Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TJP2 Gene 0 30.85 24.38 16.79 13.01 20.09 12.29 21.11 19.32 15.48 9.81 140.42 84.98 88.92 150.69 43.64 120.53 157.23 20.24 7.80 21.09 24.88 33.21 16.08 2 377259 Transcript 0 0.00 0.53 1.57 1.32 1.73 0.27 0.72 0.45 0.00 0.00 0.34 0.43 1.16 0.27 1.21 2.39 2.86 0.66 0.32 1.48 0.38 0.53 2.12 3 423935 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 377245 Transcript 0 52.17 19.58 23.80 14.56 30.57 19.30 27.52 26.94 19.02 12.04 167.13 93.47 153.23 180.21 72.12 173.60 191.28 29.76 9.88 25.00 32.67 35.77 21.28 5 453658 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 348208 Transcript 0 3.78 8.75 1.42 1.86 3.23 7.84 0.00 0.00 1.48 1.26 9.27 6.30 0.00 12.66 0.00 7.26 4.68 0.00 0.00 6.14 2.47 2.94 0.00 7 265384 Transcript 0 9.92 6.37 7.02 7.84 5.34 3.91 6.64 5.67 4.62 1.71 27.20 13.04 16.45 21.66 4.78 18.56 26.17 7.34 3.61 8.92 2.60 7.77 4.17 8 498204 Transcript 0 3.88 2.79 0.90 0.74 2.88 1.68 4.44 0.10 0.88 0.84 5.95 9.94 15.52 8.72 10.76 8.14 12.31 0.79 0.38 1.44 1.64 1.86 1.50 9 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 1.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.59 0.00 0.37 0.64 0.00 0.00 0.00 1.17 10 ER1b ExonRegion 0 1.78 3.13 0.00 3.40 4.47 3.86 2.79 5.77 5.06 2.31 2.36 3.51 1.63 10.87 4.84 10.00 8.27 6.70 6.24 7.98 5.26 3.51 3.88 11 E1a_E3a KnownJunction 0 0.00 3.03 0.00 0.00 0.00 8.18 0.00 8.58 13.34 1.26 0.00 0.00 0.00 7.53 0.00 0.00 0.00 18.70 8.94 9.01 4.88 0.00 3.41 12 ER2a ExonRegion 0 0.00 2.59 0.00 0.00 0.00 1.03 0.00 0.00 0.12 0.50 1.79 0.00 0.00 0.61 1.23 0.00 1.07 0.00 0.00 0.40 0.17 0.16 0.00 13 E2_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 2.38 0.00 0.00 0.00 0.00 6.84 0.00 0.00 2.18 0.00 0.00 17.20 2.20 0.00 2.88 0.00 0.00 0.00 14 ER2b ExonRegion 0 0.00 0.00 0.00 0.25 0.00 0.33 0.00 1.41 1.24 2.47 4.86 0.00 0.00 8.91 3.87 8.92 13.50 0.00 0.00 4.58 4.47 2.34 0.62 15 E2_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 1.79 3.06 0.00 0.00 0.00 4.59 0.00 3.93 3.93 0.00 0.00 3.20 2.72 2.69 0.00 16 E2_Ad KnownBoundary 0 0.00 0.00 0.00 1.76 0.00 0.00 0.00 6.70 0.00 1.40 33.43 0.00 0.00 15.01 0.00 64.26 50.77 1.58 0.00 3.26 20.76 3.12 8.54 17 ER2c ExonRegion 0 0.25 0.00 0.00 1.36 0.00 0.11 0.16 5.39 1.24 3.44 24.56 0.00 0.00 16.43 1.54 46.68 35.34 1.63 0.00 4.63 14.78 4.04 6.39 18 ER2d ExonRegion 1 5.44 0.00 2.70 0.56 0.99 2.02 1.22 5.36 1.13 0.95 91.78 6.34 11.45 39.87 12.05 105.55 89.96 8.90 0.00 6.80 17.79 17.86 8.15 19 E2a_E3a KnownJunction 1 0.00 0.00 0.00 0.00 0.00 0.00 2.25 2.42 1.79 4.84 124.93 6.30 0.00 60.10 15.82 58.70 113.88 4.68 0.00 15.85 29.41 13.29 3.24 20 ER3a ExonRegion 1 0.12 3.54 3.61 3.10 