Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CTSL1 Gene 0 304.81 79.43 125.81 128.23 190.35 99.26 86.42 157.80 180.56 130.67 0.25 0.00 0.45 0.06 0.09 0.13 0.57 63.39 96.95 53.75 1040.95 1632.20 1069.61 2 343150 Transcript 0 14.79 10.63 16.00 31.70 6.63 17.29 6.28 20.66 37.15 24.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.80 25.34 21.39 272.24 300.59 321.02 3 340342 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 375894 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 495822 Transcript 0 5.29 1.02 0.61 0.68 1.34 0.00 0.00 2.59 1.85 1.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 6.25 2.94 6 342020 Transcript 0 19.29 4.85 4.00 8.95 8.74 4.63 6.94 8.87 12.48 4.73 0.00 0.00 0.00 0.00 1.11 0.00 0.00 9.42 4.63 4.18 30.72 33.56 29.30 7 482054 Transcript 0 7.11 0.00 14.61 15.28 12.05 0.00 0.00 3.66 11.26 17.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.23 25.88 15.60 277.01 120.75 112.25 8 ER1a ExonRegion 0 0.95 1.87 1.32 0.17 2.43 6.56 1.70 0.26 3.11 1.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.62 1.70 1.45 5.98 9.58 5.68 9 E1_Ab KnownBoundary 0 20.97 31.84 0.00 2.06 35.74 88.36 26.41 2.55 6.74 3.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.56 12.61 9.01 11.24 3.12 15.02 10 E1_Ac KnownBoundary 0 3.56 3.35 0.00 0.00 25.64 52.92 15.28 0.00 3.44 3.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.15 37.65 6.26 54.92 36.25 25.35 11 E1_Ad KnownBoundary 0 14.22 39.47 1.45 0.00 8.32 34.53 35.77 2.55 3.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22.51 33.22 6.39 71.41 74.03 132.82 12 E1_Ae KnownBoundary 0 347.69 34.53 31.13 25.67 233.53 259.17 172.72 22.18 42.82 34.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50.74 105.23 33.30 979.60 694.02 1660.74 13 ER1b ExonRegion 0 30.90 47.59 11.52 6.81 53.51 143.40 56.40 13.83 17.29 11.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 60.98 65.62 17.02 128.70 84.59 135.09 14 ER1c ExonRegion 0 84.98 50.23 17.52 12.06 81.48 172.74 88.04 16.25 27.30 17.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 68.37 96.04 24.26 349.62 241.48 470.30 15 ER1d ExonRegion 0 285.38 54.91 34.31 31.35 238.59 272.93 172.56 25.93 60.73 41.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 96.08 149.18 38.30 1080.92 842.44 1833.93 16 ER1e ExonRegion 0 299.95 60.18 47.29 42.24 191.07 196.67 115.54 35.23 72.94 54.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 82.51 103.51 43.78 873.86 736.02 1477.50 17 E1_Da KnownBoundary 0 164.99 53.21 24.57 42.79 148.22 141.45 53.70 28.59 62.09 32.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 80.79 122.83 72.87 377.83 212.05 277.26 18 E1a_E2a KnownJunction 0 68.90 20.72 36.04 18.15 15.79 11.58 14.44 18.61 47.77 25.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.98 31.53 26.21 386.36 188.42 67.44 19 E1a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 ER1f ExonRegion 0 57.18 17.23 30.41 34.47 42.76 43.44 19.19 19.67 45.32 33.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 48.08 63.07 29.94 613.47 210.74 208.13 21 E1_Db KnownBoundary 0 35.12 12.50 32.61 23.94 23.09 5.79 9.01 23.41 30.27 18.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.65 27.29 15.66 435.41 192.09 235.35 22 E1b_E2a KnownJunction 0 7.11 0.00 14.61 15.28 12.05 0.00 0.00 3.66 11.26 17.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.23 25.88 15.60 277.01 120.75 112.25 23 ER1g ExonRegion 0 10.37 11.59 25.73 40.07 5.92 10.17 6.97 26.70 43.05 29.