Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 VCP Gene 0 222.50 174.01 306.09 141.10 192.35 232.87 207.97 246.60 298.35 291.01 803.39 422.17 230.94 865.61 804.89 774.68 683.67 474.72 376.65 353.34 606.68 464.28 405.36 2 358901 Transcript 0 225.62 192.04 279.20 133.19 151.84 193.59 215.62 213.73 251.99 221.67 570.78 356.84 212.44 793.08 667.26 637.54 488.45 397.19 336.90 332.35 470.37 406.21 358.03 3 448530 Transcript 0 1.64 1.68 2.89 0.00 3.41 3.29 0.00 1.44 6.73 2.29 3.50 0.29 3.01 9.07 13.67 3.12 7.98 1.09 0.00 0.21 16.28 10.17 1.81 4 493886 Transcript 0 28.05 13.75 34.20 9.38 14.46 19.89 22.31 23.61 24.98 20.17 42.87 39.68 17.51 61.20 50.72 72.50 50.35 33.17 34.47 25.99 38.10 30.54 34.09 5 417448 Transcript 0 10.89 4.83 6.13 0.80 2.93 3.52 4.05 3.31 4.19 3.02 4.20 0.00 3.62 9.21 11.13 15.57 10.68 8.24 5.98 4.63 5.23 4.94 4.64 6 480327 Transcript 0 15.79 3.36 28.99 6.39 11.06 8.92 14.62 22.14 29.53 10.32 34.87 16.52 11.03 28.78 27.47 56.59 40.90 23.59 21.61 13.37 21.42 35.93 27.34 7 479300 Transcript 0 12.01 3.88 15.82 5.17 6.40 4.50 13.94 10.28 9.46 8.43 20.53 8.87 7.74 21.86 26.64 26.66 22.32 17.58 15.59 10.08 23.37 22.07 18.75 8 466100 Transcript 1 91.47 14.99 34.37 21.89 42.13 17.52 35.32 27.59 19.05 19.69 30.88 60.63 29.53 36.49 37.59 41.18 32.67 28.49 17.72 16.94 23.86 37.10 30.15 9 IG9 Intergenic 0 1.48 1.77 6.69 1.42 6.53 3.68 12.00 6.96 7.22 9.39 12.64 6.53 1.49 9.94 2.51 5.44 4.60 9.29 6.94 10.02 2.69 4.54 3.07 10 IG9_SR1 SilentIntergenicRegion 0 1.48 1.78 6.71 1.42 6.55 3.69 12.05 6.98 7.25 9.42 12.68 6.55 1.50 9.97 2.52 5.46 4.62 9.32 6.97 10.05 2.70 4.56 3.08 11 ER1a ExonRegion 0 1.07 2.55 7.19 2.08 6.83 7.39 8.20 7.54 9.00 10.27 17.99 9.11 1.90 10.71 7.38 9.10 6.90 17.35 11.04 12.87 8.78 5.01 4.94 12 E1_Ab KnownBoundary 0 9.48 35.65 16.47 1.63 26.57 133.39 59.27 4.76 24.62 17.65 62.86 17.26 0.00 46.56 105.07 34.86 50.86 53.35 51.95 30.23 124.67 60.99 31.76 13 ER1b ExonRegion 1 50.23 59.08 21.73 7.36 88.75 398.73 204.11 29.45 36.69 47.16 252.09 5.16 0.00 403.26 373.55 213.61 205.42 136.52 103.20 85.90 270.43 101.67 156.40 14 E1_Ac KnownBoundary 1 78.01 85.45 55.05 15.45 117.15 384.55 185.48 75.37 61.17 89.37 331.19 16.81 0.00 204.37 177.76 257.62 202.15 283.79 144.57 75.42 235.74 86.40 142.21 15 ER1c ExonRegion 1 19.87 23.16 49.59 16.95 22.05 62.76 25.74 46.96 65.96 81.38 281.54 41.37 35.57 369.19 430.85 191.52 253.22 122.44 88.11 134.37 271.68 133.11 96.58 16 E1_Da KnownBoundary 0 0.00 0.00 7.63 1.50 3.74 0.00 0.00 8.21 13.60 7.15 14.95 5.85 13.47 9.36 13.23 16.75 16.46 14.43 0.00 2.49 21.00 10.96 7.26 17 E1a_E3a KnownJunction 1 36.90 65.19 143.99 67.89 61.12 100.40 58.25 114.47 169.88 167.46 492.34 87.18 63.79 738.01 746.28 509.44 476.11 291.25 309.66 317.73 527.02 354.97 277.94 18 ER1d ExonRegion 0 0.32 3.36 5.78 0.00 3.26 0.79 0.00 2.88 8.34 1.89 6.99 0.58 6.02 8.61 13.25 6.24 15.95 2.19 0.00 0.43 14.58 8.65 3.62 