Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C9orf156 Gene 0 33.15 18.68 13.20 13.41 27.70 17.71 16.35 22.89 17.73 18.58 28.57 26.13 22.38 28.10 31.93 28.59 25.83 22.24 15.93 21.94 15.32 21.68 17.04 2 421165 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 325350 Transcript 0 0.00 0.00 11.71 52.94 0.00 0.00 0.00 41.85 36.72 49.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54.39 0.00 0.00 0.00 0.00 0.00 4 375119 Transcript 0 8.56 6.91 4.79 1.67 12.96 2.45 4.21 13.79 8.04 6.45 3.74 11.83 6.98 4.29 12.25 8.65 3.89 1.72 2.48 9.93 0.73 7.82 5.22 5 375117 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 455506 Transcript 0 1.45 4.35 0.02 1.12 0.04 0.63 1.11 9.08 1.26 0.20 0.66 2.44 5.10 0.92 3.97 4.19 3.52 2.65 0.00 3.46 1.21 2.70 0.00 7 478126 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 471580 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 375118 Transcript 0 17.20 4.07 2.22 2.37 10.03 1.38 5.03 7.98 4.76 3.01 7.94 16.50 12.47 6.38 6.74 8.30 7.33 5.46 4.67 7.00 4.80 4.54 5.03 10 ER1a ExonRegion 0 18.42 8.61 0.39 0.02 9.61 8.83 11.77 5.21 1.88 4.22 16.66 0.00 0.00 9.36 19.48 13.06 9.41 7.28 7.51 10.93 3.59 8.95 6.74 11 E1_Ab KnownBoundary 0 15.56 0.00 0.00 0.00 0.00 10.22 9.01 3.66 0.00 2.34 17.21 0.00 0.00 2.30 8.90 0.00 8.32 8.46 0.00 11.70 0.00 0.00 4.35 12 E1_Ac KnownBoundary 0 11.26 13.29 1.63 0.00 0.00 0.00 13.43 2.46 1.71 0.00 0.00 0.00 0.00 0.00 0.00 17.17 0.00 5.02 4.80 3.20 0.00 9.37 0.00 13 E1_Ad KnownBoundary 0 10.96 3.35 0.00 0.00 3.90 2.90 18.02 0.00 1.77 3.33 8.05 0.00 0.00 3.00 0.00 17.43 14.31 4.93 0.00 9.78 0.00 3.12 4.35 14 E1_Ae KnownBoundary 0 101.65 39.14 7.54 3.26 86.50 106.30 64.83 24.40 8.10 15.66 19.37 0.00 0.00 7.42 14.83 43.24 56.85 22.09 34.26 33.05 20.26 35.76 38.58 15 ER1b ExonRegion 1 72.67 36.60 6.13 1.36 45.49 30.56 56.93 17.86 7.41 13.38 36.73 0.00 0.00 36.81 53.19 52.51 39.61 25.87 28.67 31.91 13.22 34.73 21.54 16 ER1c ExonRegion 1 101.03 51.25 6.94 2.82 74.56 75.43 79.17 24.66 11.53 15.98 40.20 0.00 0.00 47.32 63.63 72.32 64.70 33.63 44.81 44.96 21.30 48.89 33.48 17 ER1d ExonRegion 1 122.76 72.70 8.58 4.09 121.75 117.36 97.31 29.82 15.44 21.50 44.94 0.00 0.00 49.54 59.48 101.05 98.20 48.04 66.89 58.51 30.85 58.86 46.99 18 ER1e ExonRegion 0 69.38 44.94 8.48 6.54 85.04 87.80 51.50 30.35 15.64 20.48 27.22 4.42 0.94 21.63 22.86 60.33 71.63 40.13 43.13 34.00 20.32 34.96 34.95 19 E1a_E2a KnownJunction 0 20.45 9.87 4.14 9.72 15.20 17.21 