Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GKAP1 Gene 0 23.40 60.03 50.21 41.75 59.29 51.67 49.73 58.09 29.98 53.93 19.56 20.49 16.93 8.28 9.39 8.07 9.16 13.29 27.34 21.86 0.63 3.74 1.64 2 388782 Transcript 0 2.99 2.82 2.16 0.63 2.34 0.16 4.26 0.45 0.00 0.14 4.12 2.07 6.02 2.62 1.45 1.50 2.00 2.21 2.43 1.12 0.00 0.00 0.28 3 462223 Transcript 0 0.39 1.14 1.36 0.76 0.00 4.44 1.73 0.48 0.69 0.00 0.06 0.66 0.00 0.00 0.44 0.00 0.00 1.54 1.72 1.19 0.00 0.00 0.00 4 376371 Transcript 0 21.03 33.49 49.09 34.15 43.51 55.46 39.07 43.05 25.42 44.32 16.00 17.42 6.45 6.50 11.23 5.63 10.44 3.32 18.15 16.26 0.00 3.02 0.30 5 376365 Transcript 0 23.04 64.99 43.29 39.29 118.08 77.85 46.50 68.22 36.69 48.35 18.85 0.00 20.13 13.19 9.39 0.00 4.68 6.05 0.00 17.96 0.00 0.00 0.00 6 485742 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.24 0.00 0.05 0.00 1.76 0.00 0.00 0.97 0.00 0.00 3.04 0.00 0.00 0.00 0.00 0.00 0.00 7 491634 Transcript 0 7.57 6.16 1.71 5.37 14.63 0.51 11.18 5.94 1.65 5.41 0.98 6.14 4.46 0.89 0.54 0.73 0.86 1.49 2.50 4.22 0.53 1.02 0.00 8 376362 Transcript 0 8.39 13.16 6.15 15.99 14.48 5.57 13.43 7.99 10.53 7.85 2.74 3.29 5.17 1.14 0.43 1.83 3.03 0.80 3.67 3.58 0.00 1.09 0.00 9 ER1a ExonRegion 0 0.00 0.00 0.00 0.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 ER2a ExonRegion 0 0.00 0.14 0.00 1.34 0.00 1.25 1.15 0.00 0.00 0.00 0.00 2.42 0.00 0.00 0.00 0.00 0.00 0.05 0.00 1.45 0.00 0.00 0.00 12 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E3_Aa NovelBoundary 0 0.00 3.03 6.03 1.76 0.00 0.00 2.25 1.77 0.00 8.54 0.00 0.00 0.00 2.35 0.00 0.00 0.00 17.29 0.00 0.00 0.00 0.00 0.00 14 ER3a ExonRegion 0 0.79 2.27 2.72 1.51 0.00 8.87 3.46 0.96 1.37 0.00 0.11 1.33 0.00 0.00 0.89 0.00 0.00 3.08 3.44 2.38 0.00 0.00 0.00 15 E3a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 E4_Ab NovelBoundary 0 3.04 11.12 3.96 0.00 0.00 22.15 5.65 3.37 1.68 2.36 2.63 0.00 0.00 0.00 0.00 0.00 0.00 5.76 4.71 10.80 0.00 0.00 4.18 17 ER4a ExonRegion 0 0.00 2.03 0.82 0.00 0.00 0.00 6.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 18 ER4b ExonRegion 0 4.96 15.07 4.47 1.88 4.67 9.44 17.49 2.03 1.62 6.29 5.64 0.00 0.00 3.78 2.22 2.54 2.37 12.30 6.25 3.11 1.02 0.97 0.00 19 E4_Ac KnownBoundary 0 5.63 0.00 8.25 6.99 3.74 26.92 7.73 18.03 5.38 6.10 23.37 0.00 0.00 6.95 4.45 8.20 4.77 13.27 8.28 18.22 0.00 0.00 0.00 20 ER4c ExonRegion 0 3.70 20.12 11.32 10.81 7.65 9.79 14.29 11.50 5.04 13.03 12.66 2.26 8.89 12.41 4.62 8.71 5.45 10.36 22.93 14.19 0.27 1.45 3.17 21 E4a_E6a KnownJunction 0 0.00 44.14 36.37 39.02 20.46 44.75 32.02 51.34 26.48 71.91 10.27 12.75 19.97 16.95 19.53 20.08 25.06 51.73 66.83 33.30 2.78 5.45 4.35 22 ER5a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.49 0.00 0.10 0.00 0.83 0.00 0.00 1.95 0.00 