19 E1b_E3a KnownJunction 0 2.96 0.00 0.00 0.00 3.57 5.79 0.00 0.00 5.12 2.69 0.00 0.00 0.00 9.54 14.09 0.00 0.00 0.00 0.00 0.00 17.98 11.70 0.00 20 ER2a ExonRegion 0 21.77 9.66 12.26 1.61 5.86 4.48 8.09 6.62 8.38 6.04 8.41 0.00 0.91 13.89 22.27 15.41 13.13 14.49 11.96 9.25 10.46 4.43 9.29 21 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 6.33 4.53 0.00 15.72 8.23 1.99 0.00 0.00 0.00 5.45 0.00 22 I2_AR1 ActiveIntronRegion 0 45.73 24.73 61.01 17.74 48.33 14.50 31.10 23.41 31.51 15.94 20.31 22.79 22.72 23.93 40.25 42.46 25.33 27.10 54.91 25.87 20.54 15.50 34.32 23 I2_SR3 SilentIntronRegion 0 93.23 44.96 59.91 19.17 32.90 14.70 44.64 40.94 34.27 24.30 23.41 22.93 23.60 20.00 43.61 34.92 39.71 14.55 44.50 27.66 11.84 18.95 62.86 24 ER3a ExonRegion 0 104.96 130.95 257.26 135.74 230.97 496.35 291.66 259.62 386.64 377.69 1277.15 602.99 295.68 1171.29 1100.30 965.60 1002.88 649.96 489.55 563.11 968.43 708.77 494.35 25 E3a_E4a KnownJunction 0 125.28 173.19 317.11 167.78 122.24 283.93 265.73 287.81 449.27 430.01 1400.93 854.38 326.44 1254.88 1107.98 965.13 1056.75 645.55 673.71 621.72 996.04 672.96 434.24 26 ER4a ExonRegion 0 146.33 167.62 376.50 205.16 175.75 270.76 244.11 371.79 517.63 505.96 1624.95 1347.67 507.69 1695.51 1214.17 1350.12 1421.06 865.02 656.42 743.29 1160.18 880.67 660.68 27 E4a_E5a KnownJunction 0 168.18 167.80 510.18 258.77 171.82 298.07 250.40 428.03 576.44 543.61 1534.86 1565.16 603.37 1807.88 2036.84 1695.88 1438.15 1074.80 1068.45 794.17 1036.75 944.28 770.57 28 ER5a ExonRegion 0 151.40 209.00 393.91 234.18 233.95 304.23 278.86 361.21 540.75 537.77 1733.05 1675.44 559.36 1836.99 1257.07 1592.23 1499.48 1106.45 810.02 793.96 1257.33 881.39 820.66 29 E5a_E6a KnownJunction 1 228.56 296.20 476.36 267.50 294.31 397.78 363.99 447.21 596.90 548.47 1619.41 2008.10 496.56 1959.22 1216.02 1952.82 1565.96 1275.69 828.92 841.66 1240.12 959.53 1030.42 30 ER6a ExonRegion 1 249.04 260.69 450.15 260.31 281.62 387.85 354.27 440.42 620.40 594.67 1767.05 1837.38 494.80 1958.69 1382.12 2005.44 1525.38 1339.21 1147.35 840.48 1252.32 1119.02 1042.02 31 E6_Da KnownBoundary 0 461.86 324.74 523.99 307.99 392.19 455.99 473.56 508.66 684.80 688.26 1946.44 1910.87 636.32 1967.16 1726.81 2157.21 1511.55 1378.57 1481.27 976.08 1256.55 1197.48 1084.71 32 ER6b ExonRegion 0 322.42 272.71 398.50 242.97 284.67 429.96 402.86 399.62 527.47 540.13 1755.78 1426.49 651.91 1852.16 1371.41 1657.79 1562.71 1153.38 916.41 736.35 1281.72 896.77 854.59 33 E6b_E7a KnownJunction 0 360.58 329.48 359.36 191.28 332.68 474.27 506.68 381.66 500.95 499.01 1865.47 1405.21 769.27 1996.30 1194.27 1580.01 1573.72 994.96 876.45 782.79 1276.51 1040.66 835.28 34 ER7a ExonRegion 0 288.48 282.31 365.83 209.54 286.10 391.10 453.85 384.49 511.89 529.12 1853.46 1470.50 685.10 1930.35 1166.09 1613.86 1573.87 1071.46 858.38 733.24 1264.32 1077.02 827.77 35 E7_Da KnownBoundary 0 338.36 