Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C9orf24 Gene 0 2.60 4.86 13.33 2.99 7.55 3.88 7.43 11.14 20.55 12.48 0.12 0.00 0.00 0.16 0.06 0.00 0.00 15.22 3.71 11.16 0.68 0.77 1.35 2 444988 Transcript 0 0.00 1.36 1.33 0.65 1.20 2.16 1.94 1.74 1.27 0.46 0.31 0.00 0.00 0.00 0.00 0.00 0.00 2.17 1.37 1.16 0.00 0.00 0.00 3 340854 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 412555 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 340793 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 297623 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 444429 Transcript 0 0.00 0.00 2.84 0.00 1.18 0.76 1.73 3.64 1.12 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.93 0.43 0.00 0.00 0.00 8 379133 Transcript 0 0.00 0.00 1.11 0.00 0.20 1.43 4.81 0.00 0.27 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.84 0.00 0.00 0.00 0.00 0.79 9 379127 Transcript 0 0.00 0.00 1.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 379126 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 379124 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 379112 Transcript 0 0.13 0.65 0.00 1.65 0.00 0.00 0.38 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.18 0.00 0.45 0.00 0.03 2.14 13 481295 Transcript 0 0.00 1.85 3.45 1.21 0.12 0.25 2.65 1.77 2.11 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.32 0.07 4.16 1.45 0.00 0.67 14 IG34_AR1 ActiveIntergenicRegion 0 1.05 15.10 9.95 3.02 2.65 5.45 8.52 11.46 19.14 10.16 0.00 0.00 0.00 0.00 0.00 0.00 1.63 13.60 0.00 16.81 0.00 1.03 2.91 15 ER1a ExonRegion 0 1.27 4.17 3.86 0.00 2.41 1.47 5.69 7.09 2.16 1.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.07 0.00 6.60 1.76 0.00 0.00 16 ER1b ExonRegion 0 4.18 15.58 23.48 4.66 19.90 12.36 25.40 31.53 35.20 24.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42.25 10.72 26.15 2.48 1.04 0.99 17 E1_Ac NovelBoundary 0 11.11 12.50 23.36 5.86 20.20 17.15 41.78 34.87 46.87 18.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46.26 0.00 44.23 0.00 0.00 3.93 18 E1_Da NovelBoundary 0 24.37 33.35 29.92 1.50 11.71 15.62 27.20 14.21 29.57 18.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.98 9.60 9.33 0.00 0.00 0.00 19 E1a_E2a KnownJunction 0 7.11 0.00 10.20 0.00 28.52 0.00 4.06 7.15 44.47 16.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.20 0.00 14.13 0.00 0.00 0.00 20 ER1c ExonRegion 0 8.68 5.76 14.17 1.27 21.67 5.13 16.73 15.15 39.28 19.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.07 0.00 24.54 0.00 0.14 0.00 21 I1 Intron 0 4.82 17.07 12.97 5.26 17.33 11.38 13.31 17.94 11.84 8.32 0.00 0.16 0.34 0.00 0.09 0.00 0.44 11.90 5.12 16.63 0.20 0.65 1.18 22 I1_AR1 ActiveIntronRegion 0 6.57 16.23 8.09 3.60 13.05 14.64 17.02 10.28 11.43 4.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.16 4.24 11.32 0.98 2.77 0.00 23 I1_SR1 SilentIntronRegion 0 7.30 18.13 17.96 6.39 31.02 11.74 23.63 20.72 13.44 5.61 0.00 1.00 0.00 0.00 0.00 0.00 0.00 9.43 5.62 14.75 0.62 0.00 1.65 24 I1_AR2 ActiveIntronRegion 0 4.66 16.27 19.22 4.93 20.41 16.43 14.43 29.42 17.62 13.15 0.00 0.00 0.41 0.00 0.00 0.00 0.70 22.04 4.65 24.75 0.00 0.44 1.88 25 E2_Aa NovelBoundary 0 0.00 0.00 3.02 2.03 24.02 0.00 2.25 3.49 10.56 5.16 0.00 0.00 0.00 0.00 0.00 3.33 0.00 6.72 0.00 3.26 3.15 0.00 3.84 26 ER2a ExonRegion 0 3.34 2.80 11.31 5.44 15.35 4.72 3.73 8.06 44.24 25.03 0.00 0.00 0.00 0.47 0.00 0.00 0.00 17.69 4.48 16.87 1.55 0.73 2.07 27 E2a_E3a KnownJunction 0 2.74 0.00 10.59 1.43 14.43 2.67 7.29 13.35 44.73 18.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40.91 0.00 21.35 0.00 0.00 0.00 28 ER3a ExonRegion 0 3.96 5.52 12.32 3.29 6.27 3.22 7.96 15.26 43.44 17.74 0.00 0.00 0.00 0.59 0.00 0.00 0.00 17.43 0.00 18.56 0.00 0.92 2.58 29 E3_Da KnownBoundary 0 0.00 0.00 4.85 0.00 3.82 2.67 1.72 9.69 0.00 1.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.07 0.00 0.00 0.00 30 E3a_E4e KnownJunction 0 2.82 2.96 3.84 3.70 21.99 0.00 0.00 7.02 37.15 22.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.17 0.00 8.95 0.00 0.00 0.00 31 ER3b ExonRegion 0 0.00 0.00 2.84 0.00 1.18 0.76 1.73 3.64 1.12 1.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.93 0.43 0.00 0.00 0.00 32 E3_Db NovelBoundary 0 3.26 0.00 4.91 1.43 0.00 0.00 4.20 0.00 5.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.50 0.00 2.88 0.00 0.00 3.59 33 ER4a ExonRegion 0 0.00 0.00 1.11 0.00 0.20 1.43 4.81 0.00 0.27 0.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.84 0.00 0.00 0.00 0.00 0.79 34 E4_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 5.22 10.