Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP11-262H14.10 Gene 0 16.29 39.64 29.18 18.66 13.04 14.44 15.33 19.95 19.48 35.10 38.12 58.69 44.47 62.64 40.24 39.55 25.56 33.99 23.75 42.10 5.40 4.04 4.05 2 427509 Transcript 0 1.27 1.63 0.00 0.00 2.14 3.67 0.00 0.00 0.00 1.15 2.32 0.87 0.00 7.47 4.06 0.00 0.66 0.00 4.46 10.64 0.00 0.00 4.70 3 424345 Transcript 0 9.19 27.18 18.70 11.65 6.53 8.09 7.77 13.66 13.09 23.94 20.33 28.74 18.44 30.95 23.71 22.08 11.34 22.56 9.41 18.72 2.64 1.33 1.65 4 452184 Transcript 0 18.97 13.21 19.87 12.27 12.66 4.22 3.52 5.04 3.06 5.68 18.85 56.26 21.34 46.09 36.86 30.44 24.73 8.60 24.01 33.46 1.34 4.24 9.70 5 IG29 Intergenic 0 14.51 22.66 35.23 10.44 4.59 5.50 7.94 5.52 10.25 15.38 38.93 24.92 30.86 122.75 100.86 22.93 46.66 37.81 35.49 96.69 9.44 0.89 0.00 6 IG29_SR1 SilentIntergenicRegion 0 15.70 24.50 38.11 11.29 4.96 5.95 8.59 5.97 11.09 16.64 42.10 26.96 33.38 132.62 109.06 24.80 50.47 40.90 38.37 104.58 10.22 0.97 0.00 7 ER1a ExonRegion 0 1.27 1.63 0.00 0.00 2.14 3.67 0.00 0.00 0.00 1.15 2.32 0.87 0.00 7.47 4.06 0.00 0.66 0.00 4.46 10.64 0.00 0.00 4.70 8 ER1b ExonRegion 0 50.03 24.50 0.97 0.08 6.69 31.09 8.10 0.00 0.17 1.15 49.29 49.07 30.41 135.76 88.66 66.47 54.21 17.13 158.45 189.49 11.92 20.93 13.26 9 E1_Da NovelBoundary 0 37.93 64.73 109.10 69.65 46.35 19.19 69.56 90.94 80.82 167.00 43.59 64.82 79.05 110.84 65.89 72.80 49.74 330.22 227.77 278.36 31.14 18.25 14.08 10 E1a_E3a KnownJunction 1 31.78 3.09 1.83 0.00 3.99 0.00 0.00 0.00 0.00 0.00 22.43 0.00 0.00 35.38 24.72 43.15 0.00 2.28 4.61 2.94 0.00 0.00 0.00 11 I1 Intron 0 33.34 69.39 89.53 40.56 25.84 40.23 33.15 60.37 48.49 128.34 48.57 96.32 62.50 129.99 92.49 69.10 64.67 259.43 290.24 399.72 23.14 22.65 32.21 12 I1_AR1 ActiveIntronRegion 0 33.46 69.64 89.86 40.71 25.93 40.37 33.27 60.59 48.66 128.81 48.74 96.68 62.73 130.44 92.81 69.35 64.90 260.38 291.27 401.16 23.22 22.74 32.32 13 E2_Aa NovelBoundary 0 61.12 64.86 63.66 30.77 19.10 65.30 43.10 36.88 32.84 72.12 39.17 40.81 39.77 176.23 67.12 49.82 40.02 205.82 125.09 231.32 13.22 15.00 22.62 14 ER2a ExonRegion 0 16.17 21.63 27.85 7.94 7.13 11.15 6.55 9.76 7.68 25.98 11.45 28.43 11.27 66.63 49.93 26.02 26.14 32.14 55.91 125.39 6.69 6.39 12.69 15 E2_Da NovelBoundary 0 31.34 15.33 97.01 22.31 8.57 19.48 12.72 25.01 39.73 71.53 44.06 48.77 38.47 77.23 65.76 25.12 36.28 82.08 92.61 228.06 10.07 12.92 16.82 16 E2a_E3a KnownJunction 0 10.00 0.00 0.00 1.73 0.00 0.00 0.00 0.00 0.00 0.00 4.58 6.30 6.82 15.19 5.19 4.10 18.61 1.62 0.00 0.00 0.00 0.00 4.18 17 I2 Intron 0 8.07 14.54 22.63 4.84 1.28 10.49 6.31 13.50 7.02 22.82 15.66 34.72 22.09 81.87 42.35 24.08 31.50 34.19 54.66 145.02 10.50 6.95 12.60 18 I2_AR1 ActiveIntronRegion 0 8.15 14.68 22.81 4.89 1.29 10.59 6.37 13.63 7.08 23.04 15.81 35.04 22.26 82.60 42.75 24.31 31.76 34.51 55.17 146.25 10.60 7.02 12.69 19 I2 Intron 1 10.25 23.26 17.69 5.20 5.40 7.65 3.56 7.97 7.18 17.25 19.51 7.20 4.71 44.27 18.95 15.20 15.10 29.42 35.58 58.69 5.63 2.24 4.35 20 I2_AR1 ActiveIntronRegion 1 10.44 17.08 19.84 3.32 6.16 11.05 3.58 7.20 7.96 21.62 21.80 9.04 6.17 45.30 20.14 14.73 17.17 34.92 46.69 75.88 7.62 2.68 3.88 21 I2_SR1 SilentIntronRegion 1 9.96 35.95 13.48 9.03 3.92 0.82 3.55 9.60 5.66 8.53 15.03 3.53 1.80 42.51 16.66 16.19 11.04 18.52 13.38 24.36 1.66 1.38 5.31 22 E3_Aa NovelBoundary 