0.00 1.88 0.00 0.00 0.00 0.00 0.00 0.00 23 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 0.00 0.00 4.21 0.00 0.00 0.00 0.00 0.00 0.00 24 ER6a ExonRegion 0 23.79 86.92 60.08 51.79 48.37 72.06 65.86 66.32 46.68 83.67 37.71 9.51 24.73 22.13 15.01 17.90 21.41 39.22 49.64 48.60 3.21 5.18 13.08 25 E6_Da NovelBoundary 0 2.96 2.50 13.16 7.82 0.00 6.64 20.98 9.53 5.38 10.77 0.00 6.15 6.66 2.47 0.00 8.03 0.00 4.35 7.25 8.25 0.00 0.00 0.00 26 E6a_E7a KnownJunction 0 26.00 163.13 73.80 54.70 66.64 127.54 99.50 77.96 39.73 83.06 30.59 32.11 25.16 24.55 15.20 26.15 18.89 30.14 54.59 36.18 0.00 0.00 0.00 27 ER7a ExonRegion 0 34.36 109.15 77.24 67.24 103.07 93.10 80.66 108.72 57.35 110.48 45.28 25.03 41.23 20.50 12.73 22.12 31.34 35.47 70.68 44.20 3.10 3.45 5.12 28 E7_Da KnownBoundary 1 25.86 35.19 30.51 24.44 125.55 84.50 62.14 60.63 14.38 29.55 9.42 0.00 46.10 4.59 0.00 11.36 11.78 8.62 38.50 24.35 2.78 2.88 0.00 29 ER7b ExonRegion 1 43.01 142.27 72.74 58.14 147.72 134.42 155.38 103.77 53.20 68.62 34.10 47.05 63.36 21.14 11.66 28.82 15.13 34.93 102.11 58.13 0.58 8.81 4.54 30 E7b_E8a KnownJunction 0 83.72 359.54 147.60 113.87 263.92 328.28 332.41 185.04 104.31 139.92 81.02 82.83 76.78 25.37 20.03 48.11 31.04 69.72 233.79 91.79 0.00 26.33 16.56 31 ER8a ExonRegion 0 50.15 225.46 124.54 88.90 161.34 149.19 138.41 132.87 64.41 107.28 47.25 61.51 50.94 22.46 20.99 24.71 17.12 45.17 105.76 56.72 0.78 11.13 4.57 32 E8_Da NovelBoundary 1 13.34 3.09 4.73 7.13 0.00 2.90 16.47 9.20 1.79 13.30 12.63 6.30 63.63 0.00 8.90 3.50 0.00 0.00 9.04 27.55 0.00 0.00 0.00 33 E8a_E9a KnownJunction 0 10.15 3.35 4.49 0.00 0.00 0.00 3.49 2.55 0.00 0.00 2.16 0.00 6.82 4.83 0.00 0.00 0.00 1.95 0.00 2.88 0.00 0.00 0.00 34 E8a_E10b KnownJunction 1 50.08 203.52 154.78 96.96 146.69 167.35 108.20 124.78 47.71 103.61 11.95 51.02 12.50 14.19 21.51 8.20 17.58 18.36 82.07 62.77 0.00 10.84 0.00 35 I8 Intron 0 6.76 8.08 5.87 7.93 12.87 3.09 12.29 9.10 3.59 7.04 5.45 12.15 15.75 3.56 3.10 4.38 4.10 3.67 6.50 7.32 0.20 0.92 0.52 36 I8_SR1 SilentIntronRegion 0 7.04 8.78 6.59 8.44 13.34 3.49 13.28 9.61 3.69 7.38 5.56 12.39 16.74 3.61 3.30 4.70 4.22 4.06 6.72 7.68 0.22 0.84 0.60 37 E9_Aa NovelBoundary 0 19.63 0.00 7.48 11.42 18.93 0.00 11.44 5.05 7.26 5.16 9.27 12.60 15.10 12.48 0.00 7.35 4.77 3.94 3.48 5.69 3.03 2.69 0.00 38 ER9a ExonRegion 0 10.14 6.62 6.64 0.59 7.27 0.00 12.15 1.08 0.00 1.15 16.65 8.01 15.40 11.32 5.28 7.63 7.05 5.24 9.84 1.40 0.00 0.00 2.24 39 E9a_E10b KnownJunction 0 3.63 10.46 5.35 3.03 11.46 0.00 10.69 0.00 0.00 0.00 14.16 6.15 25.97 4.83 6.30 4.36 8.98 8.58 9.60 3.26 0.00 0.00 0.00 40 ER10a ExonRegion 0 7.57 6.16 1.71 5.37 14.63 0.51 11.18 5.94 1.65 5.41 0.98 6.14 4.46 0.89 0.54 0.73 0.86 1.49 2.50 4.22 0.53 1.02 0.00 41 E10_Ab KnownBoundary 