Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C9orf150 Gene 0 20.25 59.99 143.49 68.21 24.58 84.35 25.94 12.57 15.50 15.45 22.19 0.00 3.37 0.00 0.00 0.14 4.58 77.86 35.36 59.39 42.68 95.69 46.29 2 319264 Transcript 0 22.22 66.85 134.02 68.99 30.14 96.13 33.33 13.97 18.27 17.81 28.51 0.00 2.31 0.00 0.00 0.08 3.79 86.42 36.49 59.66 54.77 101.81 52.32 3 489107 Transcript 0 4.13 6.84 64.86 18.17 2.70 5.62 4.28 4.58 3.24 3.64 4.16 0.00 2.51 0.00 0.00 0.00 3.53 7.37 7.04 15.03 3.05 24.79 4.74 4 ER1a ExonRegion 0 20.20 45.59 161.93 64.69 40.96 138.66 41.93 13.00 12.55 16.13 32.11 0.00 3.27 0.00 0.00 0.23 8.68 122.68 53.33 90.49 72.24 128.71 75.32 5 E1_Ab KnownBoundary 0 16.52 60.32 109.10 52.24 21.48 26.23 19.43 11.42 4.14 13.11 19.11 0.00 6.82 0.00 0.00 0.00 8.32 87.76 51.30 55.86 84.70 88.36 38.24 6 ER1b ExonRegion 0 14.10 29.36 65.62 24.34 6.58 37.80 8.64 2.95 5.23 5.91 13.36 0.00 1.23 0.00 0.00 0.42 3.40 77.00 23.73 35.51 42.66 34.18 21.55 7 E1_Da NovelBoundary 0 2.74 3.35 69.78 9.09 0.00 8.18 0.00 0.00 3.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54.30 4.80 34.90 19.65 17.88 11.95 8 E1a_E2a KnownJunction 0 0.00 0.00 0.00 1.40 0.00 2.16 0.00 2.34 1.24 1.10 0.00 0.00 0.00 0.00 0.00 0.00 4.68 2.03 4.52 0.00 3.03 5.51 0.00 9 E1a_E3a KnownJunction 0 17.11 44.20 68.18 33.00 20.71 51.90 28.84 9.16 14.06 13.14 28.53 0.00 0.00 0.00 0.00 0.00 0.00 64.13 17.69 29.72 54.92 53.89 29.96 10 Ix Intron 0 5.45 15.22 134.82 33.20 4.85 11.28 8.02 2.82 3.77 2.85 10.87 0.00 2.25 0.00 0.00 0.00 1.57 53.72 17.92 42.80 15.44 26.72 20.30 11 Ix_SR1 SilentIntronRegion 0 0.02 3.94 56.65 10.96 0.00 1.48 2.05 0.58 3.07 1.38 5.68 0.00 1.56 0.00 0.00 0.00 0.00 38.25 11.76 32.20 14.99 9.81 16.01 12 Ix_AR1 ActiveIntronRegion 0 6.19 16.76 145.55 36.25 5.50 12.61 8.83 3.13 3.87 3.05 11.59 0.00 2.35 0.00 0.00 0.00 1.79 55.91 18.78 44.30 15.53 29.04 20.91 13 E2_Aa NovelBoundary 0 10.96 13.16 198.07 65.03 8.66 5.34 0.00 8.38 4.66 2.63 10.27 0.00 0.00 0.00 0.00 0.00 0.00 14.18 0.00 38.73 0.00 52.05 7.60 14 ER2a ExonRegion 0 8.26 13.68 129.71 34.95 5.40 9.08 8.55 6.81 5.24 6.19 8.31 0.00 5.01 0.00 0.00 0.00 2.39 12.70 9.56 30.06 3.07 44.08 9.48 15 E2_Da NovelBoundary 0 0.00 25.26 21.73 17.85 4.33 0.00 21.99 0.00 6.16 1.34 0.00 0.00 13.64 0.00 0.00 0.00 4.02 6.72 8.28 35.92 0.00 6.25 14.77 16 Ix Intron 0 7.88 21.46 45.96 38.09 7.68 8.70 11.09 4.59 6.54 6.31 0.99 0.00 3.46 0.00 0.04 0.12 1.19 12.91 16.44 23.48 1.57 10.38 9.08 17 Ix_SR1 SilentIntronRegion 0 6.22 16.59 26.42 24.42 5.20 5.13 10.43 4.41 3.86 5.13 1.16 0.00 3.94 