2.63 5.20 8.26 13.64 14.78 6.54 165.80 14.35 14.85 109.84 16.33 117.45 172.56 31.72 6.13 28.96 19.63 19.21 14.09 21 E3a_E4a KnownJunction 1 0.00 3.35 8.72 5.49 8.06 0.00 11.53 20.17 14.38 9.40 143.14 30.61 13.64 125.08 25.22 193.37 211.59 36.52 4.61 39.18 8.46 21.00 19.55 22 ER4a ExonRegion 1 3.61 4.12 6.77 5.06 9.38 9.52 9.47 15.85 17.63 10.00 140.03 37.34 32.15 156.41 31.33 197.14 135.15 27.18 9.51 20.77 21.98 35.77 22.72 23 E4a_E5a KnownJunction 1 3.19 16.71 6.24 8.39 12.31 24.93 22.26 12.32 15.60 10.15 168.83 31.81 32.79 196.07 27.44 100.57 185.32 24.87 9.60 27.68 11.92 22.41 11.18 24 ER5a ExonRegion 1 7.97 8.51 9.42 6.85 1.82 7.64 8.21 17.35 16.98 8.51 158.55 35.48 28.69 189.85 19.46 116.61 172.86 27.79 6.59 25.82 36.86 24.68 20.01 25 E5_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 1.81 0.00 0.00 0.00 2.68 0.00 13.15 0.00 4.45 0.00 4.49 0.00 0.00 0.00 6.24 0.00 0.00 26 E5a_E6a KnownJunction 1 3.11 2.57 4.49 3.46 0.00 13.80 0.00 13.43 17.82 7.09 128.45 78.48 20.78 197.07 22.25 125.69 165.50 37.31 12.80 18.60 32.31 21.06 12.21 27 ER5b ExonRegion 0 0.00 1.54 0.15 0.83 1.78 0.39 3.25 0.00 0.00 0.00 1.29 2.89 10.37 1.77 2.81 4.32 1.70 0.00 0.00 0.00 3.87 1.70 0.00 28 E5_Db KnownBoundary 0 0.00 3.35 0.00 1.63 4.33 2.16 3.97 0.00 0.00 0.00 0.00 7.65 8.28 2.18 0.00 8.72 0.00 0.00 0.00 0.00 0.00 3.12 0.00 29 ER5c ExonRegion 0 0.00 1.07 3.13 2.63 2.38 0.55 1.43 0.89 0.00 0.00 0.67 0.85 2.33 0.53 2.43 4.19 5.73 0.96 0.00 2.95 0.76 1.06 3.06 30 ER6a ExonRegion 1 4.19 2.53 8.83 2.68 1.53 6.27 5.89 8.69 10.17 6.83 99.19 24.57 24.99 160.90 22.28 77.23 119.78 26.41 6.04 10.89 28.01 15.95 10.45 31 E6_Da KnownBoundary 1 3.19 0.00 4.46 0.00 4.16 11.24 1.90 4.15 7.67 2.31 66.60 6.30 13.31 146.98 15.20 70.49 74.71 25.29 0.00 2.94 19.65 9.00 0.00 32 ER6b ExonRegion 1 3.59 3.69 5.07 1.66 3.04 6.71 6.85 5.43 6.81 4.73 81.38 14.89 23.25 127.21 18.14 78.79 113.53 23.30 4.63 11.96 21.41 12.51 10.46 33 E6b_E7a KnownJunction 0 9.93 17.63 11.97 8.26 14.26 2.50 25.88 18.36 9.69 8.60 102.97 43.36 39.61 193.18 51.30 244.72 185.88 32.46 24.85 20.01 18.35 42.25 12.04 34 ER7a ExonRegion 0 18.36 14.41 9.97 7.01 11.81 6.51 27.64 16.74 14.56 6.68 153.78 56.03 115.90 209.56 31.75 165.81 215.86 30.01 12.99 29.97 32.59 26.81 17.06 35 E7a_E8a KnownJunction 1 26.45 17.69 11.18 4.26 7.81 18.34 34.98 9.90 16.58 9.72 242.22 90.93 249.98 225.32 33.01 177.13 261.99 20.69 4.24 34.71 35.71 26.15 15.54 36 ER8a ExonRegion 0 10.34 13.15 14.59 13.68 22.81 18.31 22.93 20.80 25.06 13.95 235.95 154.51 207.61 249.38 50.49 174.87 273.89 20.05 10.09 33.63 25.06 40.66 24.92 37 E8a_E9a KnownJunction 0 6.67 6.64 11.92 13.82 46.77 27.14 43.59 22.22 29.75 12.79 248.43 