Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP11-255A11.3 Gene 0 3.43 27.55 96.88 18.12 2.68 0.79 12.06 19.05 21.51 46.31 0.09 0.00 0.55 3.53 2.48 0.00 0.00 51.10 24.16 68.21 0.53 0.00 0.14 2 433357 Transcript 0 2.33 13.09 67.61 8.94 2.41 0.57 7.49 18.45 15.25 29.64 0.11 0.00 0.18 2.18 1.69 0.00 0.00 19.61 8.76 26.74 0.52 0.00 0.15 3 432139 Transcript 0 0.65 11.42 41.18 8.25 0.00 0.00 6.88 3.04 5.14 21.77 0.00 0.00 0.00 0.56 0.70 0.00 0.00 28.85 9.29 31.35 0.34 0.00 0.00 4 ER1a ExonRegion 0 1.76 13.58 34.85 6.45 2.18 1.50 7.06 8.42 13.55 12.28 0.00 0.00 0.00 0.00 0.91 0.00 0.00 24.43 11.72 33.92 0.00 0.00 1.20 5 E1_Da NovelBoundary 0 9.78 53.87 492.47 36.79 7.81 10.62 16.78 90.36 76.50 135.73 0.00 0.00 6.49 4.83 0.00 0.00 0.00 129.13 101.18 158.45 0.00 0.00 0.00 6 E1a_E2a KnownJunction 0 0.00 0.00 4.67 0.00 0.00 0.00 0.00 0.00 0.00 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.10 0.00 0.00 0.00 0.00 0.00 7 I1 Intron 0 5.80 28.99 124.11 14.48 6.60 1.01 11.62 26.83 20.19 45.91 0.00 0.00 0.00 3.75 2.48 1.63 0.00 43.08 32.28 78.16 0.00 0.00 0.00 8 I1_AR1 ActiveIntronRegion 0 2.21 21.05 73.99 10.55 2.68 1.14 9.92 13.57 10.72 32.68 0.00 0.00 0.00 3.56 3.00 0.45 0.00 30.87 25.72 72.98 0.00 0.00 0.00 9 I1_SR1 SilentIntronRegion 0 12.57 44.39 219.68 22.12 14.00 0.76 15.09 51.91 38.12 71.53 0.00 0.00 0.00 4.20 1.61 3.84 0.00 66.75 45.18 90.02 0.00 0.00 0.00 10 E2_Aa NovelBoundary 0 21.49 108.47 369.80 41.62 11.71 10.79 47.12 78.08 67.88 96.35 0.00 0.00 0.00 15.19 0.00 0.00 0.00 86.68 114.83 157.36 0.00 0.00 0.00 11 ER2a ExonRegion 0 2.96 16.93 49.97 4.06 1.26 1.73 10.57 10.00 7.94 26.85 0.91 0.00 0.00 1.35 3.63 0.00 0.00 15.06 9.35 25.57 0.00 0.00 0.00 12 E2_Da NovelBoundary 0 2.89 13.02 21.08 9.12 0.00 0.00 14.18 0.00 1.39 9.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56.87 21.37 58.48 0.00 0.00 0.00 13 E2a_E3a KnownJunction 0 0.00 0.00 14.52 0.00 0.00 0.00 0.00 2.01 0.00 12.92 0.00 0.00 0.00 2.47 4.45 0.00 0.00 4.60 0.00 5.69 0.00 0.00 0.00 14 I2 Intron 0 4.27 31.71 116.76 18.79 4.98 1.59 16.46 30.42 25.73 53.99 0.00 0.00 0.56 4.44 1.83 0.00 0.00 76.28 33.68 72.56 0.00 0.00 0.00 15 I2_SR1 SilentIntronRegion 0 4.29 31.89 117.42 18.89 5.01 1.60 16.55 30.59 25.88 54.29 0.00 0.00 0.56 4.46 1.84 0.00 0.00 76.70 33.86 72.96 0.00 0.00 0.00 16 E3_Aa NovelBoundary 0 7.26 54.53 307.71 46.48 16.55 2.33 26.98 54.14 60.33 147.53 0.00 0.00 12.99 15.01 4.45 0.00 0.00 105.29 103.25 167.02 0.00 0.00 0.00 17 ER3a ExonRegion 0 6.52 29.33 136.05 23.03 4.49 1.34 11.75 24.63 29.85 61.13 0.00 0.00 1.41 4.52 2.37 0.00 0.00 80.33 31.34 84.92 1.02 0.00 0.00 18 E3_Da NovelBoundary 0 0.00 15.13 36.90 8.99 10.78 0.00 6.32 6.98 9.72 9.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49.87 13.37 19.30 3.15 0.00 0.00 19 E3a_E4a KnownJunction 0 7.41 38.41 188.99 29.03 7.81 0.00 20.31 59.93 46.01 71.10 0.00 0.00 0.00 2.30 0.00 0.00 0.00 21.31 9.13 44.81 3.15 0.00 0.00 20 E3a_E5a NovelJunction 0 0.00 10.06 56.15 11.85 0.00 0.00 10.78 7.15 1.71 21.