Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GDA Gene 0 1.44 1.56 0.98 1.29 1.25 0.71 1.55 1.39 1.86 1.82 0.53 1.11 9.94 8.49 6.83 16.83 3.24 2.72 1.44 1.96 19.53 95.73 125.73 2 376989 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 376993 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 376986 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.07 0.00 0.00 0.00 0.00 0.00 0.41 0.58 1.85 0.47 0.00 0.00 0.00 0.00 1.55 4.27 10.55 5 238018 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 358399 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 475764 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 477618 Transcript 0 1.42 1.51 1.10 1.37 1.17 0.69 1.56 1.55 1.85 2.03 0.55 0.96 1.66 0.90 2.12 3.11 1.39 3.00 1.48 1.98 1.76 1.74 7.48 9 414671 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 489618 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.34 0.52 2.43 0.00 0.00 0.00 0.00 0.00 0.79 6.30 11 436438 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.11 0.89 1.36 1.93 0.00 0.00 0.00 0.00 0.94 3.90 17.09 13 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.36 0.00 0.00 0.00 0.00 0.00 2.69 25.35 14 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 0.00 0.00 15 E1_Ad KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 E1_Ae KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.93 4.68 0.00 0.00 0.00 12.05 38.64 140.93 17 ER1b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.45 7.43 2.75 0.00 0.00 0.00 11.02 19.79 86.14 18 ER1c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 8.92 3.30 0.00 0.00 0.00 11.02 20.84 99.85 19 ER1d ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 7.80 3.30 0.00 0.00 0.00 16.53 26.04 108.66 20 ER1e ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.29 1.18 1.09 12.16 4.15 0.00 0.00 0.00 25.20 24.83 71.06 21 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.49 2.47 14.09 26.32 8.13 0.00 0.00 0.00 25.70 67.66 265.99 22 E1a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 2.76 15.71 23 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 0.45 0.00 0.00 0.00 0.00 0.67 0.32 6.22 24 E2a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 ER3a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.38 1.62 11.61 22.59 6.60 0.00 0.00 0.00 26.89 83.76 257.84 26 ER3b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.03 5.38 4.28 25.58 4.64 0.00 0.00 0.00 53.28 80.49 209.41 27 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.33 4.71 0.00 19.14 0.00 0.00 0.00 0.00 52.70 69.32 124.29 29 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.70 0.00 0.00 0.00 0.00 3.46 0.00 6.11 30 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 ER5a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 2.72 0.00 0.00 0.00 0.00 0.00 0.00 8.67 6.02 6.76 27.51 3.22 0.00 0.00 0.00 56.75 80.28 204.28 32 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.34 12.71 5.32 24.44 4.30 0.00 0.00 0.00 63.82 115.00 189.42 33 E6_Ab NovelBoundary 0 3.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32.63 16.89 4.45 28.54 12.72 0.00 0.00 0.00 71.66 78.13 236.11 34 ER6a ExonRegion 0 0.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.66 14.39 2.40 25.62 8.42 0.00 0.00 0.00 68.31 93.69 198.07 35 ER6b ExonRegion 0 1.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27.35 16.43 8.90 31.38 5.54 0.00 0.00 0.00 52.10 103.05 267.58 36 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41.23 12.13 11.25 22.22 4.39 0.00 0.00 0.00 46.95 135.51 289.12 37 ER7a ExonRegion 0 0.