330.80 428.70 259.61 250.34 391.65 524.08 433.00 572.07 617.50 1751.44 1473.48 596.23 1758.79 1154.22 1656.83 1595.70 1069.37 931.32 760.68 1230.36 1157.07 870.11 36 ER7b ExonRegion 0 245.52 326.23 391.55 242.50 278.22 402.84 360.09 452.23 559.72 539.32 1709.44 1322.42 575.34 1727.23 1133.44 1761.53 1649.87 893.27 944.43 661.79 1256.40 1108.32 978.73 37 E7b_E8a KnownJunction 0 328.35 385.52 433.25 214.26 357.30 441.79 473.73 477.24 571.32 547.18 1866.58 1352.69 771.38 1875.58 1181.29 1750.40 1765.96 1048.69 870.24 757.80 1372.82 917.83 818.29 38 ER8a ExonRegion 0 228.17 326.28 420.42 236.92 335.20 445.31 402.32 454.16 591.78 532.11 1907.45 1312.04 724.72 1896.25 1196.25 1838.19 1631.96 1128.63 933.22 692.42 1358.40 1044.33 921.74 39 E8a_E9a KnownJunction 0 292.35 311.79 529.02 313.75 343.12 467.74 493.12 517.70 588.97 528.27 1638.63 1481.88 848.48 1959.04 1135.80 1845.58 1394.95 1225.74 943.93 815.90 1295.78 987.02 993.97 40 ER9a ExonRegion 0 281.75 324.33 501.63 271.20 321.25 497.94 430.25 445.97 625.28 521.88 1694.27 953.65 560.95 1902.18 1289.78 1766.55 1488.75 1058.79 832.14 751.20 1311.60 986.81 909.02 41 E9_Da KnownBoundary 0 36.45 8.49 22.86 3.00 12.99 11.58 32.28 28.59 23.61 10.40 31.32 32.56 0.00 34.20 13.35 43.92 13.28 16.66 12.61 21.22 19.52 24.74 36.02 42 E9a_E9b KnownJunction 0 496.61 440.58 604.65 315.31 304.92 481.37 516.88 492.52 590.18 514.81 1474.85 919.20 558.89 2098.78 1573.28 1676.74 1272.09 1057.48 861.20 847.16 1235.42 996.82 936.43 43 ER9b ExonRegion 0 28.05 13.75 34.20 9.38 14.46 19.89 22.31 23.61 24.98 20.17 42.87 39.68 17.51 61.20 50.72 72.50 50.35 33.17 34.47 25.99 38.10 30.54 34.09 44 E9_Ab KnownBoundary 0 47.56 11.71 33.00 9.26 25.04 22.88 23.49 24.36 20.80 14.08 22.69 42.46 5.84 58.45 32.26 52.04 81.07 17.70 34.92 18.22 27.99 24.74 22.62 45 ER9c ExonRegion 0 406.76 346.36 587.73 278.86 335.68 431.78 420.25 453.10 570.62 557.03 1605.37 782.16 570.17 1783.94 1431.09 1570.34 1424.42 948.16 799.36 789.17 1199.31 947.55 827.35 46 E9b_E10a KnownJunction 0 484.83 358.23 533.72 268.73 336.67 496.42 479.83 424.01 509.72 568.99 1203.30 801.86 528.54 1866.57 1658.82 1480.55 1232.72 621.80 741.01 906.67 1047.31 1002.70 755.46 47 ER10a ExonRegion 0 394.80 360.32 566.57 288.91 419.96 544.52 452.57 454.99 510.18 567.60 1659.33 828.95 501.36 1974.33 1505.70 1798.83 1351.39 847.66 842.32 861.03 1133.37 1027.56 888.82 48 E10_Ab KnownBoundary 0 532.02 380.85 646.75 313.08 625.47 649.29 550.27 498.19 548.35 594.35 1888.06 1117.41 520.75 2265.12 1729.53 1957.86 1576.62 992.73 1049.63 861.99 1162.16 1217.02 975.36 49 ER10b ExonRegion 0 353.34 303.00 570.56 280.60 352.90 517.13 403.81 435.67 504.11 539.52 1820.39 847.51 515.90 1781.32 1479.75 1535.52 1529.44 1019.89 694.89 774.06 1165.64 954.80 822.37 50 E10a_E11a KnownJunction 0 416.15 350.14 588.03 306.65 290.24 545.82 419.41 448.65 525.86 518.46 1596.93 742.29 515.88 1312.68 