221.02 232.94 336.40 74.79 162.18 309.96 27.23 4.33 29.21 16.74 58.85 27.83 38 ER9a ExonRegion 0 13.11 13.96 25.15 14.72 29.04 18.39 30.55 25.36 30.48 13.47 266.23 280.54 299.52 313.28 59.52 239.60 315.01 38.75 12.22 37.60 34.96 63.52 23.57 39 E9a_E10a KnownJunction 0 27.19 27.89 16.44 18.28 24.45 27.09 21.15 30.11 23.64 11.12 239.22 313.75 262.81 283.13 61.81 159.62 325.39 21.22 12.61 21.22 67.89 42.56 27.66 40 ER10a ExonRegion 1 18.18 15.54 16.87 15.37 28.08 12.45 23.53 20.30 22.58 13.27 200.85 303.58 192.22 279.35 41.05 168.21 267.37 39.40 10.89 30.50 48.60 48.85 24.37 41 E10a_E11a KnownJunction 1 50.45 28.55 26.20 12.82 45.16 2.84 38.55 18.94 27.92 5.45 204.47 287.49 144.31 315.50 32.51 253.44 300.14 49.79 23.53 43.46 72.16 57.80 37.82 42 ER11a ExonRegion 1 19.46 18.24 12.71 15.79 44.33 26.03 40.83 17.10 23.63 12.17 198.19 211.11 109.83 335.25 44.34 226.77 261.81 33.92 16.83 33.06 58.97 43.44 21.52 43 E11a_E12a KnownJunction 1 19.71 26.31 9.70 17.38 37.78 39.07 48.14 11.09 17.19 11.15 178.83 189.96 153.07 329.33 17.80 190.46 175.13 23.34 21.37 32.21 39.85 45.99 40.21 44 ER12a ExonRegion 0 18.04 27.62 9.31 11.66 24.84 11.71 26.87 17.51 15.43 11.14 165.70 123.58 85.17 250.57 38.24 171.81 181.16 32.01 10.67 33.01 44.16 47.11 24.19 45 E12a_E13a KnownJunction 1 17.04 5.39 8.96 13.92 15.62 10.33 44.87 8.34 12.44 15.88 249.17 66.17 64.77 278.71 24.85 230.62 210.47 23.75 26.92 48.26 48.50 39.86 27.06 46 ER13a ExonRegion 0 22.62 8.62 6.40 17.02 17.80 8.48 25.85 17.49 11.33 13.96 204.09 79.00 61.74 247.61 43.52 194.25 212.77 32.85 12.30 33.59 44.18 47.88 20.45 47 E13a_E14a KnownJunction 0 20.08 14.80 14.52 15.58 43.38 16.13 42.97 14.09 10.76 12.52 192.42 81.03 60.39 224.15 52.17 204.73 242.08 35.36 8.09 33.49 38.18 52.48 23.47 48 ER14a ExonRegion 0 19.61 23.57 11.17 9.80 18.18 12.32 28.95 16.98 16.70 12.48 202.74 94.10 56.32 221.12 38.75 167.78 249.24 27.54 15.52 26.79 51.74 38.19 20.93 49 E14a_E15a KnownJunction 1 27.12 30.26 16.23 12.75 27.42 16.18 45.93 30.03 20.08 11.52 272.96 123.49 64.77 211.02 32.76 195.25 361.10 33.54 15.62 39.56 76.91 42.19 43.02 50 ER15a ExonRegion 0 34.84 30.77 18.24 16.12 20.14 17.70 35.75 30.25 22.00 11.91 249.06 92.19 85.57 245.99 58.16 188.02 279.84 44.28 12.25 28.23 50.90 46.49 29.12 51 E15a_E16a KnownJunction 0 67.64 64.00 30.31 16.25 23.68 30.10 26.14 49.70 26.97 12.33 254.85 118.69 150.64 281.07 64.40 233.27 230.11 49.91 13.18 28.19 43.18 69.68 20.74 52 ER16a ExonRegion 0 35.36 62.85 24.55 27.57 24.53 25.35 38.75 31.67 27.12 12.63 296.16 117.35 137.38 286.94 71.20 237.99 293.47 55.74 11.78 32.71 40.61 62.83 33.31 53 E16a_E17a KnownJunction 0 38.82 49.79 28.65 30.60 57.13 32.99 68.50 39.02 