Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 IL11RA Gene 0 82.66 26.44 81.70 52.24 49.07 55.25 23.61 129.72 96.06 104.38 8.44 3.01 4.12 8.36 10.48 13.04 7.42 67.39 32.51 45.53 116.83 32.88 69.25 2 441545 Transcript 0 22.97 0.02 3.06 2.30 2.48 11.36 3.96 3.21 3.85 5.06 0.14 0.00 0.00 1.29 0.00 0.00 0.00 2.13 1.66 2.15 35.35 7.82 49.10 3 378817 Transcript 0 103.75 16.92 102.17 57.43 58.81 55.10 24.83 121.47 69.27 86.05 11.22 3.35 7.22 8.26 11.89 20.56 7.43 85.41 34.65 33.47 66.06 19.59 52.56 4 318041 Transcript 0 2.12 0.00 0.00 0.00 2.68 3.67 2.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 478308 Transcript 0 42.43 21.85 39.32 30.46 45.88 32.67 19.11 61.53 69.51 76.38 6.85 2.35 1.68 5.46 7.21 13.78 5.30 60.58 36.42 40.73 27.18 10.95 25.09 6 478802 Transcript 0 3.88 1.69 1.02 0.68 0.89 2.45 1.77 4.03 3.71 2.29 0.64 0.00 0.00 0.00 0.00 0.00 0.55 1.23 1.59 2.48 9.92 1.39 8.32 7 466082 Transcript 0 32.69 12.40 20.68 12.45 14.53 28.81 11.10 23.90 8.14 16.33 4.33 0.00 0.00 1.35 6.88 5.48 4.29 13.01 7.69 6.38 19.52 1.79 10.32 8 IG43 Intergenic 0 39.59 27.96 35.31 23.43 33.98 40.19 28.95 92.96 83.30 86.81 3.87 3.23 4.52 6.96 8.87 9.55 9.04 47.86 26.52 37.55 30.52 12.51 23.52 9 IG43_AR1 ActiveIntergenicRegion 0 41.10 29.13 36.99 24.51 35.58 41.67 30.13 97.09 87.33 90.83 4.08 3.32 4.77 7.20 9.24 10.07 9.19 50.19 27.46 39.27 32.00 13.07 24.50 10 IG43_AR2 ActiveIntergenicRegion 0 15.21 8.52 6.13 5.28 5.77 16.56 10.22 22.09 12.00 16.52 0.00 2.44 0.00 3.25 3.26 0.00 7.94 6.18 12.54 7.05 5.10 3.06 8.08 11 ER1a ExonRegion 0 12.74 0.04 1.18 1.20 4.97 12.61 5.67 1.62 2.55 1.83 0.28 0.00 0.00 2.59 0.00 0.00 0.00 1.70 3.32 4.30 23.39 3.70 31.10 12 E1_Da NovelBoundary 0 10.37 12.70 11.65 19.81 23.09 7.04 27.20 34.34 32.55 45.53 0.00 0.00 0.00 2.47 0.00 3.33 14.03 42.49 4.61 10.99 11.68 0.00 8.71 13 E1a_E3b KnownJunction 0 33.19 0.00 4.94 3.40 0.00 10.11 2.25 4.81 5.15 8.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 47.32 11.94 67.10 14 I1 Intron 0 23.10 13.91 40.65 31.38 33.19 34.51 25.66 68.28 59.17 66.15 5.96 3.38 2.49 4.88 5.85 10.22 8.07 61.92 29.69 38.76 26.62 11.81 22.90 15 I1_AR1 ActiveIntronRegion 0 25.46 14.30 44.63 34.40 36.33 36.46 27.69 80.31 66.07 74.08 6.75 3.76 3.05 5.36 6.44 11.01 9.02 69.96 30.94 44.51 30.24 13.03 25.65 16 I1_AR2 ActiveIntronRegion 0 15.21 12.68 27.20 21.23 22.64 28.04 18.92 27.54 35.88 39.36 3.27 