Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TRIM14 Gene 0 113.96 75.09 69.06 43.78 74.83 54.17 53.89 73.23 48.80 57.68 166.69 149.96 210.02 196.46 123.54 189.52 70.86 73.42 34.90 76.21 13.03 15.31 23.74 2 475147 Transcript 0 0.00 1.02 0.00 0.00 1.34 0.00 0.88 0.00 0.00 0.00 0.97 3.75 0.00 4.34 0.00 4.14 0.00 0.00 0.00 0.00 0.00 0.00 1.88 3 375098 Transcript 0 11.50 6.03 3.72 2.38 8.26 6.45 9.23 6.52 2.27 3.06 2.62 5.96 9.01 3.51 6.03 7.34 6.11 2.67 6.48 6.83 6.12 2.96 8.31 4 375084 Transcript 0 0.00 0.00 11.50 6.06 0.00 0.00 0.00 22.59 11.26 8.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.93 0.00 0.00 0.00 0.00 0.00 5 375092 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 311688 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 341469 Transcript 0 56.32 25.49 61.73 30.73 29.10 30.58 24.61 96.92 66.36 77.08 220.55 101.81 136.90 295.25 123.26 214.78 96.73 115.73 40.67 86.88 27.09 22.24 30.76 8 342043 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 478401 Transcript 0 45.49 5.27 33.65 24.07 16.76 6.41 13.24 26.61 18.51 15.53 17.06 47.51 33.75 27.63 30.86 28.40 5.81 34.71 16.49 36.27 0.23 2.69 2.97 10 478530 Transcript 0 0.13 0.00 0.00 0.00 0.00 0.11 0.00 0.16 0.00 0.99 0.00 0.44 0.00 0.08 0.00 0.00 0.00 0.00 0.00 0.01 0.00 0.00 0.00 11 ER1a ExonRegion 0 0.00 2.03 0.00 0.00 2.68 0.00 1.77 0.00 0.00 0.00 1.93 0.00 0.00 1.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 ER1b ExonRegion 0 1.59 3.05 0.00 0.00 2.68 0.92 2.98 0.43 0.00 0.00 6.77 0.00 5.86 4.87 5.80 7.43 0.83 0.00 0.00 1.60 1.10 0.00 0.00 13 ER1c ExonRegion 0 12.17 8.90 0.00 0.00 4.68 11.00 8.44 3.02 0.93 0.00 32.13 4.33 11.14 14.41 29.74 37.52 9.08 1.85 0.00 8.78 2.20 1.56 0.00 14 ER1d ExonRegion 1 20.07 14.66 1.38 0.73 10.44 18.07 15.91 3.60 4.00 9.29 81.12 31.21 120.88 51.68 55.69 107.24 33.75 10.19 6.42 23.10 2.88 8.20 14.02 15 E1_Ae KnownBoundary 1 6.15 3.09 14.90 5.26 15.28 13.69 9.72 16.76 9.11 27.86 19.85 11.55 48.70 21.13 36.96 76.05 3.55 38.01 17.22 41.80 2.66 9.92 15.71 16 ER1e ExonRegion 0 4.14 5.28 13.14 5.60 1.84 14.43 5.30 13.65 9.04 22.79 79.40 28.03 37.28 88.42 46.93 66.45 38.45 22.41 4.51 35.65 5.82 3.72 7.99 17 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 3.83 1.87 0.00 2.43 0.00 0.00 0.00 18 E1a_E3a KnownJunction 1 2.96 15.85 20.22 15.48 8.66 26.29 5.56 35.49 31.63 43.62 106.45 36.91 47.56 228.62 116.08 299.24 51.52 84.61 12.42 65.13 12.60 26.33 21.94 19 E1a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.50 