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.16 10.50 10.43 38.72 6.85 0.00 0.00 0.02 54.26 108.76 299.65 38 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 E8_Aa NovelBoundary 0 13.19 19.27 21.23 30.57 27.25 5.22 30.07 56.85 29.17 37.45 11.53 6.90 0.00 2.94 4.45 19.57 17.30 35.44 12.33 18.60 5.68 19.29 40.55 40 ER8a ExonRegion 0 6.40 5.27 0.00 0.00 11.56 2.38 4.58 1.11 0.00 0.02 0.84 8.59 15.02 8.29 22.15 12.85 2.85 1.97 8.02 12.86 3.79 2.72 6.22 41 E8_Da NovelBoundary 0 2222.25 1564.26 2789.70 2690.03 1619.95 1120.32 1910.48 3160.77 2872.83 2739.60 1043.11 381.57 469.45 326.45 663.83 1719.04 1829.64 3375.88 1112.78 2066.51 1355.77 687.84 1627.45 42 E8a_E9a KnownJunction 0 2.82 0.00 7.84 0.00 0.00 6.36 0.00 1.56 2.20 0.00 0.00 0.00 0.00 2.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 E9a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.00 3.33 44 ER9a ExonRegion 0 0.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.15 0.00 2.78 27.64 26.57 11.61 53.29 3.18 0.00 1.02 0.00 54.38 170.48 385.12 45 ER10a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.71 0.00 0.00 14.59 11.11 7.55 27.11 0.73 0.00 0.00 0.00 42.44 95.19 218.24 46 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.40 0.00 0.00 20.29 4.71 5.56 23.24 0.00 0.00 0.00 0.00 31.32 88.85 223.74 47 ER11a ExonRegion 0 1.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.58 0.00 0.00 16.81 21.29 5.16 42.30 0.00 0.00 0.00 0.00 38.77 120.34 278.44 48 E11a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.64 5.42 8.90 24.10 0.00 0.00 0.00 0.00 34.41 98.40 233.64 49 E12_Ab NovelBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.06 9.64 15.21 0.00 0.00 0.00 0.00 29.59 41.76 112.17 50 ER12a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.38 10.67 12.43 23.78 0.00 0.00 0.00 0.00 39.19 83.34 227.38 51 ER12b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.00 12.87 13.02 21.75 0.00 0.00 0.00 0.00 48.91 78.72 239.59 52 E12_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.82 14.89 13.35 15.38 0.00 0.00 0.00 0.00 49.98 80.34 252.76 53 ER12c ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.14 22.55 8.43 26.27 2.84 0.00 0.00 0.00 52.38 74.91 236.84 54 E12_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.12 34.57 55 E12a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.82 33.96 0.00 19.65 4.21 0.00 0.00 0.00 45.78 62.95 170.04 56 ER12d ExonRegion 0 8.49 9.08 6.59 8.24 7.00 4.13 9.36 9.29 11.12 12.17 3.31 5.74 9.36 5.38 12.75 13.13 8.34 18.00 8.90 11.90 6.45 10.11 32.56 57 E12_Db NovelBoundary 0 119.80 78.41 28.41 45.25 86.93 39.52 113.67 34.91 27.55 34.22 18.48 48.77 26.13 15.01 24.97 74.17 55.45 30.76 115.11 52.99 35.71 44.46 86.81 58 ER13a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.86 21.71 0.43 20.28 1.60 0.00 0.00 0.00 49.55 76.69 184.49 59 E13a_E14a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.13 4.94 7.43 4.68 0.00 0.00 0.00 59.24 78.69 252.42 60 ER14a ExonRegion 0 0.00 0.15 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 3.96 16.58 7.16 18.22 4.15 0.00 0.00 0.00 52.44 76.38 214.35 61 E14a_E15a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.62 0.00 0.00 0.00 0.00 16.72 0.00 0.00 8.60 0.00 0.00 0.00 33.42 67.72 195.74 62 I14 Intron 0 0.04 0.04 0.00 0.04 0.00 0.00 0.23 0.00 0.06 0.00 0.00 0.00 3.26 1.45 0.51 4.36 0.11 0.00 0.00 0.00 2.09 24.77 27.05 63 I14_SR1 SilentIntronRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.11 0.00 0.00 0.00 0.00 0.00 4.97 1.19 0.34 4.89 0.00 0.00 0.00 0.00 3.81 18.84 26.11 64 I14_AR1 ActiveIntronRegion 0 0.00 0.00 0.00 0.17 0.00 0.00 0.44 0.00 0.11 0.00 0.00 0.00 4.94 2.29 1.20 3.04 0.55 0.00 0.00 0.00 2.61 32.22 28.48 65 I14_SR2 SilentIntronRegion 0 0.06 0.06 0.00 0.00 0.00 0.00 0.20 0.00 0.07 0.00 0.00 0.00 2.06 1.26 0.33 4.64 0.00 0.00 0.00 0.00 1.30 24.30 26.92 66 ER15a ExonRegion 0 0.00 0.62 0.00 0.00 0.00 0.00 0.00 0.00 0.48 0.00 0.00 0.00 3.51 19.77 7.37 14.79 6.78 0.00 0.00 0.00 55.50 96.65 215.03 67 E15a_E16a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 12.99 12.01 5.93 28.62 4.21 0.00 0.00 0.00 37.56 78.87 151.60 68 E16a_E17a KnownJunction 0 3.