2.08 0.61 3.27 3.89 7.56 4.89 34.74 25.59 19.32 14.37 7.74 13.61 17 E2_Aa NovelBoundary 0 18.30 9.08 20.08 3.53 20.12 47.98 9.89 37.38 29.11 38.82 6.63 0.00 0.00 2.47 0.00 10.08 7.39 41.83 0.00 5.31 30.39 0.00 33.04 18 E2_Ab NovelBoundary 0 39.34 2.89 28.74 16.22 10.78 12.32 11.61 44.28 28.41 47.89 2.26 7.65 0.00 5.36 4.45 3.33 0.00 35.28 25.13 8.12 38.05 17.15 26.46 19 ER2a ExonRegion 0 3.44 3.30 0.61 0.00 2.34 1.15 0.00 0.00 0.00 0.00 0.00 1.62 0.00 0.00 0.00 0.00 0.00 3.23 1.99 2.13 11.29 13.28 2.94 20 ER2b ExonRegion 0 16.38 3.25 4.45 0.00 6.85 6.40 6.92 1.70 1.97 0.50 0.10 6.15 0.00 2.05 0.00 0.00 0.29 3.11 16.71 5.41 29.11 15.02 5.10 21 E2_Da NovelBoundary 0 16.97 15.59 38.97 12.72 28.10 28.56 15.81 55.04 66.15 56.71 7.26 0.00 6.66 2.41 10.26 12.73 4.39 47.09 35.11 43.72 32.93 5.63 11.78 22 E2a_E3b KnownJunction 0 2.74 0.00 7.60 0.00 0.00 0.00 1.63 2.55 1.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.37 0.00 0.00 23 I2 Intron 0 25.23 12.77 35.64 22.82 21.18 32.04 14.93 61.17 58.36 70.92 4.31 4.03 4.27 5.18 6.97 11.63 4.96 53.87 27.24 38.14 29.26 7.96 23.65 24 I2_AR1 ActiveIntronRegion 0 17.82 10.13 34.07 18.44 19.11 28.03 11.73 57.91 54.83 68.52 4.39 4.47 4.12 4.73 6.65 11.36 4.94 49.39 29.10 35.34 30.01 7.96 22.93 25 I2_SR1 SilentIntronRegion 0 17.87 5.87 8.92 14.61 8.47 11.51 4.78 17.67 26.35 19.56 4.51 0.00 2.87 0.00 0.00 0.50 0.00 15.40 10.09 16.90 9.55 2.66 8.65 26 I2_AR2 ActiveIntronRegion 0 78.96 26.38 30.67 40.74 20.96 60.26 26.59 65.39 68.10 74.36 8.91 0.00 10.42 3.74 5.56 8.50 4.31 65.24 25.66 59.10 21.61 9.38 31.90 27 I2_SR2 SilentIntronRegion 0 109.08 41.14 58.35 61.96 27.17 79.28 38.80 112.35 104.41 119.28 5.06 0.00 7.58 7.87 20.53 14.63 9.90 114.42 32.10 68.08 27.29 17.31 46.08 28 I2_AR3 ActiveIntronRegion 0 55.66 25.86 49.95 46.27 37.24 51.09 33.54 84.79 81.23 90.11 2.45 3.07 3.51 9.24 9.32 15.81 5.54 82.32 16.90 52.56 29.42 7.51 26.63 29 E3_Aa NovelBoundary 0 33.12 12.63 34.09 10.79 10.87 27.26 8.04 64.03 61.83 58.56 9.53 0.00 0.00 0.00 0.00 10.77 22.16 35.24 19.95 32.41 19.46 2.76 11.87 30 E3_Ab NovelBoundary 0 29.49 15.85 32.46 13.88 33.28 18.40 13.03 44.89 34.52 60.76 0.00 0.00 0.00 2.24 4.45 4.19 4.02 16.00 20.89 17.07 5.44 10.35 12.98 31 ER3a ExonRegion 0 7.76 3.39 2.04 1.36 1.78 4.89 3.53 8.07 7.41 4.59 1.29 0.00 0.00 0.00 0.00 0.00 1.10 2.46 3.19 4.96 19.83 2.78 16.64 32 ER3b ExonRegion 0 48.98 