Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP11-546N22.2 Gene 0 19.28 16.00 4.18 8.56 14.76 5.45 7.38 9.26 6.27 7.31 10.30 16.46 22.37 17.76 11.03 15.84 18.00 8.82 10.26 17.79 7.64 5.81 8.37 2 436015 Transcript 0 15.44 8.97 3.06 6.94 10.90 7.20 4.83 7.01 5.14 5.51 8.48 7.29 12.96 10.57 7.51 10.96 9.90 6.13 5.77 8.63 10.13 4.43 7.28 3 443149 Transcript 0 6.63 4.03 1.16 2.26 5.94 2.91 2.30 2.56 2.94 2.43 4.67 11.70 10.15 7.46 3.88 6.67 8.16 4.59 6.83 7.13 1.38 2.86 4.63 4 ER1a ExonRegion 0 1.08 0.00 0.65 2.30 1.77 3.37 1.12 3.46 1.32 2.28 3.14 0.46 13.36 6.84 1.89 4.06 8.31 0.48 2.90 2.47 6.16 4.61 1.34 5 E1_Da NovelBoundary 0 16.97 2.83 1.39 1.63 20.20 9.54 4.50 0.00 1.74 1.21 2.42 5.25 7.63 0.00 0.00 4.19 7.85 3.73 0.00 0.00 3.15 0.00 0.00 6 E1a_E2a KnownJunction 0 7.56 0.00 3.37 3.73 4.33 11.53 1.68 6.04 2.95 6.02 8.05 0.00 6.82 9.36 5.19 6.58 21.79 3.77 0.00 6.01 13.96 2.33 0.00 7 I1 Intron 0 27.11 32.39 11.54 16.96 22.55 5.75 12.04 19.64 10.38 14.97 4.57 13.70 28.02 6.80 18.08 9.64 12.31 7.12 11.06 16.12 1.74 4.17 4.67 8 I1_SR1 SilentIntronRegion 1 32.63 32.55 12.45 11.44 19.83 5.43 12.16 16.79 9.28 9.62 5.73 10.27 16.52 4.56 23.67 13.22 17.62 11.99 12.28 6.31 0.65 3.71 6.10 9 I1_SR2 SilentIntronRegion 1 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 I1_AR2 ActiveIntronRegion 1 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 I1_SR3 SilentIntronRegion 1 24.08 31.03 11.46 14.26 25.26 5.92 14.20 14.11 9.65 16.63 5.40 12.52 32.39 7.14 21.49 10.07 16.23 8.10 12.09 16.96 2.26 5.33 4.46 12 I1_AR3 ActiveIntronRegion 0 23.97 37.25 10.55 21.23 17.00 6.25 13.07 30.50 12.63 15.06 3.08 19.17 32.68 7.77 16.25 6.88 9.30 3.72 6.64 21.16 0.78 2.87 4.67 13 I1_AR4 ActiveIntronRegion 0 29.13 30.83 13.78 16.62 23.93 6.17 9.32 23.53 10.86 14.20 3.56 13.17 23.71 5.95 13.89 7.73 7.33 6.54 9.50 14.17 0.98 3.96 4.47 14 I1_SR4 SilentIntronRegion 0 45.54 37.46 9.31 28.61 23.20 3.47 8.39 19.59 10.79 13.74 4.98 13.57 20.39 6.65 14.61 17.34 9.61 9.18 17.20 13.23 2.66 2.56 6.31 15 I1_AR5 ActiveIntronRegion 0 17.46 28.78 6.08 15.55 9.30 4.74 8.19 13.24 6.10 11.68 7.95 12.34 16.47 9.20 13.82 10.07 14.11 4.46 19.55 19.41 6.53 2.06 3.19 16 E2_Aa NovelBoundary 0 35.86 59.27 6.86 34.06 11.80 5.39 10.20 17.87 12.44 16.20 7.26 18.31 26.46 7.12 16.19 15.30 13.28 9.12 8.28 26.85 5.62 0.00 4.35 17 ER2a ExonRegion 0 44.74 41.72 11.94 20.05 30.74 7.82 14.63 22.93 11.11 17.94 14.44 28.41 