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.82 14.13 10.75 0.00 4.49 0.00 0.00 0.00 30.27 56.46 179.01 69 ER16a ExonRegion 0 1.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.88 11.54 7.56 19.53 5.31 0.00 0.00 0.00 38.01 70.47 174.21 70 I16_SR1 SilentIntronRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.54 4.40 0.64 1.85 0.00 0.00 0.99 0.00 3.39 22.31 20.18 71 ER17a ExonRegion 0 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.93 21.36 5.37 24.44 2.12 0.00 0.00 0.00 38.35 81.20 227.35 72 E17_Da KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19.97 22.37 5.19 31.62 0.00 0.00 0.00 0.00 28.42 103.30 212.13 73 E17a_E17b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.49 74 ER17b ExonRegion 0 0.00 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 19.51 2.86 23.30 0.00 0.00 0.00 0.00 35.23 87.08 179.14 75 E17_Db KnownBoundary 0 0.00 3.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.71 0.00 22.39 0.00 0.00 0.00 0.00 29.34 75.56 171.75 76 E17b_E17b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.18 0.00 0.00 0.00 0.00 0.00 0.00 2.47 6.06 3.41 77 ER17c ExonRegion 0 0.00 0.03 0.00 0.18 0.12 0.00 0.12 0.00 0.50 0.00 0.08 0.00 17.14 10.37 4.82 18.69 2.11 0.08 0.00 0.00 17.46 162.27 156.54 78 E17_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 57.14 28.43 5.69 65.28 8.42 0.00 0.00 0.00 52.45 352.70 450.63 79 ER17d ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.89 0.00 0.00 0.00 16.50 14.89 12.30 28.90 2.02 0.00 0.00 0.00 36.97 202.80 301.01 80 E17_Dc KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.82 7.30 28.18 0.00 0.00 0.00 0.00 0.00 19.58 135.75 150.58 81 ER17e ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.39 0.00 0.10 0.00 0.00 0.00 4.69 9.17 17.09 3.37 6.07 0.00 0.00 0.00 16.26 128.11 168.18 82 E17_Dd KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 13.15 9.65 14.34 4.02 4.68 0.00 0.00 0.00 5.93 109.00 172.35 83 E17d_E17c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.58 0.00 0.00 0.00 0.00 8.51 11.52 84 E17d_E18a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.70 0.00 0.00 0.00 0.00 0.00 0.00 5.69 7.94 85 E17d_E19a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 86 ER17f ExonRegion 0 0.00 0.48 0.00 0.00 0.00 0.00 0.32 0.00 0.29 0.00 0.00 0.94 7.20 8.70 8.06 21.47 3.67 0.00 0.00 0.00 21.38 143.86 167.05 87 E17_Ac KnownBoundary 0 0.00 3.35 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00 0.00 26.19 33.01 19.31 12.72 0.00 0.00 0.00 28.48 124.61 180.88 88 ER17g ExonRegion 0 0.57 0.80 0.00 0.27 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 5.77 8.67 12.85 19.05 1.99 0.00 0.00 0.00 15.26 147.20 119.57 89 E17_De NovelBoundary 0 0.00 3.35 0.00 1.93 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 6.33 4.94 14.09 11.88 0.00 0.00 0.00 0.00 3.03 58.36 36.96 90 ER17h ExonRegion 0 0.00 2.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.19 2.99 0.00 0.00 0.00 0.00 0.00 0.00 18.01 9.28 91 ER18a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.21 0.00 0.00 0.00 0.00 0.00 1.22 1.73 0.84 1.41 0.00 0.00 0.00 0.00 1.74 4.37 8.01 92 ER19a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.68 1.03 1.35 0.00 0.00 0.00 0.00 0.00 1.58 12.60