53.20 31.87 19.55 18.00 35.25 15.61 58.58 67.37 74.83 8.10 1.84 6.49 10.14 9.82 10.03 8.00 44.42 26.93 39.22 73.37 23.93 45.18 33 E3_Da KnownBoundary 0 63.72 56.31 40.00 36.83 36.84 32.31 20.23 76.93 79.40 65.57 7.48 0.00 6.82 16.95 4.45 12.73 4.68 43.11 22.31 41.80 45.72 2.82 22.96 34 E3a_E3c KnownJunction 0 51.64 15.59 43.88 6.89 8.66 26.75 7.68 34.75 49.88 31.89 0.00 0.00 0.00 2.30 4.45 0.00 8.70 26.57 13.08 8.56 104.09 16.41 39.27 35 ER3c ExonRegion 0 42.43 21.85 39.32 30.46 45.88 32.67 19.11 61.53 69.51 76.38 6.85 2.35 1.68 5.46 7.21 13.78 5.30 60.58 36.42 40.73 27.18 10.95 25.09 36 E3_Ac KnownBoundary 0 35.12 20.19 51.27 38.49 30.56 36.91 4.20 79.31 73.12 86.17 2.53 17.71 0.00 7.53 4.57 11.45 22.25 53.35 17.69 42.76 37.87 10.16 23.39 37 ER3d ExonRegion 0 77.46 16.91 72.24 40.09 37.19 31.79 14.48 107.08 91.48 98.10 6.60 3.90 0.31 8.82 6.82 2.67 14.74 67.57 34.35 35.21 157.09 35.87 85.26 38 E3_Db NovelBoundary 0 12.89 8.49 29.57 13.09 22.75 23.74 15.32 21.81 28.15 39.03 0.00 0.00 0.00 0.00 0.00 0.00 4.77 33.20 17.51 28.44 16.68 7.65 27.49 39 E3b_E4a KnownJunction 0 119.06 21.11 55.00 33.46 30.39 43.38 16.96 138.99 95.57 93.32 10.48 0.00 0.00 2.18 14.59 4.36 0.00 42.78 43.48 29.53 105.76 40.84 94.58 40 I3 Intron 0 16.44 7.90 13.24 14.20 17.32 10.92 6.51 19.34 21.92 20.80 1.00 0.92 1.00 4.11 3.89 9.23 3.42 24.01 14.84 14.32 14.25 3.24 12.16 41 I3_AR1 ActiveIntronRegion 0 21.17 10.17 17.04 18.28 22.30 14.06 8.39 24.90 28.22 26.78 1.29 1.19 1.29 5.29 5.01 11.89 4.40 30.92 19.11 18.44 18.34 4.17 15.66 42 E4_Aa NovelBoundary 0 55.86 21.51 51.45 35.09 15.62 9.65 18.50 59.31 39.81 56.95 0.00 0.00 0.00 0.00 4.45 11.71 3.55 41.37 13.27 50.11 44.17 0.00 8.19 43 ER4a ExonRegion 0 111.17 22.91 90.44 52.72 49.24 46.96 18.83 173.06 127.53 125.35 9.08 2.22 6.98 9.49 13.69 19.03 11.27 88.58 32.63 57.45 121.15 37.83 103.10 44 E4_Da KnownBoundary 0 123.50 14.80 153.22 88.90 76.32 87.90 33.52 191.45 145.25 145.81 12.53 0.00 0.00 2.47 14.46 15.89 13.46 107.32 64.28 65.58 151.17 37.47 86.90 45 ER4b ExonRegion 0 89.81 19.32 107.71 70.36 62.76 63.12 37.09 152.06 113.43 125.08 12.50 0.00 1.81 11.52 10.98 14.96 9.45 88.42 34.06 47.34 153.78 43.23 73.32 46 E4_Db NovelBoundary 0 54.60 2.50 43.64 18.71 30.90 22.54 15.77 42.43 25.26 26.67 0.00 0.00 0.00 0.00 4.45 4.36 0.00 54.51 17.41 60.21 34.10 0.00 12.38 47 E4b_E5a KnownJunction 0 102.68 24.54 75.75 