0.00 0.00 0.00 1.26 12.63 16.66 28.57 2.36 6.70 9.16 18 Ix_AR1 ActiveIntronRegion 0 5.71 12.60 29.59 45.70 6.24 9.03 15.61 2.53 4.30 4.14 1.98 0.00 2.97 0.00 0.00 0.98 2.68 22.75 25.72 32.99 1.74 4.34 14.61 19 Ix_SR2 SilentIntronRegion 0 5.33 18.00 33.39 35.89 6.06 5.93 9.34 3.29 6.54 6.60 0.35 0.00 4.05 0.00 0.15 0.00 1.08 8.47 12.18 19.33 1.35 10.04 8.11 20 Ix_AR2 ActiveIntronRegion 0 15.17 33.98 65.65 48.91 16.32 11.74 13.19 5.35 3.70 7.10 0.64 0.00 3.90 0.00 0.00 0.00 1.06 9.75 19.07 21.24 0.36 12.09 9.75 21 Ix_SR3 SilentIntronRegion 0 13.91 32.54 76.53 54.04 9.74 11.21 8.87 3.56 7.85 7.15 0.47 0.00 1.43 0.00 0.00 0.06 0.88 16.95 19.46 20.23 1.45 16.01 8.49 22 Ix_AR3 ActiveIntronRegion 0 10.87 39.41 96.88 66.08 10.66 16.97 15.97 9.36 12.27 7.93 1.21 0.00 4.92 0.00 0.00 0.65 0.70 20.59 20.16 32.12 2.16 16.15 9.78 23 Ix_SR4 SilentIntronRegion 0 6.73 15.63 50.33 29.79 9.01 12.65 12.13 6.32 9.48 6.92 2.03 0.00 2.33 0.00 0.00 0.00 1.24 11.34 14.47 16.63 0.66 11.66 8.25 24 Ix Intron 0 2.28 10.34 10.60 9.86 3.12 2.94 5.47 1.54 2.79 2.12 1.05 0.00 2.73 0.00 0.01 0.00 0.60 7.01 7.54 18.33 1.56 5.61 5.10 25 Ix_SR1 SilentIntronRegion 0 4.90 29.49 18.28 21.57 4.74 4.37 7.93 3.33 10.15 6.52 2.37 0.00 5.64 0.00 0.00 0.00 0.90 15.53 18.44 29.26 3.90 10.78 14.20 26 Ix_AR1 ActiveIntronRegion 0 1.18 16.36 8.33 9.09 3.72 1.65 6.81 1.69 3.36 2.31 1.74 0.00 0.00 0.00 0.00 0.00 0.88 14.93 13.52 28.61 1.25 5.79 5.97 27 Ix_SR2 SilentIntronRegion 0 4.04 26.17 27.96 11.00 2.63 8.59 14.78 2.27 7.18 2.46 2.58 0.00 0.78 0.00 0.00 0.00 1.65 13.86 9.79 38.18 1.35 0.89 6.85 28 Ix_AR2 ActiveIntronRegion 0 2.19 10.54 13.73 12.70 3.28 3.57 8.10 1.38 5.28 1.29 1.46 0.00 6.51 0.00 0.00 0.00 2.64 10.53 12.91 28.84 0.15 5.17 6.86 29 Ix_SR3 SilentIntronRegion 0 1.00 8.76 8.27 9.36 3.35 2.78 7.21 1.71 3.56 1.85 1.74 0.00 3.07 0.00 0.00 0.00 0.32 9.15 7.74 21.80 2.12 7.52 6.97 30 Ix_AR3 ActiveIntronRegion 0 1.54 5.90 10.67 7.86 3.15 2.76 7.17 1.65 3.41 3.31 2.25 0.00 4.21 0.00 0.00 0.00 0.48 12.44 6.97 29.57 1.34 8.59 7.41 31 Ix_SR4 SilentIntronRegion 0 1.50 2.52 12.79 4.90 1.56 2.75 7.06 0.72 0.91 1.05 1.93 0.00 2.00 0.00 0.34 0.00 2.75 4.25 4.24 18.82 1.65 5.29 3.30 32 Ix_AR6 ActiveIntronRegion 0 5.03 17.13 12.10 21.67 3.28 5.36 6.26 0.00 2.72 2.47 0.58 0.00 3.05 0.00 0.00 0.00 0.00 44.39 34.72 26.28 7.22 5.83 11.75 33 Ix_AR7 ActiveIntronRegion 0 0.00 9.77 11.10 24.27 4.46 4.18 7.21 0.00 4.12 2.29 1.93 0.00 0.00 0.00 0.00 0.00 0.00 25.05 9.03 26.60 8.02 6.83 7.67 34 Ix_AR8 ActiveIntronRegion 0 2.77 10.69 15.08 13.23 2.92 1.99 6.33 2.52 