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.97 27.64 20.09 382.37 446.04 521.09 24 E1c_E2a KnownJunction 0 33.04 18.42 20.96 54.87 11.54 35.15 10.16 35.04 65.31 43.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22.80 46.68 42.63 428.36 446.15 436.29 25 ER2a ExonRegion 0 199.87 50.71 132.55 134.75 157.99 128.23 68.49 144.06 223.20 129.55 0.00 0.00 0.00 0.03 0.00 0.00 0.00 124.51 161.64 75.44 1520.28 1737.44 1673.83 26 E2_Da NovelBoundary 0 510.83 75.64 169.48 195.58 320.12 247.58 137.39 139.36 235.88 142.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 162.99 209.51 69.41 1416.80 2175.56 3241.07 27 E2a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 E2b_E3a KnownJunction 0 524.83 65.98 143.40 216.32 387.69 278.70 134.70 140.43 204.57 168.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 112.50 233.14 82.39 1535.91 2304.22 1924.43 29 ER2b ExonRegion 0 473.47 63.04 154.26 200.55 335.16 252.93 122.54 141.54 224.75 164.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 146.25 237.96 71.24 1591.16 2301.05 2584.14 30 E3_Ab NovelBoundary 0 192.03 44.20 57.77 70.89 124.53 85.29 80.86 68.88 96.44 69.22 0.00 0.00 0.00 0.00 0.00 3.50 0.00 44.31 58.35 45.51 517.94 1074.40 515.17 31 ER3a ExonRegion 0 516.17 81.09 162.36 191.14 352.53 221.66 131.24 144.54 218.31 165.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 116.18 226.16 72.34 1529.37 2439.80 1785.48 32 ER3b ExonRegion 0 410.81 138.41 189.88 202.16 301.20 246.41 191.02 207.75 279.61 192.71 0.00 0.00 1.79 0.00 0.00 0.00 0.00 102.98 155.56 103.66 1858.88 2808.84 1489.47 33 E3a_E4a KnownJunction 0 579.95 148.39 186.42 230.67 190.15 124.64 154.66 255.60 265.10 226.07 0.00 0.00 6.17 0.00 0.00 0.00 0.00 70.55 136.85 91.27 2025.06 2918.45 1389.71 34 ER4a ExonRegion 0 548.83 145.84 192.38 237.09 273.14 144.43 126.85 263.63 302.88 233.91 0.67 0.00 0.26 0.00 0.00 0.44 0.00 129.12 197.95 96.82 2226.92 3363.23 1966.55 35 E4a_E5a KnownJunction 0 698.57 116.82 163.45 288.11 412.90 107.95 147.19 278.24 298.96 244.87 0.00 0.00 0.00 0.00 0.00 4.36 0.00 101.60 241.80 112.56 2223.86 4039.76 2327.94 36 ER5a ExonRegion 0 551.04 149.53 188.80 252.53 331.77 138.19 142.85 273.97 324.43 244.31 0.74 0.00 1.44 0.01 0.00 0.64 0.00 118.67 176.95 114.88 2180.83 3187.83 2136.08 37 E5_Ab KnownBoundary 0 894.08 203.12 181.31 236.07 533.45 187.62 200.10 289.24 330.67 230.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 160.88 192.29 103.16 2221.88 2894.87 2095.24 38 ER5b ExonRegion 0 766.13 195.49 183.82 235.03 382.46 184.93 197.59 287.80 348.56 256.94 0.00 0.00 1.19 0.70 0.00 1.57 1.85 135.96 242.96 104.51 2013.90 3471.60 2305.33 39 E5_Da KnownBoundary 0 26.52 2.76 5.12 10.82 0.00 2.73 9.89 8.38 13.37 1.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.47 4.61 8.88 40.22 33.68 16.56 40 E5a_E6a KnownJunction 0 950.32 246.07 244.26 303.29 373.51 237.87 233.22 333.73 409.05 257.39 0.00 0.00 7.95 0.00 0.00 0.00 0.00 123.66 216.57 111.47 2269.82 3469.98 2608.18 41 ER5c ExonRegion 0 19.29 4.85 4.00 8.95 8.74 4.63 6.94 8.87 12.48 4.73 0.00 0.00 0.00 0.00 1.11 0.00 0.00 9.42 4.63 4.18 30.72 33.56 29.30 42 E5_Db NovelBoundary 0 273.90 297.51 64.13 74.98 92.53 98.64 110.45 97.39 62.90 86.15 12.79 22.51 6.33 4.41 18.91 53.23 36.84 87.63 91.30 91.59 51.95 60.68 66.58 43 ER6a ExonRegion 0 632.47 210.49 236.66 240.28 350.47 189.98 171.16 306.91 371.25 253.29 0.91 0.00 3.04 0.33 0.00 0.08 1.41 109.50 181.12 116.61 2066.77 3032.83 2200.58 44 E6_Da KnownBoundary 0 631.89 