62.63 26.66 59.74 21.37 173.33 118.20 111.05 9.00 0.00 6.33 7.06 9.64 19.48 7.85 70.26 20.89 44.61 130.84 43.11 53.69 48 I4 Intron 0 29.98 3.29 13.30 9.04 16.25 14.10 8.04 12.51 14.15 13.84 0.00 0.00 0.00 1.08 2.00 4.81 4.01 26.76 5.16 16.38 19.61 2.53 4.75 49 I4_AR1 ActiveIntronRegion 0 17.76 0.20 9.06 6.42 7.24 7.87 7.81 8.60 10.45 7.47 0.00 0.00 0.00 0.00 0.35 4.06 6.36 10.19 1.55 13.91 13.28 1.73 0.00 50 I4_SR1 SilentIntronRegion 0 36.72 4.90 15.71 10.56 21.08 17.50 8.34 14.74 16.32 17.31 0.00 0.00 0.00 1.64 2.87 5.30 2.94 35.60 7.06 17.97 23.21 2.99 7.22 51 E5_Aa NovelBoundary 0 22.60 8.49 66.14 23.17 3.40 18.00 11.75 59.06 33.71 32.66 0.00 0.00 0.00 2.47 4.45 3.76 4.77 38.22 7.91 34.71 34.22 13.04 18.35 52 ER5a ExonRegion 0 88.44 30.65 87.10 66.94 66.77 85.40 19.06 175.58 122.86 126.38 5.25 0.41 5.97 8.64 8.84 17.69 8.33 77.28 34.74 55.02 158.01 41.25 97.75 53 E5_Da NovelBoundary 0 115.13 19.54 104.76 69.46 47.03 76.43 18.59 161.09 148.29 137.16 6.95 5.40 13.31 4.94 0.00 26.83 7.11 65.25 53.74 67.82 178.23 58.54 74.78 54 E5a_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 55 E5b_E6a KnownJunction 0 93.79 12.30 105.79 43.82 27.16 47.59 7.82 135.50 112.85 97.24 2.68 0.00 0.00 17.66 9.15 39.65 0.00 45.18 42.92 34.64 134.00 25.23 88.09 56 ER5b ExonRegion 0 73.26 12.07 102.06 55.75 34.70 51.05 13.45 153.61 131.52 122.72 3.49 3.91 5.45 9.69 8.05 28.57 2.98 56.68 41.20 49.83 154.76 38.85 77.58 57 ER6a ExonRegion 0 72.49 13.56 113.45 51.34 35.01 52.26 17.65 171.55 118.26 131.22 3.87 0.00 0.00 17.87 10.40 27.00 6.60 62.21 52.56 34.04 147.46 32.47 101.31 58 E6a_E7a KnownJunction 0 124.76 31.84 98.81 54.44 38.79 63.71 27.43 177.52 90.54 128.10 2.42 6.30 6.49 11.77 30.41 19.48 8.70 109.40 68.43 32.53 171.62 67.23 150.07 59 ER6b ExonRegion 0 83.85 21.40 115.13 57.31 37.08 48.55 19.29 181.16 118.75 133.15 2.76 2.89 2.01 15.85 14.64 25.48 9.43 82.80 58.09 32.12 169.06 47.92 127.11 60 ER7a ExonRegion 0 80.69 25.85 94.00 60.14 33.30 45.45 18.07 185.68 136.56 132.72 6.85 1.25 2.03 11.18 13.22 13.94 8.47 82.41 42.95 49.44 182.16 52.32 100.45 61 E7_Da KnownBoundary 0 156.10 23.94 108.36 48.21 63.33 50.20 24.07 161.46 142.04 145.16 6.63 0.00 0.00 4.94 4.45 0.00 3.83 50.57 38.68 66.86 159.88 58.05 90.31 62 ER7b ExonRegion 0 103.04 19.61 94.84 42.78 46.90 42.02 23.81 170.01 133.29 136.22 3.01 0.00 5.09 5.75 12.77 11.12 8.87 85.02 32.95 52.01 