0.00 7.06 0.00 8.29 0.00 0.00 0.00 0.00 0.00 0.00 3.76 20 I1 Intron 0 29.77 7.57 23.35 14.55 15.81 5.89 11.70 14.56 10.83 9.66 13.84 15.58 19.66 20.22 24.14 29.75 8.26 28.91 9.32 33.20 0.81 0.65 5.76 21 I1_AR1 ActiveIntronRegion 0 7.34 0.61 11.87 9.52 5.45 5.50 5.27 8.59 7.58 10.40 8.14 1.01 4.94 13.11 21.90 20.44 8.61 19.58 5.42 21.34 1.71 0.00 1.68 22 I1_SR2 SilentIntronRegion 0 32.97 8.63 25.78 15.86 17.11 6.19 12.92 16.09 11.79 9.99 15.00 18.10 22.28 21.58 24.88 31.06 8.62 31.77 9.85 36.05 0.70 0.71 6.55 23 I1_AR2 ActiveIntronRegion 0 38.63 7.92 6.41 4.97 21.18 4.78 8.58 4.68 2.08 5.88 11.07 6.04 12.51 19.49 28.23 33.75 0.00 0.00 17.59 21.41 0.00 1.91 1.96 24 E2_Aa NovelBoundary 1 74.68 12.17 69.69 45.75 49.49 16.35 31.36 68.59 31.28 15.23 23.27 57.62 40.58 41.32 94.94 57.85 3.55 63.71 24.94 58.04 2.97 0.00 7.34 25 ER2a ExonRegion 1 52.38 12.45 47.94 31.86 23.87 11.62 20.51 41.10 27.93 23.02 22.39 44.23 44.61 41.56 44.48 49.24 4.89 51.74 23.12 52.76 0.68 5.62 8.90 26 E2a_E3a KnownJunction 1 84.09 3.35 53.01 40.35 26.40 7.61 19.21 38.73 27.60 23.56 28.80 98.28 56.65 38.85 48.09 35.97 8.70 50.53 26.35 53.63 0.00 2.45 0.00 27 E3_Aa NovelBoundary 0 12.30 5.53 6.15 33.90 8.49 22.26 12.19 16.47 3.44 4.06 9.27 62.57 6.49 11.89 17.80 8.20 0.00 10.24 0.00 5.56 0.00 0.00 0.00 28 ER3a ExonRegion 0 144.39 48.15 104.55 56.67 75.23 78.24 52.26 100.21 73.24 79.05 246.32 233.97 326.98 262.21 139.02 346.28 73.86 157.41 40.65 132.76 13.87 22.14 44.66 29 E3_Da NovelBoundary 0 12.82 11.45 5.71 9.76 32.17 0.00 2.25 17.25 2.89 3.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.59 30 E3a_E4a KnownJunction 0 134.02 43.08 88.32 49.78 87.86 83.02 56.04 81.74 61.26 84.00 182.15 203.02 201.29 311.85 125.72 186.36 62.74 107.41 34.73 138.44 10.44 12.00 26.63 31 E3a_E5a NovelJunction 0 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 1.53 0.00 0.00 0.00 18.18 2.47 0.00 0.00 0.00 2.24 0.00 0.00 0.00 0.00 0.00 32 ER4a ExonRegion 0 98.32 43.35 90.56 58.11 61.61 62.55 56.16 105.05 76.54 88.20 268.91 264.90 236.69 318.39 114.16 254.25 112.18 114.74 34.82 116.00 18.34 20.14 23.40 33 E4_Ab KnownBoundary 1 97.87 21.38 84.68 59.07 108.49 60.19 48.05 108.81 61.26 75.75 190.42 212.62 224.50 386.37 105.82 285.82 122.21 126.76 50.07 129.24 12.85 8.57 43.45 34 ER4b ExonRegion 0 45.29 20.06 66.33 47.00 45.73 52.37 30.33 74.63 46.60 66.95 217.52 263.33 213.24 295.05 112.38 266.04 87.22 119.32 56.06 95.27 13.61 16.21 31.00 35 E4a_E5a KnownJunction 0 60.53 