2.24 1.75 1.32 0.00 1.59 0.00 0.00 0.00 0.00 16.10 9.78 26.08 2.49 3.39 6.72 35 Ix_SR7 SilentIntronRegion 0 3.64 17.22 18.69 15.87 2.06 2.52 6.42 2.29 2.08 2.56 0.32 0.00 2.47 0.00 0.00 0.00 0.28 2.60 9.36 18.32 0.78 4.33 4.11 36 Ix_AR9 ActiveIntronRegion 0 3.23 13.55 16.49 23.51 3.96 2.41 4.88 2.63 6.02 3.80 0.00 0.00 3.18 0.00 0.00 0.00 0.00 5.33 7.93 22.11 1.09 5.82 5.10 37 Ix_AR10 ActiveIntronRegion 0 4.90 18.85 28.07 33.34 6.72 4.16 8.01 3.30 9.05 6.89 0.80 0.00 4.98 0.00 0.00 0.00 0.00 9.28 11.25 24.42 0.46 9.44 5.20 38 Ix_AR11 ActiveIntronRegion 0 2.12 20.06 30.39 29.44 4.10 0.98 10.50 1.73 6.34 3.67 0.00 0.00 1.56 0.00 0.00 0.00 0.00 10.96 13.80 25.67 0.00 5.28 2.94 39 Ix_AR12 ActiveIntronRegion 0 3.46 20.15 32.86 34.32 4.14 1.83 12.16 1.73 9.88 6.05 0.00 0.00 11.51 0.00 0.00 0.00 0.00 11.42 6.95 33.27 0.00 4.17 2.67 40 Ix_AR13 ActiveIntronRegion 0 6.35 16.61 31.04 34.30 5.35 1.83 14.34 1.73 11.73 5.54 0.00 0.00 14.07 0.00 0.00 0.00 0.00 11.09 3.19 32.98 0.00 3.13 2.94 41 Ix_AR14 ActiveIntronRegion 0 9.43 26.99 37.43 31.72 3.41 1.83 13.48 1.26 12.35 4.59 0.00 0.00 14.07 0.00 0.00 0.00 0.00 11.93 7.82 36.17 0.00 0.76 2.94 42 Ix_AR15 ActiveIntronRegion 0 13.12 28.47 34.43 31.62 13.38 10.45 9.14 1.04 11.73 4.59 0.00 0.00 7.50 0.00 0.00 0.00 1.98 11.09 6.37 32.34 0.00 2.08 5.87 43 Ix_AR16 ActiveIntronRegion 0 16.51 26.44 29.53 35.84 12.58 12.84 9.27 1.73 11.49 5.73 0.00 0.00 0.00 0.00 0.00 0.00 3.30 12.01 6.37 23.83 0.00 5.00 5.87 44 Ix_AR17 ActiveIntronRegion 0 14.55 24.40 29.87 35.09 10.70 12.84 11.25 1.73 10.04 4.59 0.00 0.00 0.00 0.00 0.00 0.00 3.30 13.17 7.17 14.10 0.55 10.42 2.94 45 Ix_SR8 SilentIntronRegion 0 7.08 23.41 29.73 19.21 7.15 4.23 5.05 3.72 3.01 3.69 0.37 0.00 1.50 0.00 0.00 0.00 1.14 6.50 9.77 13.60 2.10 4.40 4.18 46 E3_Aa NovelBoundary 0 13.78 2.96 41.42 11.59 3.82 18.28 13.87 0.00 0.00 0.00 0.00 0.00 6.01 0.00 0.00 0.00 0.00 9.12 0.00 12.14 3.09 5.57 16.39 47 ER3a ExonRegion 0 29.35 110.75 171.94 109.28 28.76 97.82 29.21 19.75 28.21 24.17 24.88 0.00 3.66 0.00 0.00 0.00 2.71 72.44 38.45 58.78 37.15 122.84 51.69 48 IG40_AR1 ActiveIntergenicRegion 0 17.21 72.31 59.79 87.16 17.21 50.65 20.66 8.76 14.26 7.70 1.81 0.00 5.73 0.00 0.00 0.00 1.09 8.29 14.71 28.42 3.03 49.90 5.81 49 IG40_SR1 SilentIntergenicRegion 0 1.99 10.27 8.58 7.65 2.78 10.03 3.18 0.50 2.03 1.19 0.40 0.00 0.00 0.00 0.00 0.00 0.27 5.86 4.38 9.93 1.56 7.60 2.63 50 IG40_AR4 ActiveIntergenicRegion 0 1.43 6.20 13.16 18.69 1.21 2.07 1.73 0.87 1.41 0.96 0.22 0.80 0.00 0.00 0.00 0.00 0.00 2.53 2.04 1.98 0.25 0.47 0.21