38.17 21.89 279.23 127.24 128.56 247.75 97.66 213.62 303.51 40.46 36.71 52.35 27.18 60.44 26.46 54 ER17a ExonRegion 0 35.72 41.74 25.00 25.62 38.63 23.77 43.97 42.97 29.50 20.96 288.15 168.96 202.84 304.01 69.67 286.77 311.32 34.69 18.71 39.63 30.38 82.35 30.80 55 E17a_E18a KnownJunction 0 45.86 109.32 22.50 29.13 15.20 10.73 49.46 30.64 27.29 18.80 311.76 206.77 195.93 339.16 91.35 341.79 349.13 43.03 17.98 35.09 31.44 110.96 18.61 56 ER18a ExonRegion 0 51.61 79.92 26.88 31.65 33.01 32.01 46.77 37.18 31.42 19.46 325.08 280.45 315.21 304.46 90.27 292.90 347.61 33.68 18.27 38.74 46.28 77.46 28.73 57 E18a_E19b KnownJunction 0 62.38 106.17 41.42 32.23 47.88 38.61 57.50 46.95 33.16 31.86 349.88 382.32 252.26 272.88 128.81 346.40 386.72 36.81 20.89 46.60 68.45 87.56 16.05 58 ER19a ExonRegion 0 3.88 2.79 0.90 0.74 2.88 1.68 4.44 0.10 0.88 0.84 5.95 9.94 15.52 8.72 10.76 8.14 12.31 0.79 0.38 1.44 1.64 1.86 1.50 59 E19_Ab KnownBoundary 0 3.48 3.35 0.00 0.00 3.48 0.00 6.18 0.00 0.00 1.10 10.06 6.30 13.47 4.59 8.90 8.20 12.81 0.00 0.00 5.94 2.53 3.06 4.35 60 ER19b ExonRegion 1 42.41 69.08 37.10 29.07 31.73 33.34 33.63 33.29 30.52 21.18 244.96 276.96 357.99 252.71 96.35 221.16 299.82 18.72 14.14 43.13 56.44 57.15 22.00 61 E19_Da NovelBoundary 0 3.48 6.71 7.48 1.96 0.00 0.00 13.60 1.68 2.52 0.00 12.42 6.30 6.82 9.59 0.00 30.76 31.32 5.10 0.00 0.00 3.09 10.41 13.06 62 E19a_E20a KnownJunction 1 32.97 102.42 31.93 29.17 56.54 43.21 20.40 34.21 27.11 11.77 199.52 254.78 424.32 324.68 116.82 244.72 287.05 22.38 14.40 47.49 28.91 63.68 11.01 63 ER20a ExonRegion 1 18.89 33.40 26.52 13.37 29.88 17.99 17.28 27.61 20.84 12.23 154.28 155.97 252.84 200.66 74.54 150.74 204.70 33.71 3.96 29.98 29.58 46.48 23.57 64 E20_Da KnownBoundary 0 9.71 26.38 33.91 12.35 22.75 19.25 26.67 16.27 19.68 14.00 93.08 81.33 129.05 138.44 64.16 119.71 192.43 35.65 4.80 25.95 28.36 42.56 11.18 65 ER20b ExonRegion 0 29.35 33.40 23.41 6.64 19.34 18.05 22.65 18.88 19.19 9.17 165.00 102.78 141.15 217.20 77.75 140.11 220.23 23.87 4.18 32.75 43.05 41.53 26.19 66 E20_Db KnownBoundary 0 6.52 2.57 3.28 0.00 0.00 0.00 3.71 0.00 1.45 0.00 12.27 5.55 0.00 16.48 4.45 23.33 30.95 6.30 0.00 12.08 9.08 0.00 8.28 67 E20b_E21a KnownJunction 1 50.45 13.09 18.27 6.56 31.83 11.19 17.67 21.44 21.99 8.97 170.78 57.47 233.75 225.85 78.25 149.11 202.24 42.32 0.00 21.86 55.11 52.11 23.65 68 E20b_E22a NovelJunction 0 3.78 0.00 4.