3.89 22.43 12.33 14.75 6.69 12.60 6.17 0.00 0.00 8.20 4.21 23.92 7.81 0.00 2.97 2.94 0.00 20 E1a_E3a KnownJunction 0 0.00 0.00 1.48 1.37 0.00 0.00 0.00 2.09 5.76 1.34 4.16 0.00 0.00 0.00 0.00 7.35 4.49 0.00 3.67 0.00 3.03 0.00 4.10 21 ER2a ExonRegion 0 15.19 18.49 16.08 12.79 19.62 16.02 10.49 33.16 23.39 24.98 47.95 24.99 26.05 37.33 34.12 51.60 48.44 28.54 29.92 37.17 12.73 33.90 17.22 22 E2a_E3a KnownJunction 0 32.08 46.04 29.98 23.14 88.03 17.94 16.56 58.00 31.11 39.49 35.22 62.87 59.41 33.90 29.42 88.44 34.69 42.61 36.33 24.74 22.24 14.51 20.15 23 ER3a ExonRegion 0 21.92 47.89 34.54 28.16 70.67 73.39 38.08 53.78 46.79 46.71 70.24 63.74 72.93 71.25 63.31 77.50 77.76 49.63 35.95 37.02 28.19 59.41 46.93 24 E3_Da KnownBoundary 0 0.00 6.12 0.00 2.03 0.00 0.00 4.37 16.27 0.00 2.31 0.00 0.00 0.00 0.00 0.00 11.79 3.46 4.81 0.00 2.81 3.15 5.69 0.00 25 E3a_E4a KnownJunction 0 6.67 5.06 13.63 6.33 0.00 0.00 6.18 14.99 6.13 5.24 15.48 26.41 32.30 16.89 24.48 15.89 8.79 6.22 0.00 0.00 2.72 5.57 7.85 26 E3a_E5b KnownJunction 1 58.83 64.13 22.74 24.34 74.79 29.13 35.07 61.94 36.28 42.74 50.28 97.83 39.61 60.75 75.53 87.84 59.56 52.27 40.38 17.77 16.25 44.39 48.32 27 ER3b ExonRegion 0 1.45 4.35 0.02 1.12 0.04 0.63 1.11 9.08 1.26 0.20 0.66 2.44 5.10 0.92 3.97 4.19 3.52 2.65 0.00 3.46 1.21 2.70 0.00 28 E4_Aa NovelBoundary 0 3.78 6.05 0.00 1.93 0.00 0.00 1.99 1.68 1.53 1.58 0.00 12.15 6.82 9.65 0.00 3.67 4.77 0.00 0.00 2.75 0.00 10.84 0.00 29 ER4a ExonRegion 1 5.92 7.75 6.74 8.99 5.75 0.47 7.41 12.38 10.50 4.09 12.41 25.92 32.83 14.86 11.64 15.82 12.58 15.86 2.20 12.88 9.05 9.21 4.21 30 E4_Da NovelBoundary 0 9.93 21.44 2.78 10.29 11.54 2.84 6.49 8.17 8.33 1.21 8.90 23.56 21.91 12.13 18.05 6.49 12.81 11.11 0.00 15.15 11.18 12.25 0.00 31 E4_Db NovelBoundary 1 7.19 16.05 0.00 3.90 4.33 7.67 6.76 4.19 7.00 1.67 5.16 35.41 0.00 12.66 19.41 16.92 9.54 4.60 0.00 6.01 5.68 8.33 11.69 32 E4b_E5b KnownJunction 0 6.22 9.01 6.74 5.39 3.99 0.00 3.67 13.14 5.82 5.53 9.58 19.06 12.17 11.77 13.97 4.19 4.30 4.64 0.00 11.51 0.00 8.39 0.00 33 ER4b ExonRegion 0 6.57 13.88 4.90 8.18 6.09 1.83 3.47 10.13 7.03 3.80 9.20 10.75 15.69 8.68 14.61 4.51 5.69 7.71 0.11 12.99 5.02 10.78 0.00 34 I4 Intron 0 5.11 4.40 1.16 1.55 6.81 2.57 3.54 8.19 5.15 1.74 9.34 20.05 15.02 8.00 4.08 8.69 7.14 5.96 2.84 7.31 6.17 5.30 5.60 35 I4_AR1 ActiveIntronRegion 0 5.14 4.42 1.17 1.56 6.84 2.58 3.55 8.23 5.18 1.75 9.38 20.15 15.09 8.04 4.10 8.74 7.17 5.98 2.85 