Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PGM5P1 Gene 0 7.07 7.61 2.74 3.21 7.35 1.95 5.73 4.27 3.39 2.17 2.75 5.37 5.48 11.55 8.86 7.31 25.41 8.55 5.71 7.34 3.66 3.40 3.42 2 377476 Transcript 0 3.05 1.89 0.75 0.89 2.00 0.54 1.39 1.64 1.09 0.58 0.68 1.24 1.46 6.88 6.41 3.87 16.44 2.95 1.36 2.23 1.03 1.39 0.86 3 ER1a ExonRegion 0 1.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.77 3.14 0.35 9.43 4.38 0.00 0.00 1.83 0.00 0.00 4 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 E2_Aa NovelBoundary 0 36.90 31.64 4.73 8.06 11.21 2.56 1.68 1.68 5.01 2.47 0.00 0.00 0.00 9.95 23.24 19.40 16.08 0.00 0.00 11.12 2.59 7.72 4.35 6 ER2a ExonRegion 0 0.74 0.64 0.00 2.54 1.67 0.00 0.00 1.60 0.57 0.00 0.00 0.00 0.00 2.48 3.42 1.60 13.61 0.48 0.00 1.33 1.30 0.00 0.92 7 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 ER3a ExonRegion 0 2.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.77 0.00 0.00 0.00 0.00 6.64 10.36 3.44 33.91 1.07 0.00 0.00 0.00 2.24 0.08 9 E3_Da NovelBoundary 0 0.00 5.99 1.77 3.93 0.00 0.00 4.11 13.72 4.86 0.00 0.00 0.00 0.00 5.06 0.00 0.00 13.28 1.66 0.00 14.38 0.00 0.00 0.00 10 E3a_E4a KnownJunction 0 7.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.30 12.11 12.13 43.76 0.00 0.00 0.00 0.00 0.00 0.00 11 E4_Aa NovelBoundary 0 3.56 5.92 10.64 9.36 4.16 0.00 3.36 4.64 4.25 2.95 0.00 0.00 12.66 4.59 0.00 6.84 0.00 9.66 0.00 31.38 5.75 3.12 3.24 12 ER4a ExonRegion 0 6.10 2.40 2.96 0.00 1.08 2.23 0.54 2.67 0.91 0.69 0.00 0.00 0.00 12.22 11.81 9.01 50.38 1.86 1.29 8.61 0.89 4.91 1.10 13 E4_Da NovelBoundary 0 2.89 5.66 4.44 9.02 0.00 2.78 0.00 3.53 5.06 1.67 0.00 0.00 0.00 9.01 0.00 4.19 8.88 9.41 0.00 18.09 2.66 0.00 0.00 14 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.55 1.79 0.00 0.00 0.00 0.00 7.83 13.85 7.09 33.29 0.00 0.00 0.00 0.00 3.12 0.00 15 ER5a ExonRegion 0 0.57 0.04 0.00 0.00 0.00 0.00 0.35 0.99 0.28 0.00 0.00 0.00 1.03 6.52 6.41 2.60 11.44 1.67 0.00 0.00 0.00 1.68 0.00 16 E5_Da NovelBoundary 0 0.00 2.89 9.31 3.93 4.33 0.00 0.00 4.48 5.06 4.46 5.16 18.61 6.82 4.94 0.00 21.11 17.30 7.05 0.00 24.22 3.15 3.06 8.71 17 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER6a ExonRegion 0 0.87 0.05 0.00 0.05 0.16 0.00 0.07 2.06 0.03 0.07 0.66 0.00 1.27 7.75 4.94 0.88 14.01 5.11 0.00 0.84 1.41 0.03 0.00 19 E6a_E7a KnownJunction 0 7.33 0.00 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 0.00 17.36 17.80 4.02 7.67 6.22 0.00 0.00 0.00 0.00 0.00 20 I6_AR1 ActiveIntronRegion 0 7.03 14.11 6.34 14.40 12.92 3.60 12.39 9.72 6.67 9.28 3.79 20.67 20.15 13.67 4.22 3.14 23.91 5.27 2.88 13.16 2.66 8.80 4.43 21 I6_SR2 SilentIntronRegion 0 5.07 13.99 14.72 10.87 26.29 8.75 20.55 18.02 19.84 11.05 11.63 13.48 34.68 40.37 