0 39.49 81.43 34.71 50.78 27.59 0.00 28.22 22.22 29.20 22.24 38.33 125.59 85.22 42.03 15.08 24.44 13.18 1.82 16.75 59.70 0.00 5.39 8.19 23 ER3a ExonRegion 0 65.30 58.90 50.60 26.01 31.02 21.19 20.49 20.07 15.51 16.17 101.82 207.26 119.52 126.54 76.87 59.12 65.72 15.83 39.36 44.48 1.04 15.20 10.14 24 E3_Da NovelBoundary 1 6.89 97.42 26.67 48.61 12.99 0.00 22.39 34.42 27.81 23.72 50.07 176.76 112.17 87.12 13.35 38.62 11.87 14.38 3.86 82.07 0.00 0.00 0.00 25 E3a_E4a KnownJunction 0 54.97 8.81 36.57 7.72 34.72 4.77 2.16 7.06 2.95 0.00 55.65 167.30 65.42 99.89 89.38 108.86 60.12 2.11 49.51 2.88 0.00 8.27 22.62 26 E3a_E5a KnownJunction 0 2.82 0.00 0.00 0.00 0.00 2.67 0.00 2.55 0.00 0.00 15.48 0.00 6.49 14.13 6.30 10.94 3.93 0.00 0.00 0.00 3.15 3.12 0.00 27 ER4a ExonRegion 1 6.25 1.76 2.62 1.55 11.92 0.00 1.38 2.04 0.11 0.00 19.15 62.19 20.47 40.60 37.58 12.16 14.10 0.00 10.14 0.68 0.00 5.02 6.94 28 I4 Intron 1 7.62 45.20 21.56 19.94 15.67 11.84 22.12 14.41 19.35 28.06 43.16 105.89 84.86 83.92 17.86 35.18 27.02 26.63 22.70 50.16 5.29 9.17 7.69 29 I4_SR1 SilentIntronRegion 1 6.59 45.46 21.36 20.59 15.04 10.97 21.17 14.50 19.93 26.91 41.84 103.22 89.10 87.67 17.37 33.76 26.26 28.33 23.31 50.64 4.94 8.60 6.77 30 I4_AR1 ActiveIntronRegion 1 11.25 49.58 22.95 18.96 18.85 14.64 25.09 13.38 19.71 32.35 47.76 120.56 78.71 71.74 18.38 34.75 29.37 20.40 20.08 49.59 6.51 12.13 11.11 31 I4_SR2 SilentIntronRegion 1 5.12 11.32 16.57 13.05 7.99 11.39 22.25 19.24 5.28 23.68 39.98 64.89 38.32 86.70 24.47 66.95 27.32 32.46 27.33 43.95 4.41 1.43 4.25 32 E5_Aa NovelBoundary 1 7.41 86.04 42.34 50.08 70.80 36.74 76.45 34.63 35.10 57.78 64.65 106.68 119.80 121.02 14.59 51.52 39.46 33.33 35.86 116.46 5.50 30.25 23.39 33 ER5a ExonRegion 0 10.59 26.26 18.76 13.55 14.41 10.52 21.71 20.10 22.03 33.58 42.30 53.94 65.67 46.61 16.73 36.24 22.34 14.36 17.45 33.58 4.22 4.16 2.75 34 E5_Da KnownBoundary 1 21.93 35.19 51.71 29.03 50.93 5.51 25.57 16.72 24.51 65.09 9.37 23.56 53.24 2.65 0.00 18.88 8.32 15.46 7.81 27.93 0.00 0.00 4.01 35 ER5b ExonRegion 0 9.15 25.03 17.08 12.88 10.87 15.75 14.89 20.39 22.80 36.88 36.71 61.50 50.78 71.90 30.16 47.44 29.79 44.86 18.64 33.93 6.96 3.41 3.67 36 E5b_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 ER6a ExonRegion 0 14.27 28.07 15.25 12.87 5.08 9.61 6.44 21.99 23.32 32.48 26.43 40.67 16.50 33.19 15.14 30.89 12.36 30.40 4.74 19.79 0.95 1.55 2.19 38 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 ER7a ExonRegion 0 22.53 82.78 61.19 32.50 16.70 15.08 17.51 25.93 19.32 50.33 38.49 41.53 24.92 49.64 73.25 32.09 14.54 37.54 23.64 39.86 5.30 1.68 2.37 40 E7_Da NovelBoundary 0 11.34 40.65 30.10 33.13 8.23 0.00 10.60 2.38 6.28 6.90 0.00 0.00 8.28 0.00 0.00 4.36 7.76 0.00 4.05 13.74 0.00 0.00 0.00 41 I7 Intron 0 3.47 22.80 24.60 16.11 8.77 7.62 7.67 4.87 3.94 4.73 0.24 1.80 2.06 0.67 0.77 0.75 1.66 3.25 6.02 13.40 0.00 0.52 0.75 42 I7_SR1 SilentIntronRegion 0 3.48 22.86 24.66 16.15 8.79 7.64 7.69 4.88 3.95 4.75 0.24 1.80 2.07 0.68 0.78 0.75 1.67 3.26 6.04 13.43 0.00 0.53 0.75 43 E8_Aa NovelBoundary 0 17.34 52.29 47.57 43.95 0.00 2.16 5.74 14.33 12.24 3.98 7.05 18.01 15.10 7.95 10.75 0.00 8.60 2.53 17.69 61.42 0.00 0.00 0.00 44 ER8a ExonRegion 0 7.47 33.85 32.30 42.42 9.55 5.20 7.50 6.35 4.56 2.42 3.44 17.08 2.74 8.15 2.24 1.05 4.68 7.15 4.51 38.37 0.00 1.50 2.08