175.54 40.63 85.12 63 E7_Db NovelBoundary 0 35.27 8.55 26.55 11.59 11.88 24.19 5.96 29.49 10.82 24.42 0.00 0.00 0.00 0.00 0.00 3.93 0.00 15.63 40.28 27.42 8.59 4.96 41.32 64 E7b_E8a KnownJunction 0 150.47 14.27 98.70 62.86 42.78 61.84 23.80 193.66 179.74 135.22 4.58 0.00 6.33 5.47 0.00 15.89 23.19 111.47 4.14 55.74 151.97 37.66 108.50 65 I7 Intron 0 13.36 5.24 16.23 12.82 8.22 6.09 9.24 17.54 8.26 20.58 2.09 0.51 1.56 1.69 2.21 3.21 2.47 17.70 9.26 12.72 10.62 5.54 12.93 66 I7_SR1 SilentIntronRegion 0 10.56 4.71 16.26 10.16 9.67 5.59 10.41 17.21 9.17 20.94 2.83 0.37 0.40 1.67 2.21 1.45 3.59 16.68 7.70 12.69 7.72 5.29 14.97 67 I7_AR2 ActiveIntronRegion 0 21.24 6.99 17.79 20.37 5.37 7.88 7.21 19.92 6.86 21.55 0.55 0.88 4.43 1.92 2.44 7.65 0.00 21.58 13.69 14.02 18.31 6.57 9.26 68 E8_Aa NovelBoundary 0 28.52 2.89 32.05 23.34 10.70 10.28 6.54 27.48 10.10 31.89 2.05 0.00 0.00 2.35 4.82 0.00 0.00 30.51 4.05 23.39 8.59 10.47 19.38 69 ER8a ExonRegion 0 129.40 21.56 89.11 62.39 46.14 59.04 28.27 146.01 117.03 119.26 5.26 2.22 0.23 11.42 13.60 9.35 8.57 86.07 32.46 65.46 175.07 45.11 78.84 70 E8a_E9a KnownJunction 0 128.62 12.89 82.64 62.93 49.32 38.95 16.43 139.86 107.84 109.11 14.48 0.00 0.00 15.36 18.54 12.48 9.54 93.73 7.72 54.97 160.25 25.23 79.05 71 ER9a ExonRegion 0 92.22 28.15 74.45 38.79 39.24 62.32 25.25 117.22 77.21 95.95 10.59 7.17 5.61 10.96 13.03 7.34 7.43 61.55 18.32 44.46 160.82 24.99 59.15 72 E9a_E10a KnownJunction 0 181.07 36.51 107.09 45.75 70.71 88.81 38.29 160.80 114.84 147.82 17.95 6.00 5.84 9.48 4.45 7.95 18.23 87.34 29.55 44.04 191.26 20.27 86.64 73 ER9b ExonRegion 0 125.33 29.34 100.74 39.62 64.41 84.88 37.35 150.38 104.72 127.55 18.91 5.26 6.70 16.47 11.19 3.18 16.03 83.81 22.98 36.78 204.16 22.03 73.21 74 ER10a ExonRegion 0 115.00 31.28 135.97 66.72 71.67 66.96 31.09 188.52 129.64 154.83 12.71 3.17 7.97 10.45 11.99 20.11 9.46 121.15 29.36 68.87 189.94 44.43 107.63 75 E10a_E11a KnownJunction 0 108.46 35.52 188.25 96.62 47.45 116.52 21.07 240.45 156.57 165.55 17.27 6.15 6.01 16.19 0.00 44.52 4.77 123.90 50.92 77.72 206.52 37.47 114.73 76 ER11a ExonRegion 0 82.50 37.30 149.57 68.19 54.54 83.47 26.44 207.65 146.16 178.63 18.77 6.87 13.01 11.72 13.28 19.09 13.31 105.36 49.88 57.51 225.53 42.34 100.72 77 E11_Da KnownBoundary 0 67.57 27.82 104.11 34.36 19.27 19.02 7.02 127.45 54.60 84.02 5.26 0.00 0.00 0.00 17.80 8.20 8.79 