8.70 25.79 74.10 10.64 15.47 61.36 14.23 17.87 5.38 22 I6_AR2 ActiveIntronRegion 0 1.01 3.40 5.67 2.77 4.79 1.86 2.87 9.18 7.26 7.75 2.60 4.39 6.58 9.28 1.95 6.25 25.91 4.14 5.04 17.59 5.03 2.89 2.37 23 I6_SR3 SilentIntronRegion 0 4.65 10.92 4.90 4.96 13.76 12.08 12.88 8.17 2.74 4.18 3.38 6.90 21.95 20.59 8.29 17.14 42.23 5.83 6.13 10.99 5.92 11.19 2.15 24 ER7a ExonRegion 0 1.33 0.67 0.00 1.40 3.67 0.00 1.35 1.45 1.37 1.15 0.67 0.00 2.77 9.55 6.46 2.43 8.41 2.71 0.00 2.13 0.84 0.00 0.00 25 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 ER8a ExonRegion 0 1.48 0.47 0.14 0.14 1.46 0.02 0.19 0.60 1.21 0.17 0.06 0.67 0.47 0.88 0.13 0.20 2.09 1.95 0.42 0.50 0.10 1.44 0.03 27 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 I8_SR2 SilentIntronRegion 0 8.97 4.52 3.40 3.14 26.84 12.49 18.87 14.93 12.16 11.67 5.43 5.70 5.21 24.80 8.61 10.57 49.78 11.73 13.45 30.46 3.11 1.36 4.20 29 I8_AR2 ActiveIntronRegion 0 7.81 0.00 2.45 1.36 10.91 5.50 8.40 11.43 9.69 5.87 0.82 0.00 18.58 6.12 1.56 1.49 21.84 13.15 3.68 16.94 0.00 0.00 0.45 30 I8_AR3 ActiveIntronRegion 0 9.64 4.75 3.33 4.00 8.41 7.15 14.54 13.34 13.03 12.92 2.11 3.52 10.53 20.43 6.75 11.42 42.80 10.25 7.06 22.30 4.50 5.34 4.90 31 I8_SR3 SilentIntronRegion 0 7.46 5.35 2.45 2.73 5.35 0.00 9.96 4.55 8.65 1.99 1.93 0.00 0.00 17.69 1.07 7.20 21.89 5.15 0.00 10.86 1.86 1.97 1.55 32 I8_SR4 SilentIntronRegion 0 1.12 0.97 0.39 0.52 1.84 1.55 2.07 1.50 2.77 3.74 0.92 2.30 4.18 8.38 1.99 3.45 14.80 8.81 3.19 7.89 2.32 2.42 4.03 33 I8_AR5 ActiveIntronRegion 0 0.00 0.00 4.90 2.73 0.00 7.34 2.65 0.00 1.78 1.15 0.00 0.00 4.69 6.14 0.00 0.00 18.71 9.65 0.35 10.64 0.00 0.00 0.00 34 I8_AR6 ActiveIntronRegion 0 1.56 3.00 2.15 2.56 0.49 0.41 2.43 1.42 4.49 3.29 0.00 1.88 3.34 1.85 0.00 1.09 19.44 7.98 0.59 5.37 0.00 1.53 1.08 35 I8_AR8 ActiveIntronRegion 0 0.00 1.00 1.86 0.00 0.00 0.00 0.28 4.27 2.03 2.21 0.18 8.05 0.00 6.55 0.00 4.37 14.95 3.61 0.30 10.79 1.32 0.59 4.80 36 I8_AR9 ActiveIntronRegion 0 0.00 0.00 0.24 0.00 0.00 0.00 0.00 1.22 4.07 1.21 2.58 1.44 0.00 3.60 0.00 0.00 22.20 2.28 0.00 3.63 0.00 0.00 0.00 37 I8_AR10 ActiveIntronRegion 0 3.49 0.98 4.11 0.00 1.98 2.17 2.50 5.44 12.69 7.28 2.04 5.29 1.65 12.48 2.90 6.05 35.88 12.11 4.72 14.18 2.33 5.17 7.99 38 I8_AR11 ActiveIntronRegion 0 1.72 0.96 0.86 0.40 3.21 2.00 1.27 1.25 1.56 2.06 1.99 4.54 3.56 6.11 1.21 2.75 15.13 2.56 0.85 6.04 0.36 2.53 2.29 39 E9_Aa NovelBoundary 0 139.73 191.74 152.33 212.33 154.41 39.75 124.49 126.59 180.50 106.08 47.96 69.62 43.67 5.59 0.00 41.78 111.92 138.87 78.31 76.57 72.46 16.59 49.34 40 ER9a ExonRegion 0 22.53 27.92 9.72 11.01 25.93 6.89 21.17 13.64 11.59 7.74 10.11 20.38 19.31 27.68 18.54 21.98 51.53 24.74 21.40 24.55 11.10 10.25 12.47