7.34 6.20 5.33 5.63 36 E5_Aa NovelBoundary 1 17.04 2.83 1.60 3.63 11.88 2.90 14.53 3.90 4.05 0.00 0.00 58.82 41.39 7.42 8.90 8.37 4.77 2.20 4.42 3.26 3.09 7.78 0.00 37 ER5a ExonRegion 0 17.20 4.07 2.22 2.37 10.03 1.38 5.03 7.98 4.76 3.01 7.94 16.50 12.47 6.38 6.74 8.30 7.33 5.46 4.67 7.00 4.80 4.54 5.03 38 E5_Ab KnownBoundary 0 21.78 2.50 0.00 3.33 0.00 0.00 7.64 9.32 2.40 2.77 5.00 0.00 0.00 7.24 9.52 26.75 7.67 15.92 0.00 3.07 0.00 2.76 0.00 39 ER5b ExonRegion 0 99.03 53.27 36.53 36.29 68.72 46.54 54.76 60.69 53.50 66.17 97.07 70.08 87.70 90.61 80.59 88.35 71.16 57.03 58.94 61.78 43.39 69.44 44.26 40 E5_Da KnownBoundary 0 153.21 62.95 39.00 35.99 99.41 61.84 41.56 47.07 33.85 42.84 83.71 54.62 82.14 88.82 111.26 111.59 76.02 56.13 48.94 59.70 28.66 82.48 61.03 41 ER5c ExonRegion 0 106.21 50.15 36.13 43.02 76.47 54.86 36.24 64.08 42.89 57.97 65.88 64.99 86.68 82.71 86.76 79.35 58.42 73.00 38.80 62.27 37.54 53.37 37.75 42 E5_Db KnownBoundary 0 61.27 14.73 12.45 42.75 44.65 33.28 13.87 65.76 38.25 43.46 20.22 23.86 6.98 24.55 53.90 43.41 20.85 43.24 22.12 38.03 29.96 21.68 12.98 43 E5b_E5c KnownJunction 0 0.00 0.00 11.71 52.94 0.00 0.00 0.00 41.85 36.72 49.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54.39 0.00 0.00 0.00 0.00 0.00 44 E5_Ac KnownBoundary 0 37.04 12.63 16.20 20.11 24.70 24.36 8.39 15.98 19.68 31.94 26.48 36.61 26.62 22.66 41.16 28.03 24.96 35.32 23.81 29.02 18.35 19.66 18.87 45 ER5d ExonRegion 0 112.60 40.26 26.96 55.06 74.92 57.21 27.54 80.55 54.59 73.17 66.11 97.85 78.79 87.38 135.78 115.91 62.72 88.69 64.98 90.21 48.92 69.17 51.68 46 ER5e ExonRegion 0 96.30 38.38 48.69 52.12 58.93 38.74 33.82 59.73 44.75 58.16 68.78 74.81 71.22 97.50 90.68 77.07 70.36 62.93 50.15 70.58 40.69 66.65 50.16 47 E5_Dc KnownBoundary 0 123.95 51.50 52.51 50.11 69.69 55.99 54.06 59.35 45.02 52.25 80.81 75.17 82.14 98.59 91.11 65.71 50.77 55.71 36.90 45.19 35.46 72.50 36.96 48 ER5f ExonRegion 0 70.95 53.58 37.05 50.31 67.30 43.97 42.11 47.76 49.89 49.89 80.97 82.35 58.22 77.71 71.84 63.25 51.67 54.31 23.20 56.98 50.40 56.71 36.39 49 E5_Dd KnownBoundary 0 60.01 61.70 22.29 46.08 83.11 51.16 47.65 35.41 45.54 42.52 66.07 88.98 50.97 84.17 55.88 67.33 78.07 54.26 36.80 49.22 49.48 60.80 36.02 50 ER5g ExonRegion 0 78.38 46.84 35.68 34.71 67.59 45.59 42.19 42.78 41.01 47.53 66.11 54.74 30.50 64.85 83.97 55.92 60.09 64.68 35.36 48.17 42.21 48.54 46.19 51 E5_De NovelBoundary 0 112.61 70.12 51.33 23.17 96.77 70.81 