Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SLC35D2 Gene 0 36.16 22.79 41.81 10.63 47.39 83.25 31.72 53.67 29.87 27.74 0.18 5.24 0.72 25.83 30.84 2.41 10.09 4.19 18.44 13.69 41.77 58.36 26.92 2 375259 Transcript 0 0.00 0.00 0.92 0.00 0.00 1.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.71 0.00 1.87 3 253270 Transcript 0 61.38 35.30 64.98 20.82 106.72 177.56 63.45 85.87 51.55 40.11 0.00 5.86 0.82 45.31 41.51 3.44 12.02 5.47 37.83 20.21 51.64 105.09 32.57 4 375257 Transcript 0 17.26 8.52 9.13 4.32 14.31 9.01 13.17 20.10 13.34 6.88 0.00 3.67 0.00 3.72 5.38 0.00 5.61 2.81 3.47 3.69 9.31 8.95 9.38 5 482643 Transcript 0 1.78 1.44 2.65 0.73 1.26 4.87 1.92 3.48 1.21 1.09 0.00 0.37 0.00 0.39 1.81 0.28 1.59 1.07 2.71 2.71 1.87 0.34 1.52 6 490599 Transcript 0 0.00 0.00 0.00 0.00 11.80 28.11 7.91 15.28 9.55 5.99 0.00 0.00 0.00 2.47 6.30 0.00 0.00 0.00 0.00 5.56 2.35 6.25 0.00 7 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 1.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 1.42 0.00 0.42 8 ER1b ExonRegion 0 0.00 1.49 0.00 0.00 0.00 12.23 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.78 0.00 0.00 5.10 0.00 7.64 0.00 6.66 9 ER1c ExonRegion 0 0.00 2.03 0.00 0.00 0.00 18.34 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.97 0.00 0.00 6.37 2.13 11.02 0.00 16.15 10 ER1d ExonRegion 0 2.86 12.02 10.96 0.51 2.66 10.64 5.00 10.63 3.89 9.15 0.00 0.90 0.00 5.09 3.56 2.47 1.82 2.18 4.80 3.80 27.31 9.14 9.91 11 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 E1a_E3a KnownJunction 0 10.00 39.01 43.29 3.96 15.79 9.82 11.92 37.17 11.28 27.96 0.00 0.00 0.00 14.07 25.84 4.36 12.34 11.69 27.29 0.00 26.69 36.01 52.93 13 ER2a ExonRegion 0 3.80 0.34 0.00 0.00 1.64 2.17 3.89 1.52 0.00 0.07 0.00 0.00 0.00 0.00 1.78 1.68 2.03 0.00 1.88 6.46 0.00 1.28 1.73 14 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E3_Aa NovelBoundary 0 0.00 2.57 1.83 0.00 3.74 0.00 0.00 7.56 0.00 1.26 0.00 0.00 0.00 2.12 0.00 0.00 0.00 0.00 0.00 3.26 0.00 0.00 11.27 16 ER3a ExonRegion 0 3.36 42.53 48.08 9.02 29.35 30.10 21.11 53.68 20.38 40.58 0.00 0.00 0.00 16.86 40.28 2.45 6.12 7.99 29.89 8.95 26.44 63.12 63.40 17 E3a_E4a KnownJunction 0 5.41 40.78 42.75 12.82 56.79 45.03 27.51 52.86 20.51 46.71 0.00 0.00 0.00 16.95 39.19 0.00 7.85 9.62 16.38 18.09 33.92 84.56 38.58 18 ER4a ExonRegion 0 36.35 41.12 73.52 27.13 66.99 96.43 42.81 88.15 43.13 