190.56 263.74 248.15 446.18 205.96 171.84 390.12 463.02 298.03 0.00 0.00 0.00 2.47 0.00 0.00 0.00 146.74 209.23 104.63 2135.52 3354.25 2193.83 45 ER6b ExonRegion 0 687.56 138.14 236.76 238.11 634.30 219.52 184.25 304.81 400.58 274.44 0.46 0.00 0.60 0.59 0.00 0.00 3.42 125.85 189.27 93.11 2139.08 3165.21 2283.11 46 E6b_E7a KnownJunction 0 735.91 138.26 263.98 264.83 665.54 222.77 155.76 271.50 357.92 267.25 2.32 0.00 6.17 0.00 0.00 0.00 0.00 84.07 178.73 111.02 1920.04 3216.90 2303.10 47 E6b_E8a NovelJunction 0 0.00 2.83 11.27 8.52 0.00 29.64 4.24 24.23 16.70 2.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.12 19.35 11.61 48 I6 Intron 0 65.41 17.91 10.52 13.82 23.56 12.77 11.34 20.62 18.27 8.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.91 2.30 3.92 12.70 55.88 28.45 49 I6_SR1 SilentIntronRegion 0 67.32 19.43 9.63 14.47 21.29 11.86 10.34 22.54 24.26 8.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.67 2.79 3.65 7.12 63.63 24.03 50 I6_AR1 ActiveIntronRegion 0 71.58 22.74 16.82 27.38 44.76 4.83 9.99 34.73 22.68 11.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 6.38 4.41 84.10 21.09 51 I6_SR2 SilentIntronRegion 0 64.20 16.07 11.66 12.77 26.24 14.61 12.99 18.05 10.80 8.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.64 1.78 4.27 20.45 45.95 35.09 52 E7_Aa NovelBoundary 0 125.36 41.18 13.54 29.30 12.48 10.96 25.66 14.13 17.36 17.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.95 0.00 0.00 51.58 66.81 35.51 53 ER7a ExonRegion 0 674.94 158.41 331.16 295.08 440.12 152.59 178.90 368.20 385.25 272.39 0.77 0.00 1.39 0.00 0.00 0.00 1.20 97.43 195.20 105.79 2048.80 3346.80 2340.38 54 E7a_E8a KnownJunction 0 763.84 135.17 344.90 292.94 429.63 189.32 158.15 416.94 399.91 317.88 2.11 0.00 0.00 0.00 0.00 0.00 9.54 113.21 177.98 51.26 2257.84 3368.15 1640.76 55 I7 Intron 0 98.19 24.66 20.31 18.72 25.20 17.82 18.57 24.00 28.22 10.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.03 7.34 2.77 23.18 72.66 25.89 56 I7_AR1 ActiveIntronRegion 0 73.70 18.98 11.38 11.51 21.02 21.56 12.40 21.57 20.83 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.44 1.81 1.54 17.14 53.73 20.20 57 I7_AR2 ActiveIntronRegion 0 103.90 26.01 22.34 20.37 26.24 17.09 20.00 24.61 29.92 13.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.95 8.59 3.05 24.61 77.07 27.22 58 E8_Aa NovelBoundary 0 142.69 25.00 38.64 22.97 23.43 13.63 21.68 61.45 21.99 15.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 16.28 7.48 31.44 86.71 39.52 59 ER8a ExonRegion 0 616.84 169.10 314.92 293.35 344.89 173.60 186.82 414.57 416.68 303.22 1.23 0.00 0.00 0.00 0.00 0.00 5.50 103.45 136.83 97.36 2169.69 3077.48 1681.49 60 E8_Da KnownBoundary 0 594.92 212.26 391.32 369.35 475.55 154.17 254.82 468.86 442.44 338.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 105.00 129.60 105.08 1927.95 3860.59 1833.60 61 ER8b ExonRegion 0 440.29 103.03 241.43 200.06 283.38 92.89 104.11 307.94 281.78 220.56 0.31 0.00 0.00 0.00 0.00 0.00 1.08 50.60 83.13 57.23 987.83 2468.76 963.75 62 ER8c ExonRegion 0 163.32 10.17 19.20 10.45 33.89 21.39 21.85 31.11 19.56 21.98 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.92 0.00 1.42 2.57 114.59 85.16 63 ER8d ExonRegion 0 10.58 2.03 1.23 1.36 2.68 0.00 0.00 5.19 3.71 2.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 12.50 5.87 64 IG4_AR1 ActiveIntergenicRegion 0 24.44 5.53 1.23 0.00 1.82 1.15 0.90 1.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.17 0.00 0.00 8.50 4.27