36.74 39.10 43.49 41.72 75.23 16.66 27.27 47.32 75.90 65.54 41.33 84.73 21.65 30.04 56.71 49.48 37.13 52 E5_Df NovelBoundary 0 3.78 0.00 1.74 1.63 3.90 0.00 7.91 0.00 4.57 0.00 2.37 0.00 0.00 4.89 0.00 12.65 0.00 2.24 12.89 15.15 2.35 0.00 0.00 53 E5f_E6a KnownJunction 0 128.84 64.66 25.72 26.40 128.27 63.26 22.83 39.02 43.11 39.46 66.86 24.91 13.64 76.81 110.64 69.30 57.60 63.55 42.92 38.09 55.41 30.98 45.16 54 ER5h ExonRegion 0 98.16 50.28 35.07 21.90 100.11 53.43 26.07 38.03 42.38 41.05 67.78 17.47 22.80 59.64 86.84 63.95 44.85 75.95 24.60 30.52 51.29 38.72 38.28 55 I5_AR2 ActiveIntronRegion 0 13.76 10.89 8.58 5.26 4.78 3.67 13.81 8.64 5.91 3.44 1.10 0.00 4.02 6.03 2.90 6.16 12.02 3.70 6.37 13.83 1.73 0.60 2.73 56 I5_SR1 SilentIntronRegion 0 12.70 9.15 5.67 5.45 5.35 3.67 14.56 7.78 6.18 3.44 1.93 0.00 4.69 5.68 0.36 6.32 4.95 2.54 6.37 14.10 0.00 0.78 0.00 57 E6_Aa NovelBoundary 0 10.52 6.05 1.83 1.43 19.86 14.08 8.66 2.42 9.69 0.00 4.84 12.60 13.64 2.12 5.19 0.00 9.26 3.23 0.00 6.01 3.15 5.45 15.45 58 ER6a ExonRegion 0 43.57 31.20 24.00 26.46 37.87 26.23 23.05 38.25 30.96 32.30 43.93 19.69 10.56 45.79 64.47 38.37 31.32 28.72 20.56 32.23 24.28 34.86 25.11 59 E6_Da KnownBoundary 0 12.89 20.33 20.99 15.15 14.18 8.06 11.75 38.73 23.26 20.36 4.84 24.61 14.28 14.48 14.09 15.47 8.79 1.66 4.42 17.51 2.84 27.74 7.17 60 ER6b ExonRegion 0 8.56 6.91 4.79 1.67 12.96 2.45 4.21 13.79 8.04 6.45 3.74 11.83 6.98 4.29 12.25 8.65 3.89 1.72 2.48 9.93 0.73 7.82 5.22 61 IG40_SR9 SilentIntergenicRegion 0 4.28 18.90 5.68 10.57 10.65 17.19 17.77 18.00 10.34 10.08 3.63 15.29 16.81 7.35 6.43 1.08 3.06 3.01 2.98 10.75 0.00 9.55 3.28 62 IG40_AR11 ActiveIntergenicRegion 0 6.35 23.05 3.68 15.90 16.05 5.50 19.42 17.00 11.12 12.42 0.00 23.09 0.00 10.02 5.32 2.97 6.60 1.85 3.19 6.03 0.00 14.24 2.94 63 IG40_SR8 SilentIntergenicRegion 0 7.07 23.96 8.09 19.00 17.10 16.45 18.40 12.41 12.18 11.42 2.70 9.93 10.99 6.48 7.74 3.58 4.69 4.46 5.52 8.22 1.54 13.10 7.68 64 IG40_AR10 ActiveIntergenicRegion 0 12.02 19.96 4.13 13.89 12.38 10.28 13.42 16.48 6.62 11.00 5.30 4.78 4.23 6.22 6.25 2.95 5.83 6.54 11.12 14.79 2.62 8.58 10.14 65 IG40_SR7 SilentIntergenicRegion 0 13.44 14.72 4.27 12.82 14.93 9.11 14.70 15.74 9.27 8.81 1.75 5.34 5.04 3.43 3.55 4.14 5.83 5.98 5.04 10.32 1.01 7.99 8.22 66 IG40_AR9 ActiveIntergenicRegion 0 13.41 7.67 9.86 12.45 11.99 6.47 12.34 13.13 10.15 8.71 2.96 6.26 7.26 3.23 6.36 5.94 3.25 6.57 7.32 13.07 1.24 6.14 5.53