Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 NINJ1 Gene 0 76.96 7.44 107.37 26.60 26.18 22.99 20.58 63.65 66.33 38.45 66.82 12.18 9.38 11.09 19.85 17.46 38.97 23.49 32.27 20.90 104.17 121.91 143.15 2 375446 Transcript 0 14.39 0.00 3.36 0.91 4.87 5.92 4.91 2.69 1.12 0.19 5.92 0.00 0.00 1.07 3.03 2.80 7.61 0.65 3.47 0.73 8.39 7.55 8.27 3 470314 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 490564 Transcript 0 5.35 0.57 2.87 1.16 0.00 0.51 2.10 4.31 3.08 1.61 1.50 3.00 0.00 0.55 1.51 1.67 1.98 0.77 2.68 1.19 1.96 18.73 27.58 5 461162 Transcript 0 2.73 0.00 0.07 0.49 0.00 0.00 0.00 2.53 0.01 0.00 0.00 0.00 0.00 0.00 0.61 0.00 0.00 0.82 0.07 0.00 1.30 2.68 5.74 6 489274 Transcript 0 9.55 1.95 7.14 1.52 4.88 3.13 4.66 8.32 5.02 3.68 2.58 7.07 4.98 2.80 5.15 2.05 2.80 2.42 2.79 3.35 2.39 33.18 44.08 7 ER1a ExonRegion 0 26.39 0.00 3.51 0.45 8.39 10.93 8.49 1.93 1.62 0.09 11.60 0.00 0.00 2.13 5.69 5.59 13.98 0.83 6.93 1.46 15.12 14.05 13.24 8 E1_Ab KnownBoundary 0 45.56 2.89 11.12 1.90 12.82 23.17 23.72 2.30 0.00 2.69 10.58 5.70 0.00 7.30 5.19 4.36 22.35 2.20 4.80 0.00 11.49 17.57 19.80 9 E1_Ac KnownBoundary 0 445.41 0.00 60.41 9.36 161.97 143.61 100.82 30.39 28.04 13.86 58.49 0.00 0.00 9.77 31.15 39.99 23.47 24.75 40.47 28.25 111.94 95.34 271.20 10 ER1b ExonRegion 0 222.68 0.43 14.70 2.73 71.82 94.30 60.90 4.46 8.00 1.81 49.75 0.00 0.00 10.94 30.84 21.59 31.62 1.85 29.67 18.70 77.71 62.72 167.70 11 ER1c ExonRegion 0 103.57 1.26 14.82 2.40 30.28 40.75 25.42 4.53 9.28 5.73 27.11 1.48 0.00 5.13 7.25 8.84 15.11 1.43 16.30 9.69 44.28 36.38 87.60 12 E1a_E2a KnownJunction 0 3.11 0.00 0.00 0.00 0.00 0.00 0.00 2.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E1a_E3a KnownJunction 0 6.82 0.00 34.95 4.93 0.00 8.69 8.44 9.82 25.67 14.99 21.37 6.30 0.00 7.18 8.90 0.00 11.59 2.24 4.52 5.31 20.51 19.90 32.44 14 E1a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 I1_AR2 ActiveIntronRegion 0 0.63 0.00 1.64 0.00 0.53 0.18 0.13 2.37 1.47 2.39 1.35 1.07 0.00 0.11 0.20 0.89 0.33 0.00 0.49 0.42 2.42 23.66 30.17 16 I1_SR3 SilentIntronRegion 0 0.95 0.39 2.93 1.04 0.00 0.47 0.85 1.99 3.43 0.66 2.86 0.46 0.00 0.26 0.39 0.38 1.70 0.35 1.23 0.41 2.83 17.14 28.86 17 ER2a ExonRegion 0 1.97 0.00 0.21 0.00 0.00 0.00 0.00 3.49 0.04 0.00 0.00 0.00 0.00 0.00 1.83 0.00 0.00 0.52 0.22 0.00 3.90 8.04 17.21 18 E2a_E3a KnownJunction 0 3.11 0.00 0.00 1.47 0.00 0.00 0.00 2.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.95 0.00 0.00 0.00 0.00 0.00 19 I2 Intron 0 1.95 0.32 4.08 0.68 0.51 0.42 1.25 2.89 3.30 1.74 1.89 0.27 0.18 0.40 0.57 1.28 1.54 0.65 1.26 0.94 4.21 26.88 42.66 20 I2_SR1 SilentIntronRegion 0 1.78 0.34 3.91 0.67 0.55 0.42 1.20 2.77 3.28 1.79 1.91 0.29 0.20 0.43 0.58 1.31 1.52 0.69 1.12 0.87 4.37 26.19 42.24 21 I2_AR1 ActiveIntronRegion 0 4.43 0.00 6.63 0.78 0.00 0.35 2.02 4.82 3.69 0.98 1.72 0.00 0.00 0.00 0.39 0.78 1.79 0.00 3.38 2.03 1.84 37.40 49.21 22 ER3a ExonRegion 1 26.53 0.00 63.67 9.74 0.59 9.85 5.20 30.18 36.21 19.71 53.08 8.34 3.65 13.23 26.70 3.14 30.38 16.73 19.94 16.51 98.19 102.56 73.09 23 E3_Ab KnownBoundary 1 78.75 0.00 117.94 19.88 3.57 16.64 8.57 64.61 74.02 33.90 107.29 19.36 0.00 24.60 