Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 LINGO2 Gene 0 1.75 104.46 6.51 26.81 35.60 40.74 38.18 61.07 92.54 48.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 131.35 40.21 116.75 4.49 0.34 0.43 2 308675 Transcript 0 0.76 32.96 2.79 5.26 16.86 11.41 14.69 24.72 22.98 15.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61.58 16.86 44.32 1.54 0.48 0.00 3 379992 Transcript 0 0.42 24.32 1.99 7.11 10.21 8.73 10.27 15.53 20.68 10.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.39 4.55 24.70 0.88 0.23 0.00 4 493941 Transcript 0 0.00 11.86 1.57 2.34 10.49 6.34 9.86 8.72 3.94 6.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.12 1.34 16.70 0.00 0.00 0.00 5 IG8_AR8 ActiveIntergenicRegion 0 0.00 5.57 0.00 5.38 7.32 5.50 20.56 12.65 7.22 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.89 0.00 10.30 0.00 0.00 0.00 6 IG8_AR7 ActiveIntergenicRegion 0 0.00 8.36 0.00 3.94 10.70 1.83 21.77 12.29 7.41 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.54 0.00 8.51 0.00 0.00 0.00 7 IG8_SR5 SilentIntergenicRegion 0 0.09 23.43 0.67 3.33 4.66 1.01 12.55 11.11 7.97 5.91 0.00 0.02 0.00 0.00 0.00 0.00 0.00 6.40 2.15 15.57 0.09 0.01 0.03 8 ER1a ExonRegion 0 0.12 71.03 6.44 15.29 12.17 21.39 37.56 43.13 50.90 27.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 93.70 29.71 72.17 4.69 0.00 0.00 9 E1a_E2a KnownJunction 0 0.00 122.28 2.60 43.22 32.09 40.37 57.15 54.42 90.74 52.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 124.53 56.85 122.91 8.22 0.00 0.00 10 I1 Intron 0 0.21 28.26 0.68 4.09 6.18 1.90 13.30 11.41 8.69 4.43 0.01 0.01 0.00 0.00 0.00 0.00 0.00 8.02 2.97 19.29 0.04 0.00 0.02 11 I1_AR1 ActiveIntronRegion 0 0.00 13.31 0.71 3.81 9.42 1.67 20.18 11.41 4.35 2.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.06 3.98 13.24 0.00 0.00 0.00 12 I1_SR2 SilentIntronRegion 0 0.34 33.51 1.03 5.82 8.70 1.81 14.30 15.68 11.04 5.69 0.02 0.00 0.00 0.00 0.00 0.00 0.00 11.36 4.14 20.87 0.05 0.00 0.06 13 I1_AR2 ActiveIntronRegion 0 0.00 23.88 0.00 3.87 5.34 0.40 15.58 13.00 13.03 8.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.40 2.85 21.59 0.00 0.00 0.00 14 I1_SR3 SilentIntronRegion 0 0.19 29.56 0.56 3.69 5.44 2.17 13.08 10.44 8.69 4.29 0.00 0.02 0.00 0.00 0.00 0.00 0.00 7.47 2.68 20.56 0.05 0.00 0.00 15 ER2a ExonRegion 0 1.13 132.66 9.26 32.69 19.66 47.98 48.83 58.53 90.98 60.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 139.46 46.22 148.07 9.25 1.21 0.00 16 E2a_E3a KnownJunction 0 0.00 155.76 3.31 20.58 28.69 20.27 34.98 41.40 62.59 39.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 153.34 54.21 100.67 8.77 0.00 0.00 17 E2a_E4a NovelJunction 0 0.00 16.44 0.00 0.00 3.14 5.22 2.21 2.55 14.67 3.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.32 0.00 2.36 0.00 0.00 0.00 18 I2_AR1 ActiveIntronRegion 0 1.78 41.07 1.54 3.08 2.25 1.23 9.14 15.17 3.10 0.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.48 2.14 2.86 0.00 0.00 0.00 19 ER3a ExonRegion 0 1.67 131.26 6.39 17.76 42.65 17.45 38.07 63.53 67.82 48.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 203.14 46.82 115.34 7.28 0.06 0.00 20 E3a_E4a KnownJunction 0 3.78 107.42 10.88 14.52 53.57 27.71 44.87 74.06 70.34 41.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 188.70 39.06 132.12 5.31 0.00 0.00 21 E3b_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 ER3b ExonRegion 0 0.00 10.17 0.00 1.70 0.00 0.46 0.00 1.73 1.24 1.