0 19.86 12.37 3.22 5.59 0.00 0.00 19.61 9.36 1.39 1.40 2.21 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.00 0.00 0.00 0.00 0.00 42 ER10b ExonRegion 1 64.90 183.18 147.08 112.77 203.63 156.49 163.67 115.29 55.39 126.28 32.93 47.34 55.31 22.13 26.79 12.54 17.23 33.74 82.82 53.94 0.69 7.87 1.95 43 E10a_E11a KnownJunction 0 109.50 131.69 113.60 133.32 195.16 108.74 158.85 127.90 67.13 116.34 35.43 44.56 50.65 26.96 32.14 4.36 9.54 25.87 46.59 35.09 3.15 13.78 0.00 44 ER11a ExonRegion 0 84.19 136.29 147.64 137.23 218.40 212.35 204.33 146.27 63.05 108.57 37.37 45.70 31.37 19.24 17.73 12.35 15.33 31.25 44.03 39.86 1.32 9.63 0.00 45 E11_Da KnownBoundary 1 104.98 203.12 191.51 160.29 348.64 322.54 314.39 172.92 58.62 114.00 23.27 101.28 40.91 23.54 8.90 28.20 17.30 21.18 40.28 63.41 0.00 8.21 0.00 46 ER11b ExonRegion 1 84.07 169.17 146.05 115.50 206.81 187.49 177.51 155.65 60.11 139.70 29.92 66.48 35.92 19.94 23.21 23.51 13.87 15.20 66.33 43.15 0.00 11.71 0.00 47 I11_AR1 ActiveIntronRegion 0 12.12 18.05 5.45 5.69 4.01 1.05 6.22 8.23 2.11 8.59 0.00 2.15 3.56 0.63 0.56 2.43 0.90 2.01 0.87 3.77 0.00 0.00 0.80 48 E12a_E13a KnownJunction 0 41.79 79.59 67.41 49.28 118.59 34.53 48.62 39.92 24.25 69.38 23.22 12.45 26.78 2.30 13.35 0.00 4.21 7.59 15.44 4.86 0.00 2.45 0.00 49 E12a_E14a KnownJunction 0 23.04 64.99 43.29 39.29 118.08 77.85 46.50 68.22 36.69 48.35 18.85 0.00 20.13 13.19 9.39 0.00 4.68 6.05 0.00 17.96 0.00 0.00 0.00 50 ER12a ExonRegion 0 48.59 128.65 107.73 95.58 176.02 125.97 92.85 116.78 57.78 118.18 28.24 24.85 46.08 14.48 17.79 3.88 9.76 11.65 16.48 26.46 0.00 6.34 0.38 51 ER13a ExonRegion 0 27.28 59.95 55.19 51.11 85.28 56.03 48.57 62.00 27.93 57.39 18.54 15.39 32.40 2.59 10.96 3.19 6.79 11.15 15.04 8.20 0.00 5.48 1.14 52 E13_Da KnownBoundary 0 35.41 62.09 65.20 61.26 66.72 73.37 54.41 94.63 34.17 55.58 20.27 25.06 32.63 0.00 10.75 8.12 7.85 8.71 22.87 15.21 0.00 6.06 4.35 53 ER13b ExonRegion 0 33.82 54.50 69.10 59.47 55.33 65.98 51.84 66.19 40.40 69.74 28.11 38.00 13.50 6.63 12.57 9.55 9.44 5.60 27.96 24.56 0.00 6.06 0.89 54 E13b_E14a KnownJunction 0 25.04 36.84 77.55 42.65 74.53 95.34 65.36 60.38 35.85 62.94 19.90 14.25 0.00 11.24 19.66 7.35 21.88 3.90 24.09 24.22 0.00 3.00 0.00 55 ER14a ExonRegion 0 45.77 103.03 98.40 82.56 130.67 142.25 107.29 128.52 69.43 123.06 52.62 48.86 33.93 8.53 19.28 12.30 20.00 18.89 41.50 47.04 0.00 5.78 1.38 56 E14_Da NovelBoundary 0 0.00 5.92 3.55 8.02 0.00 2.10 0.00 3.53 18.95 0.00 2.68 6.30 0.00 0.00 0.00 0.00 0.00 0.00 4.61 3.26 0.00 2.82 3.93 57 E14a_E15b KnownJunction 0 56.08 148.92 130.10 103.82 116.64 129.93 141.19 159.12 78.04 164.80 43.96 57.32 20.45 7.24 24.11 22.47 13.37 20.27 57.51 50.30 0.00 6.25 0.00 58 E15_Aa NovelBoundary 0 7.04 11.45 5.20 23.81 