7.89 22.71 16.61 3.76 4.95 1.37 65 I6_SR2 SilentIntronRegion 0 6.62 15.53 8.11 25.24 33.62 7.81 23.50 45.22 60.82 40.26 0.00 6.47 2.77 0.46 0.95 13.45 3.45 23.71 37.86 16.75 5.42 9.55 4.35 66 I6_AR2 ActiveIntronRegion 0 20.16 22.40 13.97 31.47 36.25 13.28 19.16 48.71 46.52 29.27 0.45 7.58 3.56 1.30 0.96 8.88 3.54 10.13 32.11 15.73 5.16 6.31 4.66 67 ER7a ExonRegion 0 0.08 0.00 0.00 1.24 2.12 0.71 0.75 0.65 0.49 1.33 0.00 0.00 0.00 0.00 0.02 0.00 0.13 0.03 0.00 0.00 0.08 0.00 0.05 68 E7a_E8a KnownJunction 0 0.00 0.00 0.00 2.06 0.00 5.74 2.08 2.55 1.79 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 69 E8_Aa NovelBoundary 0 0.00 0.00 6.27 22.94 0.00 5.00 0.00 6.08 3.07 10.99 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.79 0.00 0.00 0.00 0.00 0.00 70 ER8a ExonRegion 0 0.61 2.71 0.54 7.74 8.75 1.64 2.74 2.86 11.80 5.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.19 2.83 0.00 0.52 0.00 0.00 71 E8a_E9a KnownJunction 0 3.04 0.00 1.66 10.52 3.74 0.00 0.00 0.00 9.23 4.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.31 0.00 0.00 72 ER9a ExonRegion 0 0.82 1.61 1.37 4.53 3.84 3.63 1.46 3.10 8.12 3.09 0.38 1.06 2.78 0.89 1.38 0.93 0.26 0.82 2.80 0.88 3.46 0.00 1.56 73 E9_Da NovelBoundary 0 1119.01 1163.67 1258.29 1471.77 969.61 1059.28 1771.81 1568.12 1489.11 1304.85 472.75 508.97 543.80 413.86 526.73 1216.86 809.91 1669.41 1141.87 1153.96 599.98 443.45 993.97 74 E9a_E10a KnownJunction 0 0.00 0.00 4.85 7.23 0.00 0.00 1.99 2.09 3.18 2.77 0.00 0.00 6.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 75 E9_Db NovelBoundary 0 749.10 768.22 3681.09 2726.49 679.20 490.00 699.40 2747.32 3948.40 2008.28 353.14 192.66 188.14 94.77 322.52 821.84 673.87 3429.89 972.92 859.81 413.35 327.23 706.04 76 ER9b ExonRegion 0 7.37 4.79 0.00 0.00 1.55 4.79 3.59 0.00 1.16 0.00 2.74 8.80 20.27 7.44 7.11 10.74 2.98 1.37 4.93 5.70 1.49 0.00 4.55 77 E10_Aa NovelBoundary 0 79.50 130.96 251.56 361.03 85.23 85.75 99.90 316.39 288.16 298.44 16.85 31.66 8.28 23.90 20.40 103.73 72.65 361.22 63.34 108.34 28.79 30.07 51.22 78 ER10a ExonRegion 0 0.00 0.00 0.00 0.00 1.77 0.00 0.00 0.00 0.38 0.00 0.00 0.00 1.71 0.00 0.00 0.00 0.00 0.00 4.22 0.00 0.00 0.00 0.00