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.77 0.00 8.51 0.00 0.00 0.00 23 I3_SR1 SilentIntronRegion 0 0.72 56.68 1.54 8.70 13.94 4.55 12.09 17.27 18.30 9.80 0.00 0.16 0.00 0.00 0.00 0.00 0.00 5.30 2.10 15.04 0.00 0.00 0.00 24 I3_AR1 ActiveIntronRegion 0 0.47 69.13 0.85 7.88 15.69 4.22 13.90 22.45 13.01 11.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.40 4.02 19.27 0.82 0.00 0.00 25 ER4a ExonRegion 0 3.06 122.92 11.81 22.90 48.98 48.19 43.80 66.35 81.59 53.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 213.83 44.42 136.58 11.45 0.00 0.00 26 E4_Ab KnownBoundary 0 3.63 155.43 15.05 29.00 66.30 77.23 63.82 68.02 98.84 58.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 209.88 42.64 157.81 14.58 0.00 0.00 27 ER4b ExonRegion 0 1.64 98.14 7.71 23.73 49.74 41.59 68.29 57.73 70.99 47.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 192.99 49.55 141.00 6.97 0.92 0.00 28 E4_Da NovelBoundary 0 0.00 80.38 5.97 7.66 49.58 31.46 42.75 40.38 33.51 41.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 102.97 64.94 117.16 3.15 2.39 0.00 29 E4a_E5a KnownJunction 0 0.00 56.04 2.66 9.92 27.16 23.79 24.42 46.29 41.43 34.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 105.42 43.30 84.56 2.41 2.39 0.00 30 E4b_E6a KnownJunction 0 0.00 8.88 1.74 0.00 14.69 8.57 4.15 6.86 5.03 5.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.81 0.00 17.90 0.00 0.00 0.00 31 E4_Dc NovelBoundary 0 0.00 8.88 2.96 3.70 3.40 0.00 7.82 2.14 13.66 6.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.15 21.55 13.49 0.00 0.00 0.00 32 E4c_E7b KnownJunction 0 0.00 3.35 0.00 1.83 0.00 2.50 7.91 1.81 3.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.15 0.00 0.00 0.00 0.00 0.00 33 E4c_E8a NovelJunction 0 0.00 64.20 1.54 5.69 7.98 24.30 14.79 23.62 31.48 20.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 137.46 30.02 93.51 3.09 0.00 0.00 34 ER4c ExonRegion 0 0.00 39.88 3.68 4.03 27.22 20.65 19.00 28.11 22.61 28.77 0.00 0.00 0.00 0.00 0.00 0.00 0.00 69.09 30.61 61.05 2.20 0.72 0.00 35 ER4d ExonRegion 0 0.00 10.17 1.23 1.36 10.70 5.50 5.30 4.03 6.59 4.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.09 2.12 6.38 2.20 0.00 0.00 36 I4 Intron 0 0.25 23.28 0.77 3.46 7.41 2.09 14.96 14.50 11.52 5.75 0.00 0.02 0.00 0.00 0.00 0.00 0.00 4.29 2.50 17.58 0.04 0.00 0.02 37 I4_SR1 SilentIntronRegion 0 0.28 53.87 2.28 8.09 11.61 5.95 23.33 22.71 17.91 10.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.28 4.48 23.17 0.02 0.00 0.00 38 I4_AR1 ActiveIntronRegion 0 0.00 24.79 0.59 5.66 7.54 4.87 14.09 20.89 15.11 9.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.32 1.88 26.21 0.00 0.00 0.00 39 I4_SR3 SilentIntronRegion 0 0.00 7.24 1.24 3.16 14.13 0.00 10.94 19.08 7.90 4.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.22 0.00 12.54 0.00 0.00 0.00 40 I4_SR4 SilentIntronRegion 0 1.94 46.25 0.00 6.19 9.48 1.83 14.11 23.70 15.46 8.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 8.10 19.03 0.00 0.00 0.00 41 I4_AR3 ActiveIntronRegion 0 0.87 30.06 0.00 3.94 7.33 0.64 14.36 12.93 8.22 5.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 4.43 15.03 0.00 0.00 0.00 42 I4_AR4 ActiveIntronRegion 0 0.81 13.49 1.75 4.39 12.93 2.41 17.05 10.83 5.67 3.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.36 4.85 11.16 0.00 0.00 0.00 43 I4_SR7 SilentIntronRegion 0 0.34 33.94 0.81 3.87 10.29 1.79 15.34 15.63 12.12 6.02 0.00 0.07 0.00 0.00 0.00 0.00 0.00 4.88 2.10 18.55 0.05 0.00 0.04 44 I4_AR7 ActiveIntronRegion 0 0.00 32.33 1.26 2.95 5.40 0.93 12.74 13.08 12.03 4.