37.91 27.39 18.85 29.53 25.12 15.14 15.35 32.27 15.85 9.39 8.94 18 E2_Da NovelBoundary 0 18.52 25.52 8.25 20.21 4.07 0.00 14.71 29.04 7.55 8.95 11.95 26.56 69.96 12.13 8.90 16.06 3.55 4.64 4.80 22.24 5.93 2.88 0.00 19 E2a_E3b KnownJunction 0 13.85 8.22 0.00 6.53 15.03 16.41 8.17 6.37 7.61 5.75 4.58 12.60 14.61 4.94 10.26 16.15 0.00 10.65 4.61 5.62 5.56 0.00 3.67 20 I2 Intron 0 22.59 42.00 10.58 11.84 14.43 4.20 10.56 14.55 9.52 10.65 6.48 17.93 25.91 9.94 14.91 13.97 14.55 11.52 11.37 14.57 4.17 3.49 5.78 21 I2_AR1 ActiveIntronRegion 0 16.63 70.76 6.39 14.75 18.24 4.53 11.49 21.15 8.16 13.73 6.33 23.14 38.80 11.44 14.86 6.75 9.23 3.95 8.40 11.02 0.48 2.27 2.95 22 I2_SR1 SilentIntronRegion 0 26.03 40.85 12.94 12.60 14.17 4.42 10.73 14.51 11.05 11.16 6.84 18.11 26.18 9.45 16.29 16.19 15.90 13.98 13.20 16.18 5.24 4.01 6.30 23 I2_AR2 ActiveIntronRegion 0 9.69 6.65 1.79 2.66 10.50 2.40 8.22 5.05 1.81 2.79 4.42 9.16 5.05 10.96 6.29 10.69 14.01 7.20 4.17 9.74 2.88 2.04 6.72 24 E3_Aa NovelBoundary 0 3.78 8.95 5.32 1.37 15.62 4.54 9.76 5.22 5.61 4.51 4.90 0.00 0.00 4.89 9.77 14.78 13.09 14.72 4.14 6.20 2.41 0.00 0.00 25 E3_Ab NovelBoundary 0 6.74 11.91 6.98 6.13 3.82 2.67 6.36 4.68 1.59 5.21 0.00 0.00 13.31 2.71 0.00 0.00 7.39 11.61 0.00 2.43 8.83 0.00 3.93 26 ER3a ExonRegion 0 2.65 2.03 1.23 2.39 3.34 2.75 1.99 1.30 2.16 1.15 1.93 12.99 5.86 1.22 1.45 5.20 6.60 2.77 1.59 1.06 1.10 1.04 1.47 27 ER3b ExonRegion 0 18.20 10.68 1.16 9.87 20.59 13.24 13.08 1.75 7.45 3.78 16.51 23.62 30.99 17.37 14.51 21.39 26.87 15.71 17.66 19.80 5.32 4.89 15.51 28 E3_Da NovelBoundary 0 10.30 21.31 4.76 1.63 17.32 21.35 2.25 8.79 3.04 5.40 2.42 11.70 26.30 17.07 4.45 16.66 16.92 18.41 4.80 8.44 11.06 2.76 15.88 29 E3a_E4a KnownJunction 0 6.00 0.00 0.00 0.00 4.33 2.38 0.00 0.00 1.22 1.18 2.63 6.15 6.82 2.47 0.00 3.33 0.00 3.61 9.41 2.88 0.00 2.82 4.10 30 E3a_E5a KnownJunction 0 10.67 0.00 1.54 5.26 8.66 2.90 1.85 0.00 4.75 0.00 14.16 0.00 0.00 9.06 5.07 0.00 0.00 4.15 9.04 3.26 8.53 6.25 20.66 31 Ix Intron 0 4.53 9.34 2.89 7.24 7.84 2.03 6.71 3.88 3.79 2.30 2.91 10.29 17.68 8.27 7.99 4.24 9.41 3.65 5.30 9.60 1.05 2.31 2.79 32 Ix_SR1 SilentIntronRegion 0 4.54 9.37 2.90 7.26 7.86 2.04 6.73 3.89 3.80 2.31 2.92 10.31 17.73 8.29 8.01 4.25 9.44 3.66 5.31 9.63 1.05 2.32 2.80 33 Ix Intron 0 8.56 9.03 3.04 5.77 8.89 3.21 7.52 5.32 6.44 7.45 4.65 15.23 24.85 10.51 7.91 7.50 10.04 6.33 7.32 12.38 3.91 3.70 