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.32 6.30 0.00 4.83 0.00 16.41 18.51 0.00 0.00 0.00 0.00 3.00 0.00 69 E20b_E23a KnownJunction 0 3.78 8.75 1.42 1.86 3.23 7.84 0.00 0.00 1.48 1.26 9.27 6.30 0.00 12.66 0.00 7.26 4.68 0.00 0.00 6.14 2.47 2.94 0.00 70 ER20c ExonRegion 0 9.92 6.37 7.02 7.84 5.34 3.91 6.64 5.67 4.62 1.71 27.20 13.04 16.45 21.66 4.78 18.56 26.17 7.34 3.61 8.92 2.60 7.77 4.17 71 E20_Dc NovelBoundary 1 6.89 2.50 3.10 1.47 0.00 2.50 5.26 2.42 3.30 1.37 1.95 44.86 6.82 10.24 4.45 0.00 4.39 1.95 0.00 0.00 0.00 15.92 0.00 72 I20 Intron 0 10.40 4.86 3.64 3.51 9.60 3.65 9.50 7.18 5.37 3.63 26.95 33.82 26.60 22.15 4.40 20.92 26.74 6.83 6.77 5.09 2.05 6.64 5.46 73 I20_AR1 ActiveIntronRegion 0 10.46 4.89 3.66 3.52 9.65 3.67 9.54 7.22 5.40 3.65 27.10 34.00 26.74 22.26 4.42 21.02 26.88 6.86 6.80 5.11 2.06 6.68 5.49 74 E21_Aa NovelBoundary 0 22.60 6.45 9.37 6.16 24.96 6.30 18.50 8.50 4.25 2.71 28.06 57.02 13.15 29.67 0.00 14.70 34.69 10.20 0.00 5.62 11.68 2.57 16.56 75 ER21a ExonRegion 0 60.73 25.78 19.48 12.46 33.60 18.19 24.93 20.23 19.70 14.00 196.53 92.48 188.36 226.00 72.09 212.15 272.58 39.12 10.07 31.09 35.44 40.77 19.15 76 E21a_E22a KnownJunction 0 82.98 18.48 30.63 11.59 42.70 28.17 16.16 28.42 11.78 16.09 183.84 92.88 175.15 177.23 101.00 156.88 200.47 25.25 9.22 39.05 22.67 24.55 24.84 77 E22_Aa NovelBoundary 0 12.82 5.79 14.52 5.13 25.38 4.66 12.94 4.23 10.42 3.55 29.85 12.60 20.45 33.67 0.00 10.85 13.09 1.58 0.00 0.00 5.50 15.06 0.00 78 ER22a ExonRegion 0 60.16 29.82 31.75 24.22 41.82 21.67 42.21 36.99 28.09 15.47 243.06 123.06 163.84 256.41 85.34 229.78 293.66 30.76 14.40 34.55 39.47 53.72 32.53 79 E22a_E23a KnownJunction 0 58.68 27.69 42.64 32.53 33.45 35.55 64.12 54.55 32.44 17.22 206.79 194.91 158.27 195.13 94.81 293.68 177.65 41.12 25.60 23.07 43.18 43.29 27.49 80 ER23a ExonRegion 0 82.62 40.44 28.65 20.57 42.44 39.34 48.00 45.10 26.15 14.62 241.86 166.33 154.77 266.37 107.75 289.78 325.14 42.15 20.56 27.91 49.97 61.08 42.89 81 E23_Da NovelBoundary 0 25.56 8.81 6.95 18.38 11.12 2.90 16.56 8.75 12.53 2.71 37.33 0.00 6.17 17.42 0.00 16.92 29.92 12.02 0.00 3.26 2.72 8.76 0.00 82 E23a_E24a KnownJunction 0 107.20 26.77 21.41 22.87 33.62 24.30 32.72 26.74 18.29 13.08 173.46 115.84 60.55 264.41 98.15 275.06 330.43 38.14 25.60 19.81 37.25 65.03 53.52 83 I23 Intron 1 20.61 17.23 10.41 9.22 8.10 8.41 7.68 9.87 7.24 4.57 44.86 20.17 15.81 29.82 8.66 22.49 25.98 8.90 5.46 11.05 4.45 13.14 5.63 84 I23_AR1 ActiveIntronRegion 1 20.65 17.27 10.43 9.24 8.11 8.43 7.70 9.89 7.26 4.58 44.95 20.21 15.85 29.88 8.68 22.53 26.03 8.92 5.47 11.08 4.45 13.16 5.64 85 E24_Aa NovelBoundary 0 48.82 17.17 14.72 7.33 11.63 9.65 8.52 9.49 12.53 5.94 30.17 0.00 6.66 21.72 24.48 31.62 18.23 4.10 0.00 6.07 15.26 10.65 7.60 86 ER24a ExonRegion 0 90.99 58.89 39.73 26.41 44.46 16.31 34.45 38.23 23.78 18.09 170.12 104.08 86.22 137.95 79.73 104.40 145.97 11.78 7.17 24.66 19.86 51.87 16.30