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.74 0.00 15.74 0.00 0.00 0.00 45 I4_SR8 SilentIntronRegion 0 1.08 28.16 0.86 5.50 16.49 4.80 23.42 23.93 18.76 10.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.29 4.09 26.28 0.08 0.05 0.00 46 I4_AR8 ActiveIntronRegion 0 0.52 43.65 0.60 4.14 17.91 4.16 32.21 23.27 12.97 6.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.92 3.32 15.37 0.00 0.00 0.55 47 I4_SR9 SilentIntronRegion 0 0.30 16.80 0.77 4.97 10.37 3.49 23.71 18.49 17.23 7.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.77 3.36 25.26 0.10 0.00 0.01 48 I4_AR9 ActiveIntronRegion 0 0.00 7.20 0.15 1.09 2.84 2.57 11.59 6.56 9.76 4.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.73 2.93 25.80 0.16 0.00 0.00 49 I4_AR10 ActiveIntronRegion 0 0.00 18.13 0.26 1.17 4.07 0.97 17.16 14.08 15.09 10.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.66 2.75 23.57 0.00 0.00 0.00 50 I4_SR11 SilentIntronRegion 0 0.21 26.37 0.58 6.09 6.58 1.65 16.78 32.15 26.72 11.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.66 4.08 23.32 0.00 0.00 0.00 51 I4_AR11 ActiveIntronRegion 0 0.00 37.21 1.63 6.89 12.29 5.57 17.80 36.68 24.86 11.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 1.24 7.68 0.00 0.00 0.00 52 I4_SR12 SilentIntronRegion 0 0.25 42.49 1.62 6.82 10.97 1.69 18.46 33.48 22.86 10.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.00 5.11 16.19 0.13 0.00 0.00 53 I4 Intron 0 0.28 25.19 0.36 2.05 6.69 2.18 13.18 6.53 4.72 1.74 0.01 0.08 0.03 0.01 0.00 0.00 0.07 2.76 1.98 7.32 0.06 0.00 0.04 54 I4_SR1 SilentIntronRegion 0 0.41 35.30 0.41 2.89 9.29 3.10 16.49 7.67 5.81 2.16 0.02 0.09 0.00 0.01 0.00 0.00 0.08 3.27 2.38 8.11 0.05 0.00 0.06 55 E5a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56 ER5a ExonRegion 0 0.00 0.00 0.00 0.06 0.00 1.28 1.09 2.10 1.07 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.14 1.94 3.52 0.00 0.00 0.00 57 I5 Intron 0 0.17 21.05 1.15 3.11 4.00 2.32 14.74 11.94 11.93 6.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.54 2.69 9.66 0.07 0.00 0.01 58 I5_SR2 SilentIntronRegion 0 0.11 15.14 0.72 2.66 3.55 2.34 16.79 9.29 8.50 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 2.36 9.29 0.08 0.00 0.00 59 I5_AR2 ActiveIntronRegion 0 1.56 148.33 7.72 15.15 22.40 8.87 21.50 48.73 42.40 32.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.93 4.95 12.37 0.00 0.00 0.00 60 I5_SR3 SilentIntronRegion 0 0.18 23.90 1.37 3.43 3.89 2.36 14.63 14.13 16.30 8.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.37 3.43 10.40 0.08 0.00 0.00 61 E6_Aa NovelBoundary 0 0.00 13.09 0.00 0.00 8.15 2.67 40.59 14.50 4.37 1.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.58 0.00 12.08 0.00 0.00 0.00 62 ER6a ExonRegion 0 0.00 14.84 1.40 4.67 6.29 4.12 15.57 10.58 2.85 6.15 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.44 2.68 15.50 0.00 0.00 0.00 63 I6_AR5 ActiveIntronRegion 0 4.02 97.19 0.00 6.73 16.88 0.77 9.81 9.52 6.39 1.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.87 2.60 10.03 0.00 0.00 0.00 64 I6_AR6 ActiveIntronRegion 0 0.44 27.36 0.00 1.51 15.67 2.15 7.92 4.40 2.32 0.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.21 4.36 4.54 0.00 0.00 0.00 65 I6_AR9 ActiveIntronRegion 0 0.00 24.34 0.48 1.57 1.19 0.27 6.58 12.39 8.98 1.