56.36 0.00 8.36 2.26 23.41 42.79 2.73 18.48 3.06 21.09 27.73 47.80 94.24 37.47 19 E4a_E5a KnownJunction 0 55.42 43.35 102.98 26.54 92.02 127.09 63.73 86.63 47.77 47.68 0.00 0.00 0.00 51.62 66.01 4.36 22.53 6.30 17.22 14.32 38.43 86.09 37.99 20 ER5a ExonRegion 0 30.32 21.62 84.68 19.82 92.27 97.62 37.54 93.41 60.85 52.29 0.00 5.79 1.31 53.07 58.45 1.70 23.83 13.80 26.37 15.86 58.27 105.34 35.63 21 E5a_E6a KnownJunction 0 0.00 0.00 2.93 0.00 0.00 0.00 0.00 4.60 0.00 2.28 0.00 0.00 0.00 0.00 4.94 0.00 4.30 2.57 0.00 0.00 2.59 0.00 0.00 22 E5a_E7a KnownJunction 0 24.52 28.35 55.35 19.58 131.32 107.10 44.34 103.51 55.64 43.68 0.00 5.85 6.82 65.22 61.81 4.10 21.69 8.83 21.93 22.63 56.46 163.98 27.23 23 E6_Aa NovelBoundary 0 6.37 0.00 1.60 2.06 12.48 0.00 17.67 17.54 3.99 3.33 0.00 0.00 0.00 0.00 15.82 0.00 4.58 0.00 4.24 0.00 2.90 2.27 4.18 24 ER6a ExonRegion 0 6.89 2.88 7.07 2.77 5.90 9.03 5.45 13.20 6.05 2.64 0.00 2.21 0.00 2.35 4.14 0.00 3.23 1.72 5.63 6.53 2.99 0.75 4.25 25 E6a_E7a KnownJunction 0 0.00 5.39 5.91 1.60 0.00 18.06 2.21 1.56 1.19 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 8.75 3.26 5.62 0.00 3.16 26 E7_Aa NovelBoundary 0 17.48 0.00 10.53 5.19 7.13 5.17 1.68 5.50 2.37 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.38 10.93 5.37 0.00 10.59 27 ER7a ExonRegion 0 31.01 53.66 58.99 18.25 108.96 85.78 49.72 88.01 59.58 41.62 0.00 9.20 6.97 36.34 46.22 5.61 25.40 3.72 41.28 31.24 60.08 113.87 48.62 28 E7_Da NovelBoundary 0 42.67 20.79 15.55 3.93 3.65 7.55 10.20 14.25 12.18 6.53 0.00 0.00 0.00 4.59 9.52 0.00 4.02 1.78 0.00 3.00 9.08 25.47 14.60 29 E7a_E8a KnownJunction 0 47.56 45.19 70.78 18.28 83.87 92.39 56.57 96.65 62.35 46.79 0.00 18.01 0.00 36.38 67.87 0.00 22.72 3.44 66.83 9.08 72.65 105.51 46.10 30 E8_Aa NovelBoundary 0 12.97 5.92 12.98 10.16 38.46 15.90 1.85 23.33 10.07 2.69 0.00 0.00 0.00 7.30 8.90 0.00 0.00 0.00 0.00 3.26 7.97 8.57 7.77 31 ER8a ExonRegion 0 37.09 38.33 61.31 23.50 77.31 107.63 54.91 105.75 58.51 39.44 0.00 9.13 3.03 55.82 56.11 5.03 18.28 8.53 43.86 24.58 91.88 122.09 37.45 32 E8_Da KnownBoundary 0 8.22 25.32 23.27 14.58 3.14 34.24 15.24 44.28 17.62 16.25 0.00 0.00 0.00 26.13 13.35 3.16 6.92 6.05 17.41 7.09 34.04 23.33 13.32 33 E8_Db KnownBoundary 0 10.67 3.16 14.40 1.70 0.00 7.33 2.25 9.57 13.22 5.24 0.00 0.00 0.00 0.00 5.56 0.00 4.02 3.73 4.80 0.00 3.15 7.65 7.34 34 E8b_E9a KnownJunction 0 16.97 20.39 58.04 25.77 60.70 140.20 31.93 66.99 56.22 35.81 0.00 0.00 0.00 72.16 30.90 4.36 13.46 5.84 47.15 17.45 56.59 82.73 23.82 35 E8b_E12a KnownJunction 0 0.00 0.00 1.83 0.00 0.00 2.