32.39 3.42 52.55 26.28 41.41 23.01 158.71 193.87 108.67 24 ER3b ExonRegion 0 51.56 9.54 189.59 43.67 52.67 52.55 28.45 107.72 132.25 67.60 150.64 21.10 9.17 19.74 37.30 31.08 66.07 49.54 66.98 42.52 195.31 202.72 265.69 25 E3_Da KnownBoundary 0 0.00 0.00 2.72 0.00 0.00 0.00 2.12 0.00 5.90 3.14 2.42 0.00 0.00 0.00 4.45 0.00 3.55 0.00 0.00 0.00 5.37 17.45 59.16 26 E3a_E4b KnownJunction 0 103.28 28.02 247.66 52.74 322.50 213.80 120.21 176.86 185.27 112.74 269.23 36.91 13.64 31.20 76.77 37.60 115.85 76.61 94.59 63.73 373.32 333.54 423.14 27 ER3c ExonRegion 0 5.35 0.57 2.87 1.16 0.00 0.51 2.10 4.31 3.08 1.61 1.50 3.00 0.00 0.55 1.51 1.67 1.98 0.77 2.68 1.19 1.96 18.73 27.58 28 E4_Aa NovelBoundary 0 6.52 0.00 11.47 5.63 4.33 2.73 2.25 18.98 6.74 4.73 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 8.82 16.82 29 ER4a ExonRegion 0 9.55 1.95 7.14 1.52 4.88 3.13 4.66 8.32 5.02 3.68 2.58 7.07 4.98 2.80 5.15 2.05 2.80 2.42 2.79 3.35 2.39 33.18 44.08 30 E4_Ab KnownBoundary 0 10.96 0.00 16.97 1.30 4.16 0.00 2.25 20.74 6.74 2.74 0.00 0.00 0.00 0.00 5.81 0.00 3.93 4.44 3.48 5.69 0.00 37.72 84.00 31 ER4b ExonRegion 0 117.04 14.05 343.37 75.13 43.67 56.41 56.22 193.08 219.01 131.81 223.78 26.40 27.39 32.96 48.22 49.69 127.97 87.65 107.01 57.30 351.65 329.02 366.45 32 E4a_E5a KnownJunction 0 183.44 7.96 364.15 46.51 19.10 39.35 32.90 184.67 229.86 124.26 258.17 19.06 32.30 16.72 20.64 39.48 124.26 54.39 96.57 70.76 391.30 296.55 352.98 33 I4 Intron 0 6.04 0.72 4.73 1.79 1.89 1.73 1.60 4.02 2.98 1.71 2.10 0.63 0.11 0.12 0.21 0.35 1.07 0.73 1.97 0.81 3.83 31.52 42.69 34 I4_SR1 SilentIntronRegion 0 2.08 0.00 3.89 0.67 0.44 0.60 2.17 0.84 0.60 1.96 0.95 2.92 0.00 0.00 0.00 0.00 1.62 1.35 0.52 0.00 2.89 20.84 37.07 35 I4_AR1 ActiveIntronRegion 0 5.69 1.24 4.95 2.28 3.61 2.02 2.24 4.62 3.08 1.69 2.79 0.00 0.00 0.16 0.00 0.00 1.21 0.67 2.24 1.30 6.47 33.96 44.82 36 I4_SR2 SilentIntronRegion 0 7.42 0.72 4.90 1.94 1.63 1.96 1.16 4.75 3.67 1.64 2.18 0.18 0.20 0.14 0.36 0.60 0.84 0.56 2.31 0.86 3.02 33.84 43.59 37 ER5a ExonRegion 0 242.87 23.06 313.65 67.23 41.07 51.00 44.81 171.66 171.24 110.16 162.25 22.15 21.86 27.88 48.83 40.36 91.32 75.54 75.49 57.89 272.97 281.00 314.38 38 E5_Da KnownBoundary 0 151.88 27.69 258.65 68.86 61.55 101.48 67.66 187.54 162.30 109.73 177.15 25.81 6.49 31.26 74.91 33.15 65.08 46.10 94.12 59.19 265.64 247.69 259.08 39 ER5b ExonRegion 0 94.85 22.24 235.12 72.15 104.69 73.44 65.72 162.50 155.62 95.19 165.44 17.05 10.33 30.58 43.52 38.41 101.61 37.71 68.34 47.94 239.03 278.38 254.57 40 E5_Db KnownBoundary 0 126.84 46.64 314.80 102.82 232.68 73.08 78.30 188.41 171.79 101.14 211.11 17.71 6.49 32.37 27.94 75.54 144.09 43.07 90.45 51.13 262.99 364.22 389.77 41 ER5c ExonRegion 0 183.75 12.55 183.70 61.75 68.22 33.16 34.88 112.86 120.55 58.37 118.11 19.88 14.81 13.61 29.76 37.51 77.79 22.65 58.97 30.10 189.54 209.82 241.93 42 ER5d ExonRegion 0 2.38 0.00 3.22 1.36 1.34 0.92 1.32 3.46 0.62 0.29 0.24 0.00 0.00 0.00 0.36 0.00 1.24 0.46 0.00 0.00 1.65 1.04 3.30 43 IG21_SR2 SilentIntergenicRegion 0 0.99 0.85 3.12 0.69 0.52 0.27 0.52 7.98 2.88 1.46 0.00 0.11 0.11 0.15 0.26 0.19 0.19 0.12 0.82 0.72 1.03 3.05 13.96