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.13 0.00 0.00 0.00 0.00 0.00 35 E4_Ac KnownBoundary 0 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.49 0.00 0.00 0.00 0.00 4.27 36 E4_Ad KnownBoundary 0 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 ER4b ExonRegion 0 0.00 0.37 11.75 0.00 2.68 3.67 5.66 0.00 1.24 2.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.04 0.00 0.00 0.00 0.00 2.94 38 E4_Da KnownBoundary 0 0.00 3.09 11.29 0.00 0.00 0.00 0.00 0.00 0.00 1.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.49 0.00 2.68 0.00 0.00 0.00 39 E4a_E4e KnownJunction 0 0.00 0.00 1.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 ER4c ExonRegion 0 0.00 2.03 16.28 0.00 2.68 3.67 1.32 0.00 1.24 2.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.96 0.00 1.82 0.00 0.00 2.94 41 ER4d ExonRegion 0 0.00 2.03 17.16 0.00 2.68 3.67 1.32 0.00 1.24 3.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.54 0.00 2.13 0.00 0.00 2.94 42 ER4e ExonRegion 0 2.66 0.94 14.15 0.07 1.73 0.04 0.73 1.73 1.85 2.08 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.48 0.00 2.44 0.00 1.27 0.21 43 E4_Ae KnownBoundary 0 0.00 0.00 15.97 0.00 4.16 0.00 4.46 5.09 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.11 0.00 0.00 0.00 0.00 0.00 44 ER4f ExonRegion 0 2.60 1.19 19.59 2.65 11.95 4.65 6.58 9.38 32.95 16.85 0.00 0.00 0.00 0.00 1.39 0.00 0.00 10.35 0.00 7.49 0.00 0.03 2.00 45 E4b_E5a KnownJunction 0 0.00 0.00 24.30 1.56 0.00 0.00 3.93 9.12 24.91 15.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.93 0.00 9.33 0.00 0.00 0.00 46 ER5a ExonRegion 0 0.06 1.04 28.72 3.16 3.59 0.34 2.58 10.94 26.44 13.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.59 4.28 12.71 0.00 0.80 0.00 47 E5_Da KnownBoundary 0 0.00 2.83 34.83 2.06 0.00 0.00 0.00 18.15 38.02 25.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33.33 0.00 8.76 0.00 3.12 0.00 48 E5a_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49 ER5b ExonRegion 0 0.70 1.51 15.60 1.79 5.11 1.38 1.33 7.56 15.65 11.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.64 2.11 3.73 0.00 0.30 0.97 50 E5_Db KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51 E5b_E6b KnownJunction 0 0.00 0.00 17.50 0.00 3.74 0.00 0.00 7.11 18.29 9.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.68 0.00 6.46 0.00 0.00 0.00 52 E5_Dc KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 2.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 E5c_E6b KnownJunction 0 0.00 0.00 2.57 1.70 0.00 0.00 0.00 5.96 1.50 2.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.45 0.00 2.43 0.00 0.00 0.00 54 ER5c ExonRegion 0 0.00 0.00 2.45 1.36 0.00 1.83 1.32 10.37 4.20 2.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 1.27 0.00 0.00 0.00 0.00 55 ER5d ExonRegion 0 0.00 1.36 1.33 0.65 1.20 2.16 1.94 1.74 1.27 0.46 0.31 0.00 0.00 0.00 0.00 0.00 0.00 2.17 1.37 1.16 0.00 0.00 0.00 56 E5_Ab KnownBoundary 0 0.00 6.38 2.69 3.80 0.00 0.00 3.97 5.91 6.45 1.67 2.53 0.00 0.00 0.00 0.00 0.00 0.00 3.86 8.28 2.62 0.00 0.00 0.00 57 ER5e ExonRegion 0 1.72 5.54 0.59 2.68 0.00 0.00 1.42 2.18 2.36 2.77 1.10 0.00 0.00 0.00 0.00 0.00 0.00 4.11 2.91 4.70 0.00 1.80 5.32 58 E5_Dd KnownBoundary 0 0.00 3.35 1.80 1.56 0.00 0.00 2.21 5.01 1.53 5.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.66 0.00 2.62 0.00 0.00 11.87 59 ER5f ExonRegion 0 0.26 1.29 0.00 1.36 0.00 0.00 0.76 0.00 0.00 1.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.35 0.00 0.90 0.00 0.06 4.27 60 E5e_E6b KnownJunction 0 0.00 0.00 0.00 1.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61 ER6a ExonRegion 0 0.00 1.85 3.45 1.21 0.12 0.25 2.65 1.77 2.11 1.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.32 0.07 4.16 1.45 0.00 0.67 62 E6_Ab KnownBoundary 0 0.00 2.83 6.98 3.80 0.00 0.00 5.83 4.85 3.30 4.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.83 0.00 9.72 3.15 0.00 3.41 63 ER6b ExonRegion 0 5.02 6.74 19.05 5.18 3.48 1.86 4.85 10.91 18.94 12.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.37 4.67 5.22 0.56 0.56 1.40 64 E6a_E7a KnownJunction 0 0.00 3.29 16.20 1.70 0.00 2.27 9.01 4.27 10.24 8.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.10 4.80 2.36 0.00 3.12 0.00 65 ER7a ExonRegion 0 4.72 2.35 9.59 5.35 0.85 1.24 1.73 5.65 10.11 6.77 0.62 0.00 0.00 0.79 0.00 0.00 0.00 9.15 4.54 10.85 0.00 2.36 1.87 66 ER7b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 1.83 0.00 0.00 0.00 1.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.62 0.00 0.00 0.00 0.00 0.00