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.33 36 ER8b ExonRegion 0 24.34 31.52 67.09 27.60 58.87 121.49 43.36 109.76 69.48 41.29 0.00 4.33 0.00 73.09 44.24 5.94 24.76 12.01 43.80 14.36 76.03 93.24 43.32 37 ER8c ExonRegion 0 17.26 8.52 9.13 4.32 14.31 9.01 13.17 20.10 13.34 6.88 0.00 3.67 0.00 3.72 5.38 0.00 5.61 2.81 3.47 3.69 9.31 8.95 9.38 38 E8_Dc NovelBoundary 0 22.97 0.00 5.26 8.82 11.46 8.69 17.14 31.79 16.29 1.50 0.00 6.30 0.00 0.00 4.45 0.00 4.77 0.00 0.00 5.31 0.00 0.00 3.33 39 I8 Intron 0 7.14 4.83 4.38 2.34 6.60 6.48 5.69 9.50 5.42 4.84 0.00 0.48 0.21 2.92 2.93 0.81 0.52 2.91 2.74 4.43 9.28 4.24 7.25 40 I8_AR1 ActiveIntronRegion 0 13.17 11.02 4.40 2.04 3.22 6.26 6.91 17.58 6.65 5.15 0.00 0.00 0.00 2.47 3.46 0.00 0.66 1.11 2.56 5.13 3.98 2.93 8.84 41 I8_SR2 SilentIntronRegion 0 9.37 4.68 5.82 2.52 13.27 6.17 7.03 11.40 4.56 8.17 0.00 0.00 0.00 2.25 2.90 0.53 1.75 4.23 2.26 3.39 8.19 3.69 12.49 42 I8_AR3 ActiveIntronRegion 0 5.92 4.87 4.62 3.25 4.63 6.35 6.52 8.57 8.09 7.28 0.00 1.42 1.25 4.16 5.25 1.19 0.44 4.77 0.85 5.95 14.38 8.32 7.82 43 I8_SR3 SilentIntronRegion 0 5.86 3.68 4.00 2.11 6.38 6.63 4.94 7.83 4.60 3.35 0.00 0.41 0.00 2.79 2.17 0.91 0.25 2.44 3.43 4.09 9.07 3.45 5.65 44 E9_Aa NovelBoundary 0 19.56 0.00 5.91 6.39 4.33 24.36 14.93 11.05 12.85 4.49 0.00 0.00 0.00 2.47 4.45 0.00 3.93 5.14 0.00 5.82 5.68 2.94 7.77 45 ER9a ExonRegion 0 64.19 24.86 63.64 22.06 117.55 160.79 68.34 100.54 60.34 38.98 0.00 9.92 5.74 45.57 48.39 5.42 15.35 3.66 42.96 18.86 65.66 106.95 29.28 46 E9a_E10a KnownJunction 0 68.46 42.23 92.75 29.47 116.64 196.19 62.71 120.14 61.69 32.48 0.00 6.00 0.00 29.37 39.68 0.00 8.70 9.41 59.77 22.31 69.07 112.00 42.94 47 ER10a ExonRegion 0 65.36 43.93 64.36 19.07 96.96 199.25 63.18 94.06 58.06 28.27 0.00 4.47 0.00 44.27 46.17 5.21 13.88 5.52 42.30 20.34 35.54 122.61 41.68 48 E10_Da NovelBoundary 0 16.97 9.54 0.00 0.00 0.00 0.00 6.76 5.50 7.81 5.86 0.00 0.00 0.00 0.00 0.00 3.50 0.00 2.45 0.00 3.07 2.78 0.00 3.50 49 E10a_E11a KnownJunction 0 102.17 39.47 54.49 9.22 150.68 164.56 74.37 60.75 53.24 41.66 0.00 0.00 0.00 41.67 41.29 7.18 18.23 3.27 34.35 19.37 45.59 100.42 19.63 50 E10a_E12a NovelJunction 