20.33 63.39 43.68 30.81 38.95 38.60 64.77 44.53 65.38 258.91 272.49 151.78 249.46 90.86 225.58 62.37 126.27 42.26 80.22 24.34 22.47 32.10 36 E4a_E6a NovelJunction 0 0.00 3.03 3.67 1.63 0.00 2.73 0.00 6.28 3.76 11.20 2.68 12.00 6.82 20.43 0.00 11.96 4.77 6.30 0.00 2.75 2.90 0.00 0.00 37 E4a_E7a NovelJunction 0 0.00 2.76 1.15 0.00 0.00 0.00 0.00 2.22 0.00 4.43 0.00 0.00 6.49 2.47 4.45 15.47 4.11 5.64 0.00 9.59 0.00 0.00 0.00 38 ER5a ExonRegion 0 46.72 22.98 73.42 39.77 39.84 38.76 30.64 62.51 67.04 80.26 233.40 216.53 137.82 264.53 92.48 247.02 88.78 112.53 36.23 78.35 24.15 18.53 25.28 39 E5_Da NovelBoundary 0 30.08 8.22 40.27 18.15 3.57 27.65 9.05 22.02 36.83 44.48 99.76 89.28 43.83 123.32 39.06 140.39 45.82 59.73 38.31 39.37 20.82 12.06 7.68 40 E5a_E7e KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 E5b_E6a KnownJunction 0 122.98 21.77 83.23 41.69 43.29 33.45 40.81 42.76 65.51 79.27 281.91 202.57 123.86 265.64 116.57 218.75 92.75 114.37 53.55 70.69 28.97 19.59 18.78 42 ER5b ExonRegion 0 73.44 17.90 76.34 37.21 31.57 35.21 34.42 43.90 60.27 73.63 261.91 202.62 133.67 286.98 87.91 216.67 89.78 106.25 51.60 70.85 30.85 19.17 13.80 43 ER6a ExonRegion 0 78.17 36.34 77.07 28.86 36.83 44.94 40.40 61.61 62.41 81.38 201.67 184.40 146.15 273.97 137.11 240.84 88.70 115.83 35.76 91.21 20.26 19.85 27.31 44 E6a_E7a KnownJunction 0 49.19 40.19 68.89 32.03 19.44 21.01 24.16 65.76 57.61 77.71 197.73 106.68 105.51 266.17 114.47 173.46 80.04 109.35 27.29 75.23 34.41 8.45 23.47 45 E6a_E7c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46 ER7a ExonRegion 0 49.95 36.20 57.35 25.08 13.38 20.91 21.98 57.38 49.40 72.71 185.94 96.98 105.99 238.42 102.70 154.55 74.60 103.84 19.11 63.40 24.24 11.25 21.73 47 ER7b ExonRegion 0 35.17 12.15 36.65 14.29 11.01 17.68 18.50 31.47 33.59 46.32 93.42 70.49 104.32 157.75 81.16 106.50 49.81 59.03 16.54 45.64 13.84 9.08 13.89 48 E7_Ac KnownBoundary 0 38.75 3.03 26.17 9.36 6.96 25.44 13.29 35.41 29.83 28.93 63.96 70.97 129.21 134.21 58.22 72.20 38.34 50.08 12.61 37.33 10.87 8.51 0.00 49 E7_Da KnownBoundary 0 38.67 16.71 27.23 8.19 12.31 51.11 10.73 29.33 32.58 35.16 79.02 32.71 54.38 171.52 62.92 99.72 57.41 59.49 22.49 50.37 3.15 5.88 11.87 50 ER7c ExonRegion 0 33.96 5.39 32.50 8.71 5.70 36.76 10.30 30.96 28.94 37.55 79.84 59.67 94.21 181.90 59.92 72.36 56.12 59.69 20.64 48.94 6.90 8.06 6.89 51 ER7d ExonRegion 0 39.12 11.61 19.25 5.98 5.92 15.41 8.98 13.85 17.04 16.27 73.84 33.83 62.61 134.86 77.38 68.53 31.76 32.69 11.45 33.01 8.84 3.71 7.99 52 E7_Db KnownBoundary 0 50.68 15.00 13.78 2.06 11.46 4.54 9.67 15.03 10.71 9.11 34.38 18.46 13.96 17.19 9.02 30.68 13.00 18.20 8.28 24.61 0.00 0.00 3.67 53 E7b_E7d KnownJunction 0 0.00 0.00 11.50 6.06 0.00 0.00 0.00 22.59 11.26 8.