1597.63 1565.23 1434.22 1038.70 593.62 832.78 1217.20 851.70 768.18 51 ER11a ExonRegion 0 298.35 279.82 492.48 247.19 258.85 378.16 321.79 406.91 486.10 544.63 1636.70 798.30 398.91 1628.03 1356.75 1527.89 1380.15 1011.38 693.87 697.04 1204.51 828.38 740.64 52 E11a_E12a KnownJunction 0 413.93 305.80 594.12 229.24 388.71 398.46 394.68 447.75 564.87 541.70 1489.27 715.88 367.83 1841.55 1438.91 1575.57 1264.05 1107.84 699.88 653.43 1136.70 1059.58 857.05 53 ER12a ExonRegion 0 416.85 348.57 531.10 261.18 345.91 423.12 360.23 488.25 526.83 584.07 1555.83 562.87 335.70 1635.58 1373.40 1546.67 1372.05 1043.57 664.47 605.57 1228.88 796.21 800.49 54 E12_Da KnownBoundary 0 0.00 0.00 23.24 3.30 11.54 0.00 14.49 13.84 20.57 4.78 34.43 13.35 0.00 23.66 38.32 35.46 34.69 14.09 15.15 21.60 26.50 25.66 53.78 55 E12a_E12b KnownJunction 0 619.89 407.89 563.20 281.75 381.49 554.96 472.63 538.81 582.66 638.48 1688.16 594.94 292.03 1608.81 1343.10 1610.52 1522.20 999.61 772.54 555.89 1127.31 900.19 859.01 56 ER12b ExonRegion 0 15.79 3.36 28.99 6.39 11.06 8.92 14.62 22.14 29.53 10.32 34.87 16.52 11.03 28.78 27.47 56.59 40.90 23.59 21.61 13.37 21.42 35.93 27.34 57 E12_Ab KnownBoundary 0 19.71 3.09 37.49 3.16 16.81 2.44 32.15 20.66 23.41 11.93 23.85 36.16 20.45 22.01 18.67 52.12 17.20 22.26 11.95 8.63 16.87 20.27 29.79 58 ER12c ExonRegion 0 501.20 389.01 601.55 280.17 371.30 503.20 403.19 525.52 605.32 616.43 1687.02 499.01 375.82 1786.86 1468.28 1657.42 1383.56 1065.25 755.73 600.68 1220.23 952.87 883.68 59 E12b_E13b KnownJunction 0 477.34 411.83 688.62 338.25 339.05 491.36 424.18 474.77 599.24 609.28 1296.96 471.60 296.57 1763.33 1578.96 1779.11 1336.88 1149.38 1042.19 493.12 1138.56 1108.27 1051.08 60 E13_Aa NovelBoundary 0 1578.58 1818.89 3687.27 3948.85 1456.37 1183.30 2402.85 3664.75 3153.15 3057.72 480.23 560.43 452.41 282.07 571.11 1507.89 1205.23 4182.60 1056.03 1960.40 853.70 559.92 1389.37 61 ER13a ExonRegion 0 24.02 7.76 30.42 8.07 12.80 9.01 25.67 19.41 17.68 15.72 32.04 17.74 13.92 36.68 46.51 48.36 42.45 33.92 29.05 18.73 43.81 42.06 36.52 62 E13_Ab KnownBoundary 0 15.48 5.92 42.46 5.49 16.38 8.06 22.96 21.40 15.71 14.37 24.74 18.61 39.12 29.43 28.18 86.30 38.34 35.11 19.67 5.75 30.33 40.84 46.86 63 ER13b ExonRegion 0 432.65 312.52 688.40 310.71 324.22 456.17 360.52 481.39 600.45 614.46 1406.31 528.44 416.62 1898.07 1462.29 1681.21 1384.57 942.42 712.20 549.01 1289.71 980.87 818.99 64 E13_Da KnownBoundary 0 619.00 350.53 791.78 338.35 368.85 488.70 409.79 553.27 639.90 645.65 1237.42 416.99 404.68 1626.12 1440.02 1422.87 1223.47 845.40 707.03 606.25 1038.97 813.73 690.08 65 ER13c ExonRegion 0 582.00 395.61 832.13 359.57 420.52 521.86 449.54 557.52 665.15 621.40 1692.33 596.57 549.78 1723.30 1797.88 1694.61 1384.34 1064.41 844.50 654.09 1302.72 908.66 901.22 66 E13b_E14a KnownJunction 0 676.34 441.57 993.84 401.48 446.18 433.84 408.81 656.94 744.38 