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.28 3.57 15.83 0.00 0.00 0.00 66 I6_SR9 SilentIntronRegion 0 0.00 22.75 0.48 2.20 1.36 1.27 4.73 7.12 11.49 3.89 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.14 2.02 13.58 0.80 0.00 0.00 67 I6_SR10 SilentIntronRegion 0 0.43 24.32 0.93 2.08 1.91 0.94 5.68 10.00 12.79 4.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.97 0.65 12.61 0.00 0.00 0.60 68 I6_AR12 ActiveIntronRegion 0 0.49 21.90 0.00 2.95 5.10 4.39 8.23 10.75 23.56 4.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.59 1.02 9.77 0.00 0.00 0.00 69 I6_SR12 SilentIntronRegion 0 0.00 10.64 0.06 0.99 3.16 2.68 5.29 10.20 24.46 5.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.94 12.11 0.00 0.00 0.00 70 I6_AR13 ActiveIntronRegion 0 0.00 26.32 1.57 4.92 7.59 8.69 7.71 12.93 31.08 13.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.65 1.61 22.20 0.00 0.00 0.00 71 I6_SR13 SilentIntronRegion 0 0.39 20.88 2.83 4.24 9.32 8.27 10.72 15.99 27.00 9.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.49 2.44 19.48 0.00 0.00 0.00 72 I6_AR14 ActiveIntronRegion 0 0.53 18.61 5.19 4.20 9.10 9.38 14.59 15.58 34.89 10.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.09 5.53 21.65 0.00 0.00 0.00 73 I6_SR14 SilentIntronRegion 0 0.14 27.53 0.83 3.50 6.24 7.68 10.58 15.84 24.62 8.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.60 1.09 16.28 0.00 0.00 0.00 74 I6_SR15 SilentIntronRegion 0 0.24 24.99 1.06 3.99 7.30 5.51 8.53 13.09 22.03 9.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.16 1.77 16.74 0.25 0.00 0.00 75 ER7a ExonRegion 0 0.00 1.36 0.41 1.82 3.57 4.28 3.09 1.15 2.06 0.76 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.62 0.00 1.42 0.00 0.00 0.00 76 ER7b ExonRegion 0 0.21 22.04 2.16 5.21 5.67 30.40 11.47 6.88 23.12 5.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.52 1.47 11.83 0.26 0.00 0.00 77 E7a_E8a KnownJunction 0 0.00 40.19 6.21 10.72 8.49 19.76 8.26 13.60 54.22 14.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.14 0.00 15.15 0.00 0.00 0.00 78 ER8a ExonRegion 0 2.13 125.34 6.91 31.55 41.59 50.00 41.66 71.26 115.11 58.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 174.35 52.05 139.91 5.48 0.20 0.69 79 E8_Da KnownBoundary 0 0.00 67.82 2.96 6.19 50.59 27.94 38.20 22.43 34.40 17.49 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.86 13.65 74.14 0.00 0.00 0.00 80 ER8b ExonRegion 0 2.12 97.89 8.71 30.63 40.33 35.20 38.16 70.10 92.37 45.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33.96 20.64 108.62 2.20 1.16 0.00 81 IG7_SR10 SilentIntergenicRegion 0 0.13 42.89 1.07 4.69 9.05 13.64 16.44 13.51 36.85 11.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.79 7.11 60.02 0.40 0.38 0.00 82 IG7_AR9 ActiveIntergenicRegion 0 0.00 111.10 1.64 7.62 13.33 15.68 24.74 28.33 61.06 20.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49.87 13.77 82.19 3.29 0.51 0.00 83 IG7_SR9 SilentIntergenicRegion 0 0.00 54.46 1.02 3.93 14.79 14.63 21.06 19.68 46.73 17.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.74 5.28 52.01 0.44 0.13 0.00 84 IG7_AR8 ActiveIntergenicRegion 0 0.28 64.34 2.14 8.75 31.16 25.40 24.97 34.75 74.43 21.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42.93 15.41 91.16 2.01 0.00 0.00 85 IG7_SR8 SilentIntergenicRegion 0 1.22 126.16 4.47 14.83 44.76 43.42 31.09 60.14 85.84 38.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 36.96 18.39 72.84 0.60 0.07 0.00 86 IG7_AR7 ActiveIntergenicRegion 0 1.97 125.32 4.42 12.03 46.59 24.50 23.65 74.02 76.98 31.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.18 14.43 43.98 0.91 0.00 0.00