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.93 0.00 0.00 0.00 0.00 0.00 54 E7_Ad KnownBoundary 0 20.30 0.00 13.07 4.59 0.00 13.69 5.79 12.40 23.35 10.96 26.64 0.00 0.00 33.79 13.47 18.46 8.70 20.98 7.91 8.69 5.44 0.00 4.27 55 ER7e ExonRegion 0 44.45 12.61 15.93 4.63 9.63 13.94 12.18 19.01 18.77 15.37 61.85 24.25 33.77 99.40 64.41 42.20 27.07 18.48 9.56 28.94 3.09 1.67 10.57 56 ER7f ExonRegion 0 20.45 19.70 23.58 8.11 7.51 23.72 11.61 30.96 21.77 21.43 78.60 40.60 60.97 144.65 73.66 78.66 34.55 54.04 15.93 33.63 8.70 8.25 6.86 57 E7_Dc KnownBoundary 0 45.56 24.40 50.41 25.07 8.57 61.67 20.67 62.51 46.76 47.98 146.51 96.63 111.03 226.56 130.42 211.31 43.67 103.05 30.31 73.38 5.31 11.94 12.29 58 ER7g ExonRegion 0 32.56 13.26 43.51 18.04 16.37 38.06 14.69 61.89 32.35 54.72 123.25 52.56 109.19 204.52 116.63 148.83 47.41 54.56 15.10 66.23 9.42 8.27 13.25 59 E7_Dd KnownBoundary 0 98.17 23.61 72.62 38.62 27.59 20.90 14.44 116.53 62.21 75.24 131.77 84.18 163.14 303.55 198.03 259.08 44.69 117.15 49.41 129.88 7.85 19.96 50.19 60 E7d_E7f KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61 E7d_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 62 E7d_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 63 ER7h ExonRegion 0 56.32 25.49 61.73 30.73 29.10 30.58 24.61 96.92 66.36 77.08 220.55 101.81 136.90 295.25 123.26 214.78 96.73 115.73 40.67 86.88 27.09 22.24 30.76 64 E7_Ae KnownBoundary 0 69.20 35.39 64.34 22.27 56.62 49.29 41.20 73.15 60.91 74.35 261.22 125.89 254.69 317.91 115.46 228.66 111.64 106.91 50.26 100.09 17.17 13.59 15.54 65 ER7i ExonRegion 0 176.02 125.43 99.87 65.79 117.82 80.15 82.12 105.33 67.18 78.86 231.77 213.00 321.09 261.80 178.06 266.33 98.53 95.20 50.00 102.72 15.79 21.07 32.14 66 E7_Af KnownBoundary 0 249.08 123.73 84.44 72.65 47.20 83.02 72.91 123.63 59.95 69.25 108.92 164.60 129.86 166.52 274.93 135.01 26.09 59.90 57.79 122.08 11.18 28.23 35.77 67 ER7j ExonRegion 1 203.02 95.07 52.44 50.10 182.35 61.70 97.67 68.28 46.93 44.84 70.25 150.03 146.32 82.28 108.73 78.60 30.33 40.41 22.83 62.65 1.66 12.40 15.61 68 E7_De NovelBoundary 0 203.22 95.18 41.36 39.62 203.48 100.96 125.55 77.01 28.15 42.87 44.38 82.83 116.55 33.02 78.25 74.25 17.30 34.53 