3.46 34 Ix_SR1 SilentIntronRegion 0 7.86 9.49 3.14 6.17 8.82 3.21 7.74 4.65 5.75 6.93 4.33 16.61 26.78 9.15 7.51 6.51 8.22 4.94 7.20 11.14 2.63 3.60 2.76 35 Ix_AR1 ActiveIntronRegion 0 11.99 6.85 2.58 3.83 9.32 3.24 6.50 8.61 9.82 10.05 6.24 8.60 15.62 17.20 9.90 12.36 18.97 13.12 7.94 18.53 10.16 4.21 6.89 36 E4_Aa NovelBoundary 0 10.45 3.35 0.00 3.70 7.98 0.00 5.61 8.87 3.53 4.03 14.79 12.15 6.66 9.71 0.00 7.60 3.55 6.67 0.00 26.53 0.00 3.12 16.90 37 ER4a ExonRegion 0 11.24 10.06 2.26 4.41 10.14 3.60 4.91 6.37 5.45 4.97 9.45 15.95 17.77 18.69 10.18 11.47 17.86 7.39 9.48 17.44 3.04 4.74 8.32 38 E4_Da NovelBoundary 0 26.82 16.31 1.77 7.42 11.46 9.54 21.60 1.97 6.02 9.51 10.37 7.05 20.45 16.13 15.82 37.68 24.40 2.20 21.46 14.13 8.40 2.88 3.50 39 Ix Intron 0 12.80 10.69 3.12 4.00 8.44 3.62 6.09 6.77 7.99 6.07 9.15 20.99 23.53 17.48 11.35 15.24 18.22 12.68 11.29 11.47 8.97 4.66 12.35 40 Ix_SR1 SilentIntronRegion 0 12.83 10.71 3.13 4.01 8.46 3.62 6.10 6.79 8.01 6.08 9.17 21.04 23.60 17.51 11.38 15.28 18.27 12.71 11.32 11.50 8.99 4.67 12.38 41 Ix Intron 0 6.26 6.51 1.36 5.50 7.91 8.13 6.52 6.35 7.26 6.32 10.48 12.49 37.11 26.90 9.42 10.98 26.84 13.13 10.20 19.40 8.14 3.59 8.68 42 Ix_AR1 ActiveIntronRegion 0 6.29 6.54 1.36 5.53 7.95 8.17 6.56 6.37 7.29 6.35 10.53 12.55 37.29 27.03 9.46 11.04 26.97 13.19 10.25 19.49 8.18 3.61 8.72 43 Ix Intron 0 12.44 5.84 3.61 3.07 8.84 4.47 3.56 7.67 6.19 5.51 7.10 10.26 16.94 12.89 12.94 11.79 13.40 13.41 12.93 13.92 6.09 3.67 5.21 44 Ix_AR3 ActiveIntronRegion 0 8.67 9.31 4.16 4.66 11.36 11.56 5.01 10.24 13.50 7.89 11.20 22.45 31.62 27.58 12.62 14.69 23.22 27.49 21.35 24.44 11.96 8.40 5.56 45 Ix_SR2 SilentIntronRegion 0 10.72 5.40 2.86 3.04 10.70 5.99 4.55 8.42 8.90 5.39 10.33 10.77 21.05 17.78 11.45 16.81 18.74 16.67 13.46 15.95 9.30 4.60 8.53 46 Ix_AR2 ActiveIntronRegion 0 25.17 10.09 3.52 3.45 7.09 3.30 3.50 8.62 7.03 6.80 9.11 10.82 19.70 21.86 25.01 15.48 16.62 22.54 21.04 24.51 6.56 6.30 8.34 47 Ix_AR1 ActiveIntronRegion 0 18.73 4.70 2.98 2.80 18.15 1.16 6.01 7.22 1.52 1.89 15.62 10.18 42.34 18.26 14.74 11.00 15.66 4.57 4.99 20.73 1.76 0.00 3.02 48 Ix_SR1 SilentIntronRegion 0 11.11 5.01 3.92 2.88 7.74 3.49 2.91 6.97 4.39 5.27 4.66 8.82 12.35 7.67 11.47 8.76 9.55 9.48 10.83 9.98 4.25 2.51 3.30 49 ER5a ExonRegion 0 14.74 3.86 0.84 3.78 4.88 1.17 1.51 3.28 3.07 1.09 6.50 2.27 5.04 5.83 3.77 9.44 4.21 2.61 2.71 2.15 10.72 4.01 9.10