84.94 23.72 38.29 83.09 27.68 35.08 78 E11a_E11b KnownJunction 0 0.00 0.00 8.49 5.89 0.00 5.28 0.00 4.19 1.27 9.16 2.63 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 79 E11a_E11c KnownJunction 0 49.19 20.26 56.30 23.27 41.00 24.64 13.16 95.17 64.26 76.15 7.63 0.00 0.00 2.35 0.00 4.36 9.26 45.64 16.00 24.42 114.23 45.93 89.20 80 ER11b ExonRegion 0 103.75 16.92 102.17 57.43 58.81 55.10 24.83 121.47 69.27 86.05 11.22 3.35 7.22 8.26 11.89 20.56 7.43 85.41 34.65 33.47 66.06 19.59 52.56 81 E11_Ab NovelBoundary 0 100.09 27.17 66.82 51.68 176.49 140.09 63.51 55.49 23.29 26.43 12.37 6.30 13.31 4.94 13.35 4.36 4.77 32.29 29.65 20.96 35.77 5.69 16.22 82 E11_Db NovelBoundary 0 138.39 43.74 37.85 43.62 101.10 87.62 45.53 54.09 33.74 34.25 7.16 0.00 0.00 2.47 21.01 11.88 4.77 45.85 17.98 15.53 26.50 6.25 37.90 83 ER11c ExonRegion 0 53.05 18.44 24.02 23.35 49.06 30.93 13.59 36.30 13.17 18.04 6.44 2.89 5.63 3.14 17.79 2.97 1.32 32.64 15.08 11.06 17.78 0.42 17.03 84 ER11d ExonRegion 0 65.37 24.81 32.87 19.00 29.05 52.34 22.20 43.61 15.00 23.50 6.02 0.00 0.00 2.69 13.76 10.95 8.58 26.03 15.38 12.77 39.04 3.57 20.64 85 E11_Ac KnownBoundary 0 60.53 21.51 43.43 32.43 39.56 65.59 29.41 67.98 20.20 28.10 4.90 6.45 0.00 2.47 8.90 16.49 13.00 18.49 20.52 18.02 39.29 2.76 19.89 86 ER11e ExonRegion 0 81.92 43.25 114.83 63.54 55.51 85.03 28.93 176.62 108.16 123.47 12.49 8.39 2.40 9.43 11.50 13.34 7.81 72.58 32.24 55.60 134.67 40.22 122.09 87 E11_Dc NovelBoundary 0 6.45 3.35 7.01 9.12 23.94 11.07 0.00 13.06 6.68 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.06 17.88 11.19 16.68 3.12 6.49 88 E11c_E12a KnownJunction 0 99.05 61.17 135.57 108.74 91.17 81.09 43.63 217.61 157.06 155.99 13.58 6.30 0.00 9.77 17.80 10.51 9.54 59.32 44.42 52.86 164.70 32.58 131.46 89 ER12a ExonRegion 0 112.15 37.38 113.16 98.82 103.06 102.79 38.20 194.63 140.03 155.52 11.62 2.61 1.08 8.86 13.92 14.30 7.47 62.39 44.58 63.62 144.25 53.54 108.96 90 E12_Da KnownBoundary 0 167.36 58.34 154.73 136.81 127.93 170.13 54.72 242.75 168.20 206.97 15.11 0.00 6.49 12.36 9.39 24.27 17.02 73.70 64.85 40.59 122.20 55.42 102.52 91 ER12b ExonRegion 0 71.42 33.77 65.65 59.21 34.97 49.79 23.42 121.91 87.29 79.06 6.43 3.09 6.01 4.80 7.66 7.87 3.89 27.96 26.41 37.53 77.85 40.17 50.05 92 ER12c ExonRegion 0 2.12 0.00 0.00 0.00 2.68 3.67 2.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00