19.20 61.49 2.66 15.31 4.27 69 E7_Df NovelBoundary 1 66.53 43.28 22.47 17.35 45.42 22.26 51.54 51.22 29.40 35.48 18.32 67.22 26.62 40.73 15.20 63.74 8.79 31.13 13.46 21.80 0.00 3.12 3.33 70 ER7k ExonRegion 1 95.03 18.10 6.49 13.77 75.72 19.44 32.44 8.30 8.40 9.18 21.84 22.95 28.61 11.37 30.46 13.37 8.25 7.58 4.78 9.79 0.00 5.00 0.00 71 I7 Intron 0 39.72 33.14 31.63 21.01 29.12 36.28 27.32 31.29 16.94 26.73 27.55 33.16 30.46 31.51 24.19 35.21 17.67 35.97 17.05 37.87 3.71 5.01 10.95 72 I7_AR1 ActiveIntronRegion 0 39.81 33.22 31.70 21.06 29.19 36.37 27.38 31.37 16.97 26.79 27.62 33.24 30.54 31.58 24.24 35.30 17.71 36.05 17.09 37.96 3.72 5.02 10.97 73 Ix Intron 0 57.72 31.59 29.93 18.63 37.63 35.66 31.58 34.34 17.56 23.83 22.45 26.79 22.20 28.92 29.76 25.08 12.11 18.43 9.35 22.38 2.70 4.59 9.70 74 Ix_AR1 ActiveIntronRegion 0 58.00 31.72 30.07 18.72 37.80 35.82 31.72 34.50 17.64 23.93 22.56 26.92 22.31 29.05 29.91 25.20 12.17 18.51 9.39 22.49 2.71 4.61 9.74 75 E8_Aa NovelBoundary 0 15.63 9.41 7.42 7.03 20.97 20.73 21.95 21.07 6.66 12.14 0.00 0.00 0.00 7.18 4.45 6.92 13.65 11.81 16.75 5.69 3.09 2.57 3.59 76 ER8a ExonRegion 0 0.26 0.00 0.00 0.00 0.00 0.22 0.00 0.31 0.00 0.31 0.01 0.88 0.00 0.16 0.00 0.01 0.01 0.00 0.00 0.01 0.00 0.00 0.00 77 E8_Da NovelBoundary 0 206.78 124.19 256.29 59.13 92.02 54.06 68.19 117.23 73.49 119.62 172.83 229.42 213.14 300.78 316.34 227.03 179.24 61.23 116.24 74.46 124.98 200.60 92.02 78 Ix Intron 0 22.74 8.43 10.59 9.17 23.68 18.25 10.31 11.82 5.81 6.89 3.12 8.71 22.72 3.87 7.31 6.66 6.06 2.91 2.57 4.37 1.61 4.50 5.50 79 Ix_SR1 SilentIntronRegion 0 23.80 8.99 11.97 9.88 24.52 18.94 10.39 13.16 6.24 7.48 3.14 8.95 25.68 4.12 7.71 6.92 6.21 3.40 2.49 4.65 1.68 5.43 5.98 80 Ix_AR1 ActiveIntronRegion 0 29.85 5.85 7.54 10.14 27.94 22.30 13.15 10.56 5.40 5.64 3.74 8.82 10.72 3.81 6.53 5.94 5.51 0.69 5.57 4.55 1.64 0.00 2.66 81 Ix_SR1 SilentIntronRegion 0 7.74 11.18 2.49 5.60 36.91 17.69 10.91 4.69 3.38 1.53 0.00 8.54 1.77 3.51 6.30 4.10 1.52 0.85 1.46 2.88 2.03 0.96 5.40 82 Ix_AR1 ActiveIntronRegion 0 10.70 8.41 1.68 0.93 15.98 26.12 8.52 8.28 3.38 2.36 1.78 3.28 8.87 1.14 10.04 10.92 6.07 1.27 0.00 1.96 1.01 0.00 1.35 83 E9_Aa NovelBoundary 0 21.41 9.27 14.19 10.09 37.52 2.90 6.40 16.92 8.13 15.42 4.84 0.00 6.66 7.42 17.80 12.30 4.77 4.35 12.05 9.46 3.15 9.00 4.35 84 ER9a ExonRegion 0 23.00 12.05 7.44 4.77 16.52 12.90 18.46 13.04 4.55 6.12 5.25 11.92 18.02 7.02 12.06 14.68 12.23 5.33 12.97 13.66 12.24 5.91 16.61