10.53 0.00 6.18 3.37 8.83 11.74 0.00 0.00 0.00 2.47 0.00 3.33 0.00 4.06 0.00 6.46 0.00 2.57 0.00 59 ER15a ExonRegion 0 8.39 13.16 6.15 15.99 14.48 5.57 13.43 7.99 10.53 7.85 2.74 3.29 5.17 1.14 0.43 1.83 3.03 0.80 3.67 3.58 0.00 1.09 0.00 60 E15_Ab KnownBoundary 0 3.78 3.16 9.34 16.75 12.90 8.69 18.24 14.70 26.24 14.08 4.95 6.30 0.00 2.35 5.07 4.10 0.00 0.00 8.85 12.08 0.00 0.00 0.00 61 ER15b ExonRegion 0 46.66 97.48 136.17 120.54 110.56 110.26 104.13 167.39 89.77 165.30 57.37 67.42 26.35 17.35 39.19 14.58 23.68 29.83 39.64 61.23 0.00 7.57 2.38 62 E15a_E16a KnownJunction 0 39.12 119.91 144.52 124.13 134.97 118.23 105.06 196.50 88.48 177.37 56.17 51.62 13.80 17.48 62.06 17.94 20.10 26.57 28.42 59.51 0.00 5.76 0.00 63 ER16a ExonRegion 0 39.95 115.77 114.15 90.35 114.83 150.40 93.96 174.35 83.67 145.29 56.68 47.08 18.56 14.37 24.44 14.11 28.31 24.18 54.38 48.97 0.78 6.93 3.64 64 E16a_E17a KnownJunction 0 70.68 152.74 129.53 78.64 199.49 163.54 108.11 167.34 86.20 138.50 46.22 75.47 25.49 13.89 21.14 15.72 26.65 21.10 51.30 44.87 3.15 10.65 3.84 65 ER17a ExonRegion 0 60.67 143.05 145.41 110.55 185.96 123.03 110.47 170.34 82.34 161.11 48.92 49.07 31.99 14.51 31.13 18.86 20.74 24.99 44.84 58.67 2.03 3.66 0.60 66 E17_Da NovelBoundary 0 0.00 16.05 11.92 6.16 8.57 2.90 2.25 19.22 8.25 4.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.75 2.72 0.00 0.00 67 E17a_E18a KnownJunction 0 93.57 144.12 152.24 126.69 173.77 108.29 136.07 188.24 73.58 173.58 36.22 51.62 35.87 18.42 35.97 15.55 21.97 25.62 46.68 68.01 0.00 5.57 0.00 68 E18_Aa NovelBoundary 0 16.37 37.16 16.76 12.49 15.79 8.29 0.00 12.49 8.68 2.93 4.47 5.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.88 0.00 0.00 0.00 69 ER18a ExonRegion 0 38.76 99.05 137.77 83.84 91.24 73.02 58.07 153.84 66.31 134.48 38.60 47.35 15.96 12.63 23.02 9.78 9.97 21.25 38.54 41.08 0.98 11.06 1.84 70 E18_Da KnownBoundary 0 13.85 85.97 67.86 32.00 28.18 5.79 18.11 48.92 22.77 55.74 10.79 5.40 20.45 0.00 0.00 0.00 0.00 4.15 4.80 9.27 0.00 6.06 0.00 71 ER18b ExonRegion 1 24.38 78.25 36.76 23.74 17.38 14.16 23.50 41.92 20.57 26.55 3.33 15.18 16.50 0.78 7.71 1.92 0.00 3.63 16.89 7.27 0.00 1.32 0.00 72 ER18c ExonRegion 0 4.23 9.15 0.61 0.34 0.67 5.04 0.00 2.59 0.00 0.29 0.00 0.00 5.86 1.62 1.45 0.00 0.00 0.46 2.39 0.00 0.00 0.00 0.00 73 IG17_AR3 ActiveIntergenicRegion 0 2.19 1.45 2.13 0.63 7.31 2.06 3.16 2.20 3.85 5.14 0.86 14.73 0.57 0.66 0.64 0.00 2.05 1.92 2.47 3.24 3.10 4.51 1.22 74 IG17_SR2 SilentIntergenicRegion 0 0.91 0.99 0.00 0.00 2.33 5.27 1.91 3.98 10.20 4.56 2.23 26.03 3.93 1.89 1.21 0.00 1.80 5.82 2.89 3.91 1.36 2.52 3.18 75 IG17_AR2 ActiveIntergenicRegion 0 0.16 0.99 2.86 0.00 1.95 3.22 1.19 4.10 6.95 3.65 1.95 18.07 0.00 2.95 1.28 0.87 0.04 2.63 4.06 3.59 0.32 2.24 2.16