Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP11-509J21.3 Gene 0 12.66 12.17 1.39 20.26 8.64 26.47 6.54 12.48 23.25 23.05 29.19 28.40 92.54 64.21 37.33 55.32 75.24 10.38 3.63 8.89 11.72 2.57 2.23 2 427722 Transcript 0 16.54 11.76 3.51 24.09 7.98 29.22 6.26 14.57 21.86 22.81 24.72 36.62 97.60 65.59 47.20 57.88 79.11 10.92 3.17 9.37 22.70 1.92 1.85 3 IG31 Intergenic 0 2.10 5.75 0.31 5.15 3.88 7.80 3.97 4.73 7.25 6.94 5.88 12.15 43.03 18.82 5.33 12.57 26.08 2.38 2.00 5.50 1.97 0.55 0.78 4 IG31_AR1 ActiveIntergenicRegion 0 2.67 7.33 1.24 4.41 3.37 11.12 8.34 12.06 8.91 6.81 2.31 12.13 52.34 18.35 7.74 23.23 34.88 5.50 3.62 5.91 1.74 0.00 0.00 5 IG31_SR1 SilentIntergenicRegion 0 0.46 9.28 3.12 6.39 0.70 8.92 1.16 13.47 10.03 14.77 4.13 5.69 52.55 20.85 1.43 12.82 34.41 4.10 0.44 5.54 1.21 1.14 0.00 6 IG31_AR2 ActiveIntergenicRegion 0 3.15 5.17 0.08 6.14 4.43 4.43 4.57 4.46 5.55 5.55 3.64 5.22 35.37 14.50 4.69 13.98 24.35 2.04 2.56 5.20 1.76 0.41 1.31 7 IG31_SR2 SilentIntergenicRegion 0 1.10 6.56 0.27 2.90 2.41 5.79 2.47 2.63 5.18 5.38 6.21 5.30 11.07 13.76 2.11 9.23 22.29 2.82 0.95 6.59 2.63 0.00 0.44 8 IG31_AR3 ActiveIntergenicRegion 0 2.31 4.90 0.13 6.52 5.27 12.04 4.73 5.26 10.21 8.81 8.02 25.21 78.60 27.22 9.14 13.44 29.37 1.68 2.55 4.65 1.61 1.22 0.86 9 ER1a ExonRegion 0 13.30 6.34 0.86 13.32 6.94 24.94 4.55 11.01 12.89 15.83 31.02 43.38 111.56 77.77 39.69 75.60 102.74 8.18 4.76 13.47 15.90 3.09 0.40 10 E1_Da NovelBoundary 1 11.11 9.74 0.00 4.69 0.00 8.29 9.41 6.82 11.17 7.71 24.59 17.71 92.20 88.53 11.50 30.33 86.58 6.47 4.24 11.70 13.16 0.00 3.59 11 E1a_E2a KnownJunction 1 16.74 12.50 3.67 21.61 3.65 38.39 0.00 16.02 23.96 25.04 2.68 41.26 83.76 50.33 33.62 26.40 55.26 5.97 0.00 8.82 32.87 0.00 3.84 12 I1 Intron 0 2.85 7.30 0.27 6.24 4.29 7.14 3.50 4.67 4.99 6.39 12.31 21.32 56.46 22.36 8.15 24.03 38.83 1.95 2.34 4.52 2.45 2.46 1.14 13 I1_AR1 ActiveIntronRegion 1 3.28 4.84 0.00 2.11 1.14 10.90 4.66 2.48 4.43 1.31 9.73 45.24 64.64 27.24 1.37 13.53 65.49 4.52 3.41 4.52 7.62 0.41 0.00 14 I1_SR1 SilentIntronRegion 1 1.92 5.06 0.40 4.90 2.11 8.14 4.45 7.09 6.97 7.92 16.44 39.10 66.34 32.46 5.60 32.32 53.07 3.15 0.75 5.17 2.41 3.09 0.32 15 I1_AR2 ActiveIntronRegion 0 3.02 8.88 0.81 5.25 5.25 7.85 4.01 7.12 7.71 9.30 18.61 45.05 142.33 33.39 10.65 41.34 57.97 3.86 4.26 7.97 4.32 5.76 2.88 16 I1_SR2 SilentIntronRegion 0 2.91 7.38 0.19 6.57 4.45 6.89 3.32 4.18 4.48 5.99 11.20 16.30 45.09 19.97 8.23 21.35 34.67 1.55 2.25 4.04 2.14 2.05 1.03 17 Ix Intron 0 1.54 3.19 0.12 3.09 1.82 2.79 3.16 1.70 3.72 4.73 9.78 11.91 45.41 13.60 9.08 12.41 20.15 0.88 0.94 3.04 1.40 1.32 0.40 18 Ix_SR1 SilentIntronRegion 0 1.54 3.19 0.12 3.09 1.82 2.79 3.16 1.70 3.72 4.74 9.79 11.92 45.43 13.61 9.09 12.42 20.16 0.88 0.94 3.04 1.40 1.32 0.40 19 E2_Aa NovelBoundary 0 3.78 5.06 5.32 10.89 0.00 8.18 4.33 4.60 3.39 3.98 10.11 12.60 85.06 17.42 13.23 7.18 15.99 4.52 0.00 5.56 9.08 5.63 0.00 20 ER2a ExonRegion 0 12.48 14.55 3.13 25.34 10.77 23.47 4.81 19.53 20.63 25.65 25.17 34.28 90.33 58.34 52.13 51.49 79.70 12.09 4.20 8.44 15.09 0.29 2.10 21 E2_Da NovelBoundary 0 13.48 14.67 2.69 12.72 25.81 22.09 25.92 7.27 7.55 16.33 7.11 0.00 23.05 12.60 4.45 32.13 25.34 10.69 0.00 32.21 11.86 31.41 11.44 22 E2a_E3a KnownJunction 0 27.63 12.23 9.05 39.66 10.19 31.12 14.04 16.10 24.13 23.10 34.54 43.06 115.25 79.46 79.86 85.79 93.50 17.91 3.86 8.56 40.65 2.94 0.00 23 ER3a ExonRegion 0 12.53 13.16 0.87 20.54 8.36 28.17 7.88 10.18 27.72 24.41 30.17 21.10 87.12 62.05 30.69 50.12 64.36 10.43 3.03 7.55 9.01 3.30 2.89 24 IG32_SR1 SilentIntergenicRegion 0 8.19 9.05 0.82 20.41 13.80 40.67 8.54 16.77 22.31 18.69 18.82 17.75 60.64 41.04 23.10 40.44 60.02 6.45 6.98 5.35 10.23 3.09 0.95 25 IG32_AR1 ActiveIntergenicRegion 0 10.68 19.85 0.40 26.95 9.99 28.76 8.71 17.79 33.31 25.87 24.59 30.03 65.27 39.66 28.90 32.92 52.49 4.74 1.75 6.77 5.31 4.80 0.97