0 0.00 0.00 11.47 1.73 4.16 17.26 10.69 9.94 7.84 7.41 0.00 0.00 0.00 7.06 0.00 0.00 0.00 0.00 0.00 3.00 2.90 11.27 12.12 51 ER11a ExonRegion 0 59.23 30.00 65.09 16.60 99.20 163.15 63.82 71.48 39.67 52.07 0.00 8.02 0.00 47.72 34.35 1.88 9.85 5.76 25.86 22.90 55.84 111.13 28.29 52 E11a_E12a KnownJunction 0 53.27 46.24 56.47 23.54 105.35 218.74 79.76 87.12 31.60 51.52 0.00 12.60 0.00 36.38 49.82 0.00 4.68 4.85 12.42 20.26 33.17 99.81 42.34 53 ER12a ExonRegion 0 46.35 35.03 55.56 13.99 75.02 178.13 45.08 87.82 45.86 52.22 0.00 5.48 0.00 48.60 60.56 7.45 12.54 3.09 30.32 18.45 59.95 81.76 43.31 54 E12a_E13a KnownJunction 0 91.13 47.62 69.10 15.75 102.46 184.50 32.28 84.28 53.93 56.25 0.00 0.00 0.00 52.98 27.32 0.00 22.44 3.36 26.45 21.41 68.82 100.97 57.11 55 E12a_E14a KnownJunction 0 0.00 0.00 0.00 0.00 11.80 28.11 7.91 15.28 9.55 5.99 0.00 0.00 0.00 2.47 6.30 0.00 0.00 0.00 0.00 5.56 2.35 6.25 0.00 56 E13_Aa NovelBoundary 0 17.41 6.38 8.01 3.70 0.00 0.00 8.79 11.54 1.74 1.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.81 2.29 3.12 0.00 57 ER13a ExonRegion 0 92.74 41.11 70.79 13.50 91.56 184.93 60.79 77.26 42.40 54.97 0.00 10.64 0.00 38.45 40.69 0.14 21.04 2.89 32.89 22.84 54.80 95.59 47.45 58 E13_Da NovelBoundary 0 27.78 9.41 1.80 0.00 7.81 4.66 8.26 4.85 5.87 2.53 0.00 0.00 0.00 0.00 12.61 0.00 0.00 0.00 0.00 5.50 2.84 3.12 0.00 59 E13a_E14a KnownJunction 0 153.81 37.89 71.76 8.19 118.68 302.84 102.02 77.63 36.31 46.44 0.00 5.55 0.00 48.33 33.50 0.00 16.08 5.10 44.80 26.97 77.10 91.85 47.80 60 I13 Intron 0 13.16 3.20 4.46 0.96 5.48 7.22 4.69 4.87 2.90 1.21 0.00 0.00 0.00 1.74 2.65 0.23 0.00 0.00 0.50 1.67 3.64 3.44 2.77 61 I13_SR1 SilentIntronRegion 0 11.16 1.70 4.80 1.19 4.69 8.15 3.18 6.09 1.96 1.50 0.00 0.00 0.00 1.17 2.76 0.43 0.00 0.00 0.93 1.91 4.19 3.50 3.00 62 I13_AR1 ActiveIntronRegion 0 15.60 4.99 4.08 0.70 6.43 6.16 6.49 3.46 4.02 0.88 0.00 0.00 0.00 2.43 2.53 0.00 0.00 0.00 0.00 1.41 3.03 3.40 2.52 63 E14_Aa NovelBoundary 0 31.19 2.63 0.00 3.90 6.79 7.72 9.80 9.53 5.09 6.61 0.00 0.00 0.00 4.41 0.00 0.00 0.00 0.00 0.00 2.75 5.81 3.12 3.33 64 ER14a ExonRegion 0 52.83 25.90 56.91 11.06 47.61 111.88 36.12 63.28 33.14 34.65 0.62 6.38 0.00 35.26 45.02 2.63 10.11 5.42 18.09 16.04 62.75 70.80 36.20 65 ER14b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 1.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00