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42.61 0.00 16.55 0.00 0.00 0.00 21 I3 Intron 0 3.04 23.22 37.33 6.11 1.65 0.63 6.79 2.64 5.29 15.77 0.00 0.00 0.26 0.46 0.00 0.00 0.00 39.50 15.46 33.02 0.15 0.00 0.00 22 I3_AR1 ActiveIntronRegion 0 1.02 10.36 29.76 5.93 1.81 0.00 4.96 3.48 3.82 11.38 0.00 0.00 0.00 0.45 0.00 0.00 0.00 35.83 9.89 29.08 0.74 0.00 0.00 23 I3_AR2 ActiveIntronRegion 0 3.56 28.04 44.08 6.99 1.68 0.91 7.60 2.82 6.53 19.10 0.00 0.00 0.38 0.53 0.00 0.00 0.00 45.04 17.84 36.66 0.00 0.00 0.00 24 I3_AR3 ActiveIntronRegion 0 6.47 36.54 17.23 2.16 2.68 0.00 8.14 0.00 0.51 4.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.21 12.93 19.34 0.00 0.00 0.00 25 E4_Aa NovelBoundary 0 3.78 55.85 83.26 6.19 4.07 0.00 11.75 2.38 1.74 22.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37.76 12.14 31.77 2.90 0.00 0.00 26 ER4a ExonRegion 0 3.16 36.19 108.79 17.32 3.63 0.87 16.48 25.35 24.53 54.71 0.00 0.00 0.00 4.30 2.93 0.00 0.00 48.44 14.32 72.58 0.49 0.00 0.00 27 E4_Da KnownBoundary 0 0.00 28.42 80.81 21.38 0.00 0.00 20.67 4.35 8.30 23.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 58.95 30.78 47.55 0.00 0.00 0.00 28 E4a_E5a KnownJunction 0 0.00 0.00 98.64 7.42 0.00 0.00 4.46 38.40 21.90 47.38 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.09 8.56 6.07 0.00 0.00 0.00 29 ER4b ExonRegion 0 1.29 22.83 70.23 14.43 0.00 0.00 9.26 6.09 7.04 33.08 0.00 0.00 0.00 1.13 1.41 0.00 0.00 50.91 18.58 56.25 0.67 0.00 0.00 30 E4_Db NovelBoundary 0 3.63 55.19 86.66 11.69 0.00 2.10 15.94 9.28 15.13 20.28 0.00 0.00 0.00 7.30 0.00 0.00 0.00 65.08 13.84 29.79 0.00 0.00 0.00 31 E4b_E5a KnownJunction 0 0.00 0.00 12.12 2.06 0.00 0.00 4.50 0.00 3.24 10.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.80 0.00 6.46 0.00 0.00 0.00 32 I4 Intron 0 1.88 17.14 14.58 7.21 3.56 0.00 6.46 1.14 7.35 15.92 0.00 0.00 0.00 1.31 1.82 0.00 0.00 15.49 9.89 25.48 0.00 0.00 0.00 33 I4_SR1 SilentIntronRegion 0 1.89 17.29 14.69 7.27 3.59 0.00 6.52 1.15 7.41 16.06 0.00 0.00 0.00 1.32 1.83 0.00 0.00 15.61 9.98 25.70 0.00 0.00 0.00 34 E5_Aa NovelBoundary 0 0.00 12.89 73.98 11.32 0.00 0.00 6.76 6.82 18.69 28.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28.64 24.28 70.37 0.00 0.00 0.00 35 ER5a ExonRegion 0 2.79 36.84 119.27 27.37 2.86 0.00 15.55 27.97 30.58 61.34 0.00 0.00 0.73 6.05 3.37 0.00 0.00 51.10 36.81 91.93 0.41 0.00 0.00 36 ER5b ExonRegion 0 0.00 6.44 13.17 1.48 3.57 0.00 5.74 4.18 2.78 1.53 0.00 0.00 0.00 6.77 2.18 0.00 0.00 0.00 0.00 12.94 0.00 0.00 0.00 37 IG12_AR1 ActiveIntergenicRegion 0 1.39 13.64 10.37 3.22 1.02 0.00 4.31 0.00 0.40 2.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.08 2.60 19.41 0.00 0.00 0.00 38 IG12_AR3 ActiveIntergenicRegion 0 0.73 8.76 8.45 4.88 0.00 0.00 5.25 0.44 1.90 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.19 2.20 19.03 0.00 0.00 0.00