758.85 1957.65 560.28 437.96 1915.72 2199.89 1569.08 1520.15 1222.67 909.01 795.13 1533.68 930.38 878.39 67 ER14a ExonRegion 0 493.32 283.83 736.74 294.16 413.33 463.35 347.88 446.05 594.75 576.32 1603.92 694.07 488.64 1728.40 2060.95 1565.22 1339.91 843.79 671.19 661.10 1290.78 875.00 799.07 68 E14a_E15b KnownJunction 0 641.89 258.90 783.95 342.15 527.59 503.74 481.59 544.23 690.88 583.20 1719.38 590.29 401.43 1692.81 2157.25 1444.83 1219.17 954.01 739.22 748.66 1237.59 748.76 854.91 69 ER14b ExonRegion 0 0.00 0.00 1.23 2.27 0.00 0.00 2.21 1.15 1.24 1.15 9.02 0.00 1.56 7.04 6.77 4.95 2.20 1.23 2.12 1.42 2.94 2.08 0.98 70 I14_SR1 SilentIntronRegion 0 52.76 12.16 34.89 15.71 33.04 6.72 25.98 15.91 19.74 16.10 34.51 27.42 16.60 23.50 30.06 26.09 21.23 10.12 10.48 11.47 10.90 43.57 19.06 71 E15_Aa NovelBoundary 0 149.14 12.89 32.55 36.29 55.18 7.78 45.89 27.77 30.64 22.86 29.69 37.96 46.75 26.02 30.41 19.82 32.91 9.78 9.04 8.25 3.15 64.23 15.28 72 ER15a ExonRegion 0 91.47 14.99 34.37 21.89 42.13 17.52 35.32 27.59 19.05 19.69 30.88 60.63 29.53 36.49 37.59 41.18 32.67 28.49 17.72 16.94 23.86 37.10 30.15 73 E15_Ab KnownBoundary 0 76.68 9.74 51.59 19.91 19.19 0.00 25.04 47.48 19.97 29.47 20.22 19.21 6.82 13.77 33.01 43.41 34.69 34.74 3.67 30.04 20.82 19.35 27.66 74 ER15b ExonRegion 0 540.25 320.80 636.09 260.70 451.77 488.80 454.30 511.86 558.50 545.91 1528.17 461.65 264.26 1584.80 1973.36 1316.09 1144.42 881.75 582.76 673.15 1130.09 738.77 700.66 75 E15a_E16a KnownJunction 1 656.49 387.50 645.34 236.00 588.37 380.86 378.65 456.00 550.72 543.63 1347.29 306.25 284.56 1113.31 1747.21 1195.75 1021.60 882.05 581.00 613.41 948.78 592.92 493.14 76 ER16a ExonRegion 0 526.21 343.59 613.74 218.80 378.89 355.65 307.87 429.11 466.97 497.53 1218.77 351.29 278.12 1233.10 1710.69 1047.08 932.83 771.58 497.17 505.45 902.64 576.09 546.04 77 E16_Da KnownBoundary 0 669.30 383.62 632.27 249.15 416.98 465.24 365.49 502.05 483.94 482.71 1044.69 320.05 225.63 1121.91 1755.86 1037.76 780.74 745.12 447.73 496.44 791.31 660.34 602.41 78 ER16b ExonRegion 0 524.50 351.57 537.81 230.84 403.55 342.13 355.10 462.62 471.27 441.45 764.71 228.02 148.75 1004.35 1404.91 848.54 657.78 370.48 388.32 465.84 652.25 574.02 465.10 79 E16_Db KnownBoundary 0 439.86 367.96 679.90 266.73 752.80 395.85 495.59 479.74 527.86 480.45 663.96 281.49 162.00 843.14 1176.10 720.32 471.90 354.88 364.90 440.90 463.45 638.60 446.88 80 ER16c ExonRegion 0 179.18 133.00 225.76 82.17 143.78 92.00 121.79 141.12 156.80 139.93 219.49 142.20 76.53 269.76 421.11 226.78 186.37 116.76 138.44 137.02 166.91 216.79 132.71 81 IG8 Intergenic 0 11.17 7.93 8.85 15.72 15.07 5.56 25.98 12.20 12.71 7.03 1.52 8.25 12.46 1.61 5.81 3.30 5.90 8.46 9.14 8.75 2.26 1.18 8.35 82 IG8_SR1 SilentIntergenicRegion 0 11.17 7.93 8.85 15.72 15.07 5.56 25.98 12.20 12.71 7.03 1.52 8.25 12.46 1.61 5.81 3.30 5.90 8.46 9.14 8.75 2.26 1.18 8.35